Array 1 433540-434665 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIFC01000003.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 1772 1772_3_length_614474_cov_73.726, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 433540 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 433601 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 433662 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 433723 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 433784 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 433845 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 433906 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 433967 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 434028 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 434089 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 434150 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 434211 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 434272 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 434333 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 434394 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 434455 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 434516 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 434577 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 434638 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 450924-452532 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIFC01000003.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 1772 1772_3_length_614474_cov_73.726, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 450924 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 450985 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 451046 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 451107 29 100.0 44 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGA 451180 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 451241 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 451302 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 451363 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 451424 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 451485 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 451546 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 451607 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 451668 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 451729 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 451790 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 451851 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 451912 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 451973 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 452076 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 452137 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 452198 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 452259 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 452320 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 452381 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 452442 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 452503 29 96.6 0 A............................ | A [452529] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //