Array 1 43799-42911 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAADDG010000013.1 Clostridioides difficile strain MON005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 43798 29 100.0 37 ............................. GATATAGATGCAGAGGATGCTTTAGAACGTGTTCAAT 43732 29 100.0 37 ............................. TTTTCAGAACATACTTCATCAAGAACTTTCTCTACTT 43666 29 100.0 37 ............................. GACAATACAGAAGAAGCAACAGAAAGCAATCCCATAA 43600 29 100.0 37 ............................. ACATATGTTTTGATACAGATTTCTCTACAACATTCAG 43534 29 100.0 36 ............................. TGCACAGTAGTAGCAGTAAGATTGCTTGTTGCATTA 43469 29 100.0 39 ............................. ATTTAACAAAAGGTGTGGGGGGTGGGGGTCTTGCAACCA 43401 29 100.0 37 ............................. CATCATTGCCCTTTATAGCTTCCATTAATTCAGTTCT 43335 29 100.0 37 ............................. TTGGACAAGATTGTTTTCATAGATACAGGACTAGAAT 43269 29 100.0 38 ............................. ATAGTAGAGGTTTTAGGAGCACCTGCTGAACTTCTTAG 43202 29 100.0 37 ............................. TGACCTCCTAAGGATTTTGTTGCAACTCTTTTAACCT 43136 29 100.0 36 ............................. TTGTAATAAGTATGGCTTCATCTTCATAACTTTCAT 43071 29 100.0 38 ............................. TAAGATGTCTGAGGAAATGCAATCTTTAAATTATTTTG 43004 29 100.0 36 ............................. ACGTTTCGCAAGGGATTTTTTAAAGCGAATGGATAA 42939 29 82.8 0 ................A.CA...T....T | ========== ====== ====== ====== ============================= ======================================= ================== 14 29 98.8 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAAGTCGTTAAATAGAATTAGAAAGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGAGAGGATTCAATCTATATTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGTATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGCGTATGATAACTGTTATCAATTGCACTACTGTTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTATTTTCAATGTATTCAATTACACCTATTTTGGG # Right flank : AAAATACACTTACCTATAAACATGATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAGGAAATTAAACAATAAAGATATAAATAAAATCATGGAAATATGGGAAGAAAGCACAATCAAAGCACATGGCTTTATAAGTAAAGAATACTGGCAAAATAACCATAATGCTGTTAAAAATGAGTATATACCTATATCAGATACATTTGTATATGATATTGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAAAGCCTAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAATTGAAAAATATAAAAGTCTAAGTTTAGCAGTATACAAAGATAATAAAAAAGCAGTTATTTTTTATAATAAAAAAGGTTTTAATGTAGTAAAAGAGCAATTAAATGAAGACTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGAGTACAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 229282-228329 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAADDG010000002.1 Clostridioides difficile strain MON005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 229281 29 100.0 36 ............................. CTAAAAATATGCTCCAATCCAAAGCCATTAGCATCC 229216 29 100.0 37 ............................. TTGACAGAAGCATTTGAAACTGCTGATCATAATTACA 229150 29 100.0 38 ............................. ATAGGCAAAATGTAGACTTAGCAGTACAAATCCATTTC 229083 29 100.0 36 ............................. TGTATAGAATTAAGAATTTTTTAAATACTAATTATA 229018 29 100.0 37 ............................. ACGAACATACAACATATAAAATATAGATGTTATCATT 228952 29 100.0 36 ............................. TAACGAAACTCGTGACGAGGGGAATAACAATAACAA 228887 29 100.0 38 ............................. TTCCAAGTGAGTATGTATGAAGAAATAACTTTTTTAAC 228820 29 100.0 36 ............................. TCTGCTCCCGACATTTTGTCTTTAAATAAAAAGCCA 228755 29 100.0 36 ............................. AGTTACAAAGCTATATATGATGACCCAGATATACCA 228690 29 100.0 37 ............................. ACATATGCTTTTAATTCAACTGTTGAAGATGAAATTA 228624 29 100.0 39 ............................. GTATCATAATCTATACATTCATCATAGTTCTTTTTTAGC 228556 29 100.0 37 ............................. CTTGTACATGTGTCTCATATTAAATTTAGAGTTTATA 228490 29 100.0 37 ............................. GTTGTATTACCTCTGTAATTATTTTTTCCAAAATTAC 228424 29 93.1 37 .C..............T............ TGTCCTAACCTAACAATATATTGGTTACCTCCACCTA 228358 29 86.2 0 ...............A......AT.T... | G [228337] ========== ====== ====== ====== ============================= ======================================= ================== 15 29 98.6 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : CTACAATTTATAGAGTGGAGTTCATACAAAAGATAATCCTCCCAACGTATAGAAGGGAGGTGAATATGTATGGATAATTTTTTACAAGGTATATTAGCAAGTTTAGTTGCTAGTTTAATAGTTTACTTAACTAGTAAGTTATTTAAAAAAGTAAAAAGCCACTCTGGCAGGAGTGACTTTAGTTTTGAACTAGAAATCAAGTTCAAAAAGAATAAACATTAGTATTTTAACTTCACTCTACGTCTAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAATTGGTGCAGATATTCAAAAATAATATTTTTATGATATAATAAAGATATAGAAATTTTGCAGTGTTCGATTTTTTGAATAAAATAGGGCTTAAGCATTGAAATATAAGGCGTTGAAGATGTATGATAAGTGTTATCATTTGCACCACTGCTCGCTCACTGCAAATTTTAGAGTGTTGCATATGTGTAAGTGTTGGAAATGCTAAGTTTATTTTGGG # Right flank : AAGTTACAATGAGTACAAGAATGTTTCTATTTATTGTAACTTTTTTTATTACAAACTTAAATTTATAGTATATTATAAAAATCATTATAAAAAGATGATTTAATAAAAAAATATAATTAAAAAAATGATTAATAATCTATAAAAATGGAAAAAGCATCCAATATCCTACAAAAATATATTTTTTTATTACAATTACAAGTTTTTATTGCATCTATTTAGCAAAAGTATTATTATGCAAGTAAGATAATTATCAAAGACAATTCTAAATAGTCTGATTTAAAAGTACAATTAAAGGATATAAATAGGAATAATTTATAAATATTACAGAAGATTTATAACTAAAATTACGAATGTAAGTTTGTTATATGGGGTAGTTGTGTGGATGAATCAAATAAATTAATATTAGAATTGAATAATATTTTCTGTGAATTAGAGAGTATTAATAAATATAAGTTTAATGAATATAAAGAAATTGTTAAAAACTTACACAACAAAAAAGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 21724-21432 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAADDG010000021.1 Clostridioides difficile strain MON005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 21723 29 100.0 36 ............................. GTCTATAAACATTTATAGAATGACTCCAAACACCTC 21658 29 100.0 37 ............................. GCGTCATTTTCAATACTTAAAAAGTCGAGAGAAAGTA 21592 29 100.0 36 ............................. GGCGATAAAATAAATGTTCGAGCTTCTTATACAGAC 21527 29 100.0 36 ............................. GGCGATAAAATAAATGTTCGAGCTTCTTATACAGAC 21462 29 93.1 0 .......................T....A | AG [21438] ========== ====== ====== ====== ============================= ===================================== ================== 5 29 98.6 36 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : GTTCCTCTTTTTCAATTATTTATTAAAATATTATTTTTTACTTATTTTAGAATTGTGTTCTTCAGAAAAAAGTTTAACTATTTTTAAAGCTTTATCTTTAGAATCTTCATCAAGTTTATTGAAGTGCTCTAATAATTCTCTCATTTCGTCAGTAGGATTTAATTTTTCTATCAATTCTTCTTCTCTTAAATTAGAAATATTGATTTTTATGTTAGTTCTTCCTAATAAATAATCAGTTGATATATCCAGCATATCAGCTATGTGCTTAACAATATCCAATGAAGGGCTTCTTTTTCCTGTTTCATAACCATTATAAGTTGTAACTGGCATGTTTAGTCTACTAGCCATTTCTTTTTGCATTAAACCGAGTTCTTCCCTAGCATCTCTTAATCTTTTAGCAAAAACATTTTCTTCATAATACATTTTATATTCCCCCGTTATAATCAATCTTAATCGTTATTTTACTACAAAATACGCGTTTTGTGTATTAATTACGCAAN # Right flank : AGTTACAATGAGTAGAAGAAAGTTTCTATTTATTGTAACTTTTTTTATTACAAACTTAAATTTATAGTATATTATAAAAATCATTATAAAAAGATGATTTAATAAAAAAATATAATTAAAAAGACGATTAACAATCTACAAAAATGGAAAAAATATCCATTATTCTACAAAAATAGATTTTTTTATTAGAATTACGAGTTTTTTATTGCATCTATTTACCAAAAGTATTATTATGTAAGTAAGATAATTATCAAAGACAATTCTGAATAGTCGGAAAACATTTCTAGAAATGAAAAGGTATAATTACATATTTTATTTAAAATTCTTTGGGAATTTTTAACTAAAAATAAGAACGTAAGTTCTGATAATAGGGGGGATAATAGTATGGAAGAAGAAATTTGTTATAAACTATTAATTTTTTATGAAGAGCTAGAAAATTTAAAAAAGAAGGATGAAGTGATATATAGCGAATGTAGAGAAGAGCTAGAAATATTACTTAA # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 23169-22742 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAADDG010000021.1 Clostridioides difficile strain MON005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 23168 29 100.0 37 ............................. AAGTTAACAAGAGATAATGTTGGAGAAGTAGCAAATA 23102 29 100.0 39 ............................. ATTTTAGATGAGGCAATAAGTGTTAGACCGTATAAATGC 23034 29 100.0 37 ............................. AAACAATGGCAAGATATAATAGTAAAAGAATATAATT 22968 29 100.0 36 ............................. GTCTATAAACATTTATAGAATGACTCCAAACACCTC 22903 29 100.0 37 ............................. GCGTCATTTTCAATACTTAAAAAGTCGAGAGAAAGTA 22837 29 100.0 36 ............................. GGCGATAAAATAAATGTTCGAGCTTCTTATACAGAC 22772 29 93.1 0 .......................T....A | AG [22749] ========== ====== ====== ====== ============================= ======================================= ================== 7 29 99.0 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : AGTGGAGTTCATACAAAAGATTATCCTCCCAACGTATAGAAGGGAGGTGTGTATGTATGGATAATTTTTTACAAAATGTACTAGAAAGACTATTTGTTAGTTTAATAGTTTGTCTAGTTAGCAATTTACTTAAAAAACGTAAAAAACCACTCAAAGCTGGCACTAAGAGTGGTTGGGAATTTGATTTAAAAATCAGATTCCATAAAACTAAGTAATTTTCAAATTACGAACTCCACTCTACTTCCAAATAGATTGTAGTTCTTCTTGCCTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAGATATAGAAATTTTGCAGTGTTCGATTTTTTTAATAAAATAAGGCTTAAGCATTGAAATATAAGGCGTTGAAGATGTGTGATAAGTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTAAGAGAGTTGCATATGTGTGAGTATTGGAAATGCTCAGTTTATTTTGGG # Right flank : AGTTACAATGAGTAGAAGAAAGTTTCTATTTATTGTAACTTTTTTTATTACAAACTTAAATTTATAGTATATTATAAAAATCATTATAAAAAGATGATTTAATAAAAAAATATAATTAAAAAGACGATTAACAATCTACAAAAATGGAAAAAATATCCATTATTCTACAAAAATAGATTTTTTTATTAGAATTACGAGTTTTTTATTGCATCTATTTACCAAAAGTATTATTATGTAAGTAAGATAATTATCAAAGACAATTCTGAATAGTCGGAAAACATTTCTAGAAATGAAAAGGTATAATTACATATTTTATTTAAAATTCTTTGGGAATTTTTAACTAAAAATAAGAACGTAAGTTCTGATAATAGGGGGGATAATAGTATGGAAGAAGAAATTTGTTATAAACTATTAATTTTTTATGAAGAGCTAGAAAATTTAAAAAAGAAGGATGAAGTGATATATAGCGAATGTAGAGAAGAGCTAGAAATATTACTTAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 668-1491 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAADDG010000041.1 Clostridioides difficile strain MON005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 668 29 96.6 37 .C........................... ATAATCTAAGAGTGGAGTTCATACAAAGAAAAAACCT 734 29 100.0 38 ............................. TCATTTGCTAGGAAGTTTATCATATTAAAATTGTGTAG 801 29 100.0 37 ............................. AAGAGCAAATCCATCCTGTTTAACTGCAATAAGATAT 867 29 100.0 37 ............................. ACGAAGATTTTGGATATTATTTAGGATACTTAGGTGC 933 29 100.0 38 ............................. TAGAAAAAGCAGAACCTCCTGCTTCTGCTTTTATACCA 1000 29 100.0 38 ............................. AATCATCCAATTCAAGAAAGAGCTTTAAAAGAATTACA 1067 29 100.0 37 ............................. AGAATAAGCGCACGTTCTTCTAATGTTAAGTCAGCGA 1133 29 100.0 38 ............................. AATCATCCAATTCAAGAAAGAGCTTTAAAAGAATTACA 1200 29 100.0 38 ............................. AATATTAATCTAAAAAATAGTAAAGATGATATTGTACC 1267 29 100.0 36 ............................. CTTGAATTAGTTTCTTATAGGCTATACCACCTGCAT 1332 29 100.0 36 ............................. GACCACCAAGTGCGCTTAGCGCGCCTTTCCATAAGT 1397 29 100.0 37 ............................. TTCGCAACTTATGATGGTGAAATGATTACATTAACAG 1463 29 86.2 0 ......T........AG...T........ | ========== ====== ====== ====== ============================= ====================================== ================== 13 29 98.7 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : CAAAGAGTGACTTACTAGTGGAATTTAAATTTAGATTTAAATCCAAAAAATAAACTATGTTTATGATGAACTTCGCTCTACGATGAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAATAAAAAAATTTTAACATTAATTATTGTCAGTTTTGACAATAATTAATGTTAATTTTTATAAATAATTAATAATGAGTCTGAATTAATGAATAAATTTAATTGTAAAAGTTATAAATAAGGAAGCACTTACAAATATGTAGGTGCTTCTGAATTTACAAATTATTCCATTTTGATTTTATAGTTTAGATTTTATGATATAATAAAAATATAGAAGTTTTGCAGTGTTCGATTTTTTGAACAAAATAGGGCCTAAGCATTGAAATGTAAGGTATTGAAGATGTATGATAAGTGTTATCAATTGCACTACTGCCCGCTCACTGCAAATTTAAGAAAGTTATATATGTGTAAGTGTTGGAAATGCTAAGTTTATTTTGGG # Right flank : TAAAGCAAAAGATAGGAATGATAATTTTAAAACTCCAAACTTTTATATTAACAATGTGGAGAAAAACTAAATAGAAGAAAGAAGCACTTATTTTTGGTAGGTGCTTTTATTTTGCTCAAAATATTTTAAATCAATAGACTAAGTTCTTATTTTTAGATAGAATTATATTTGAATAAAGAATTTAATAGGGGAGAGTTCATTATGTGGGGAAAATTTAAAAAATTAAGTTTGTTGAAGAAAATTTTAGTGATATTTTTAATATACTTTGTTGTATTTACAGTATCAATGATGATTCATCAAGCGATACGAGATTCAAAAAATAGAGATGAAGTAAATGAAGGAAATATTACAAAAGAAAATATAATTAGCGAAAGAGAAAAAGAAGATATTTATAAACAAGAGATGCAAGCAAAAGTAGACTCTATGATACCAGAAGACTTAAAAGATAAAACAACATATTATGTTAACATATTAAACCCAACAAAAGGTGAGGGATATAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 4052-4482 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAADDG010000041.1 Clostridioides difficile strain MON005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4052 30 100.0 37 .............................. TCAGATTTGCAACATAAGCTCTACTCCATCTATCTGT 4119 30 100.0 36 .............................. GAGTTAACTAAATTTTCGCAAGAAGTAGCAAACTAT 4185 30 100.0 37 .............................. CTTCCTATGTTCTAAGCATAACATAATCTGTTCCTTT 4252 30 100.0 37 .............................. AAAACGTCCTTTGTGTAATAAATAGATAAAATTATAC 4319 30 100.0 36 .............................. TTAAGAGCCTGTTTAACTAAAGTACAAAATCTCGCT 4385 30 100.0 37 .............................. TCTAAGTAAAATAAATTACAAAGAGTAAATAACCATT 4452 30 96.7 0 .............................A | A [4477] ========== ====== ====== ====== ============================== ===================================== ================== 7 30 99.5 37 GTTTAAAAGTAACATAGGATGTTTTTAAAT # Left flank : TAGTTTAGTTTTGAGGGGGATTAATACAATGTGTAAAAGTTTGCTTAATGAATATAATTTAAAAACTGATAAAGAGAGAAAAGATTTTATAAAGTTTGCTATACTATTATATAAGTTGAAACAGGACGACAAAGAAAAGTTTTATGAATATACAGATATATTGAAAGAAATTCTTAGAGAACAACAAGAGAGAGAAAATAATTAAATAATAAATAGATAAAGCACTTATAAGTACATAAAAGTGCTTTATCTTCCAAAATATGCTATAATTGTAGTATCAAATATATAGGGTGATTACGCATCCTAAGTGTGAGATTATCCCAAGCAATTGGAATTGATACTCACAAAGAAGATTACTAAATAAAGTAATTATCACCGTCCCAATAAACATTGGGTAAAAACATCTAAAATTTAAAAACACTTGGGATAAAACTTATAGACATAAGTAATTGCAATGATTTTAATGATTTATGTTGTGCAAAAATGTGTATTTTACAGTG # Right flank : ATTATAAAAGGAGGTGTTAAAGATGATAAGTACAAGAAAAATAAAAGTAAGATGTGATGATAGTACATTTTATACATTCTTTAGACAAGAGCAAAGAGAACAAAATAAAGCTCTAAATATTGGTATAGGTATAATACATGCTAATGCAGTATTACATAATGTAGATAGTGGAGCAGAAAAGAAACTAAAGAAAAGTATAGAAGGTTTACAAGGTAAAATTGATAAACTTAATAAAGACTTAGAAAAAGAGAAGATAACTGATAAAAAGAAGGAAGAAGTATTAAAAGCGATTGAAACTAATAAAAAGATATTAGATGGAGAGAAGAAGGCTTTTAAAGAATCAGAAGAATACAGAAAAGGAATAGATGAACTTTTCAAAAATACATACTTAAAATCTAATACATTAGACCATGTTTTAGATAGTATGGTTAATATTCAGTACAAAAGAACTTTAAGCCTAGTTACACAAAGGATTAAAAAAGACTATAGTAATGATTTTG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAAAGTAACATAGGATGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 6128-6555 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAADDG010000041.1 Clostridioides difficile strain MON005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 6128 30 100.0 36 .............................. ATGTTTATGTACCCATACTAAGTATAAAAATATACT 6194 30 100.0 36 .............................. TATACAACACCAGAAGATTATGAAATGGGAAGAAGT 6260 30 100.0 36 .............................. GTACTTAAAACAGAAGCATAAATAAGCACTCCTAAA 6326 30 100.0 35 .............................. GTAACTCTCTCCATGTGCTTACATCTTGTCTACTA 6391 30 100.0 36 .............................. GTACTTAAAACAGAAGCATAAATAAGCACTCCTAAA 6457 30 100.0 37 .............................. TTATTAACAAATATAATGATGAATATAGCAGCAAAAA 6524 30 86.7 0 ................G.....AAA..... | AA [6546] ========== ====== ====== ====== ============================== ===================================== ================== 7 30 98.1 36 GTTGAAGAATAACATGAGATGTTTTTAAAT # Left flank : AGATGGATTTGATAATATTATCTTAAGAAACTGGTCATATTTTGAATTGCAGAAAATGATTGAGTATAAAGCTGAAAGAGAAGGAATTACTGTAAGATATGTAAATCCAGCATATACAAGTCAGAAGTGTTCAAGATGTGGTGAGATAGACAAGGAAAATAGACAGACACAAGCAAAGTTTAAATGTACTAAATGTGGATTTGAACTTAATGCAGACCATAATGCAGCTATAAATATAGCCAGAAGTATAGAATTTGTATAATTAAATAGATATAATATAAATATAGGGTGATTACGCATCCTAAATGTGAGGTCACCCCAAGTGATTTGGGATAGGCACTCGCAAAGATAGTTGTTAAATGTAGCAATTATCACCGTCCTAGCGAATTGCTAGGTAAAAACATCCGAAATTTAAAAACACTTGGGATAAATTTGATTAATGCTAGTATTTACAATGGTTATGTTGTTTTATTTTATTTAAGAATGTGCATTTTTAAGTG # Right flank : TATTTATATAAAACACTTACTTAAAGAGTAGGTGTTTTTTTAATTGAAAGTAGGTGATTATAATGTAAAAAGTAATAAATAGGTAAAATATGTAATAATTATGTGTTATAATATTTTTAGGCAAGAAGATGTAATCTACAATTTATAGAGTGGAGTTCATGTATCAAAGAATTATCCTCCCAACATTTATAAGGGAGGTGAATATACATGGATAATTTTTTACAGGGTGTACTAGCAAGTTTAGTTGCCAGTTTAATAGTTTACTTAACTAGTAAGTTATTTAAAAAAGTAAAAAGCCACTCAAACACGACTAAGAGTGACTTTGACTTTAAACTTACAATCAAGTTTAAAAGAAATAAACATTAATTTTTAGAACTTCACTCTAGTTTCAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTAGAAGAAATATTGCCTATAATATTTTTTATAGTCAATAAAAAGATGAAATTTTTTATACACAATGATG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGAATAACATGAGATGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 16165-16319 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAADDG010000042.1 Clostridioides difficile strain MON005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================== ============================================== ================== 16165 21 100.0 46 ..................... AATAAAATAAAAGGTGTAGATGGTATAAATGCAGTAAAATTTACAT 16232 21 100.0 46 ..................... GCTAAGAAAAGCACATTTTTAGCTGTCAAATCGTAACGATTTACAT 16299 21 100.0 0 ..................... | ========== ====== ====== ====== ===================== ============================================== ================== 3 21 100.0 46 TCCATATAGTTAATCTAAAAC # Left flank : ATATCTCAACTGTTAAGCCATATTTTATCAAAAATATCGCTCACTGCAAAATCTCTACATTTTTATTATATCATAAAAATATTATTTTTTGAATATCTGTACCAATTTGTGGTATAATAAAAGCAAGGAAATAATTTACTTTATACAAGAGTAGCTATTTCCATCAAAATTGATTTAAAGAATTACTTTTTTAAACCACTCTTATTGGCCTTTGAGTGGTTTTTTATTTTCTCATACATGAAGGCTGATATAACACCAGCCAGTATACTCAATAAAAAATTTATCACCATACTGTTACACCTCCTTCCGTTATGGAATTTGGTATTCAAATATGGAAATAACCACTCTTAGCACTTTTCAATTATTATTTTCCTTGCTACAATTATTATATCATACAATTCTTACATATTTTACCAAATATTTCAATTAAGTACACAGATTTTAATATAAAAAAGCACCTACCATAAAAGTAAGTGTTTTTCAGTATTTTTAATTTTAAG # Right flank : CCCCAAAATAAACTTGGCATTTCCAATACCTACACATACGCATCTCTCTCAAATTTGCAGTGAACCATGAGTAGTACAATTGATAACATTTATCACACACCCTCAACGCCTTATATTGCAACTGTTAAACTTCAATTTATCACAAATATCGCTCACTGCAAAATCTCTACATTTTTATTATATCATAAAAATATTATTTTTGAATATCTGTACCAATTTGTGGTATAATAAAAGCAAGGAAATAATTTACTCCTACAAAGAGTGATTATTTTCAGTTGTTAAGTGAAAATATTATTTTTTTAAATCACCCTTATTGGCGTCTGGGTGATTTTTTATTTTGTCATAAATATAAGCTGATATAACACCAGCTAGTATACTTAATAAAAAACCTATCATATAATTTCACCTCCTTCCTTATTTGGAATTTGGCGTTTAATATGAAAATAATCACCCTTCGCACTTTCGATTATTTTCCTTGCTACAATTATTATAACATATAA # Questionable array : NO Score: 4.92 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:-0.5, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCATATAGTTAATCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.19%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //