Array 1 3910-2686 **** Predicted by CRISPRDetect 2.4 *** >NZ_WDOR01000016.1 Bifidobacterium bifidum strain BIOML-A15 scaffold19_size11621, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 3909 36 100.0 30 .................................... CGGTGTCGTCCTCGTCGAGTTGTTCTTTTT 3843 36 100.0 30 .................................... CATCACACGGCACCCTCGAAGGCGAGAGCA 3777 36 100.0 30 .................................... TTTGACGACGCCGAGCGTGGTCGCGGTCGC 3711 36 100.0 30 .................................... CGCGGTGAAATTCCCGTGGCAAGACTAGTC 3645 36 100.0 30 .................................... GAATTCTCAGCACTTTCCGAAGGCTTATCA 3579 36 100.0 30 .................................... TGCCGTTACAATCGAACCCAGCTAAAGACG 3513 36 100.0 30 .................................... GCGATGCGGACACATGGCATAAAATGCGCA 3447 36 100.0 30 .................................... TTTCCACTGTTGTTGTGTTGTGTGTTGTGT 3381 36 100.0 30 .................................... TAAGCCAAATCGGACTACCGCCGTCAACGT 3315 36 100.0 30 .................................... TTGTGGTGATGTTATTGCAGCCGAAATACA 3249 36 100.0 30 .................................... CAACAATCTCAACGGCATGGCCAGCATTGT 3183 36 100.0 30 .................................... TTTGACGCACCGCTAACAATTTCGGACTGC 3117 36 100.0 30 .................................... TGACGTGACGTTTGGTAGCTGCTATGTGAC 3051 36 100.0 31 .................................... TACAGCAGCAGAAAAAGAAGAGCACGTATGT 2984 36 100.0 29 .................................... TCGATTCACCACAATAAACCAGATATGTA 2919 36 100.0 30 .................................... AAGTCGGTGATCGCCGCCGCTGGGGTGAGT 2853 36 100.0 30 .................................... AAACTCACGCCGCTTAACTTGGCCTGCTGT 2787 36 100.0 30 .................................... TCATGTCTAACTATATTCGTGGTTAGATAT 2721 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== =============================== ================== 19 36 99.9 30 GTTTCAGATGCCTGTCAGATCAATGACTTTGACCAC # Left flank : ATTGCGCGGATGAAGTGGATTATAATGCTTTGTTCCAGAAGCTTGCTGTCAAGAAAATAATCGAAGGATTTACGCCGGAGCAAATCAGTAGATTATTGTCTTTGCAGGCTGAGTTAAAAACAATTATTCAAGATGAGATATGGGGTCAAAATCTACCTCTGACTATTCCCTGCGATTTGGATTTGAAAGCAGCAATTGCAATGGCCAAACCTCGGATTGACACGAGTTCTTTGGGATCCTTGTATGATAAAATTTCGACGGCAGTAGATACTGCCGGTGCTCTTGCCGAGAGCAGGATGCTGGTGACGCTTCATACAACTCAATACTGTGATAACGACCAATTACTTTATCTGCACCGTACTTTATTGCGGTACCAGTTGCAGCTTCTTGACCTGGAATGCTGCAGCAAGAAAGTCATGCTGACAGAGGGGATGAGCCACTATGTCGATGAGGATTACGTTCAGTTCTCATGAACTGTTCAGGAATCCTTAAGGCTATCG # Right flank : GTGATGCGCAATAGTGTTAGGGGCACCTCTGTTGCTGTCTTCTGGATAGCTTCCGGGGTGTGCTTTTGATTCTGGTGACATATGGGAAACGATTGATGCACAATATTCGGACTGTTATAGTGATGTGTTTTGTCAAGTTGTTATAGGCCAGTGTGGCGTGAGTTTTCCTTCCGAAAAAGCGGTAGGTTTTAGTCCAGTTCGGAACTGGCCTGTCATTGCTCGTGTTTTATTGTTTCATTGCATAAGAGCATGAGTCCTGCGATAGGACTCGCCCTCGAACCTGAGCATCCTGCCGTGATGCACGGTCCGGTCGATGATCGCCGCGGCCATGTTCGGATCCCCGAACACCCGGCCCCACCCGCTGAACTCGATGTTCGTGGTGTAAACGATGGATTGCATCTCGTACGCGTTGGTGATGACCTGGAACAACAACCGGCTGCCTTCCTCGTCGATCGGCACGTAGCCCAACTCGTCGATGATCAACAGGCGGGCCTTGCCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATGCCTGTCAGATCAATGACTTTGACCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 1038-10 **** Predicted by CRISPRDetect 2.4 *** >NZ_WDOR01000095.1 Bifidobacterium bifidum strain BIOML-A15 scaffold698_size1188, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1037 36 100.0 30 .................................... TGAACTGAGCTGTGTACTGGCCGCGCGTTT 971 36 100.0 30 .................................... TGGCCGTACCGTCATTGTCGATGGATGTAT 905 36 100.0 30 .................................... TTTGACGCACCGCTAACAATTTCGGACTGT 839 36 100.0 31 .................................... TCCGGCATTCGCGTTGTAATGCTCTTGCGTA 772 36 100.0 30 .................................... GAGCTAATCGGAGAGGATTCTCAGGAGATT 706 36 100.0 30 .................................... CCGCGTTGCGATGCATAGGACGTTCCGCGC 640 36 100.0 30 .................................... CAGCTTTGGTGGTGCGTGGACTTATCTCGC 574 36 100.0 30 .................................... GCGCGTCCAGTAATTCCACGTCGCTCACAT 508 36 100.0 30 .................................... GTTTCTACTGGTGCTGATAGACTATATAAC 442 36 100.0 30 .................................... TTTTGGGAGCTTGATTCTGCCGTGATTTGA 376 36 100.0 30 .................................... GACGGCAGCCGCCACCGACATGACCGCAAA 310 36 100.0 30 .................................... GCATAAGATCGGCATGGCGGGCGTGGACTA 244 36 100.0 31 .................................... TCAGGGATATCCTCATCTGATCGTAGCCTGT 177 36 100.0 30 .................................... GCAAATATCGTCCAGTTGTTCGGTACACGT 111 36 100.0 30 .................................... AGAACGTCGTTGCGGCGAAACCCTTCATCT 45 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 16 36 100.0 30 GTTTCAGATGCCTGTCAGATCAATGACTTTGACCAC # Left flank : TTACTTTGACCACCCTATGTACGTAGGCCTGATCGTTCCATC # Right flank : CCGAAGGAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATGCCTGTCAGATCAATGACTTTGACCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //