Array 1 1957763-1960375 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134306.1 Yersinia pseudotuberculosis strain NCTC3571 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1957763 28 100.0 33 ............................ AGATGGAAAAGAAGTATTAACTAATCCACATAT 1957824 28 100.0 32 ............................ CGCTACCGTAATAATGCGTGGGTGAGAAAGTT 1957884 28 100.0 32 ............................ AAAGAGAAGCCCCTCATTATGAATGATCGGTA 1957944 28 100.0 32 ............................ AAACTACTATTAATTTATTAACTCAAAATGTC 1958004 28 100.0 32 ............................ TCGTTGAAAGAACACATGTTGATGATGATTGG 1958064 28 100.0 32 ............................ ACTAATGTTTATATATCTTTAATATCTGAGGA 1958124 28 100.0 32 ............................ ACCATAAAATGTATGGTTATATGATTTTACCC 1958184 28 100.0 32 ............................ TTGTAGCTTTAACACTAGCAGAACTACCGACG 1958244 28 100.0 31 ............................ TGTAGACGCTTATGCTCAGGTTCTACTAACA 1958303 28 96.4 32 C........................... AACACGTTGGATGAATCACAACAGTTAATTAT 1958363 28 100.0 32 ............................ AGCCACGTTCTCCCACCGGTACGGCGATAAAT 1958423 28 100.0 33 ............................ CCACAGTATCATTATTATGACCGATGCCGACGT 1958484 28 100.0 32 ............................ CATATAAACCGGTTATTTCATAAAGATTTTTT 1958544 28 96.4 32 A........................... ACCTCGTTCACCTGAGCGTTTGACTTCAATAT 1958604 28 100.0 32 ............................ TATGTAGATGCTTTAAAAGGAGTGAAGAAAAC 1958664 28 100.0 32 ............................ AACACGTTGGATGAATCACAACAGTTAATTAT 1958724 28 100.0 32 ............................ TTAAAAGTGATGCTAATTCAGGAAGTGCGGAT 1958784 28 100.0 32 ............................ AGTCTGGCGGCGCATTATCTGGTTTTATGTAT 1958844 28 100.0 32 ............................ ATATTAAACCACACGATTCAACTACAAAAATG 1958904 28 100.0 32 ............................ AGACACAGGCGAAACCACATTCTATATGAATC 1958964 28 100.0 33 ............................ AGCAGCAATGGGATGAAATTAATAATATTAAAA 1959025 28 100.0 32 ............................ TATCTGGAATCCCAGAAGTATTATTAGCTATT 1959085 28 100.0 32 ............................ AGACACAGGCGAAACCACATTCTATATGAATC 1959145 28 100.0 32 ............................ GTGTCAGCTTTTAACGCATATAATGAACCAAT 1959205 28 100.0 32 ............................ TCGGAATACAGATTATTGCTGGTACTGTCAAC 1959265 28 100.0 32 ............................ CGCTAGACGCTTCATTTTTCATTGTAACTCAA 1959325 28 100.0 32 ............................ AAGTTAAACAGTATGTTGACGATGAAATAAGT 1959385 28 100.0 32 ............................ GAAAATCACATTGCCGGCGTGGATGAACAAGG 1959445 28 100.0 32 ............................ ACCAGCCTCCCAGCTCATAACCGTACGGCCAA 1959505 28 100.0 32 ............................ TGTAAATACCCGGACAAACAAGACAACTCCTG 1959565 28 100.0 32 ............................ CTCCGGAGTCACAACCATCTCAGAACAGATGT 1959625 28 100.0 34 ............................ CCAGATTTGATTGGCGTGGGTTACTACGTTGAAT 1959687 28 100.0 33 ............................ AATTGACACTAGCACGTTACTTAATAGTCAATA 1959748 28 100.0 32 ............................ ATAAGAAAAATTATGAAGAGAAAAACCACATG 1959808 28 100.0 32 ............................ TTTAGATGCCCGATCTAATTCCTCTTGGGCTT 1959868 28 100.0 32 ............................ GCATAGTTAAGGGGTAAGAGATGAAAACTGAA 1959928 28 100.0 32 ............................ ACCCAACCTCAAAGCTGGATGACAAGCGCAAA 1959988 28 100.0 32 ............................ AGTGGTGATTACGCAATGCAGCAAACATATAA 1960048 28 100.0 32 ............................ GTGGAATGGCTATTGCTATCGCTCGAGAATAT 1960108 28 100.0 32 ............................ TCGCGAACGCGCTCAGGTTCACGGAATGGCGA 1960168 28 100.0 32 ............................ ATCTGCGCCAAAGAAAATGCCATTCAGATAAT 1960228 28 96.4 32 .........T.................. AACTACTAGAAGCTTGCCCATCTTACCTTTTC 1960288 28 100.0 32 ............................ ATCATGAAAGACATTGTTCGCCAGTCCCCTGA 1960348 27 85.7 0 ...................-A.A.C... | T [1960372] ========== ====== ====== ====== ============================ ================================== ================== 44 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGGTTGTTGCCCAGCGAGGGGAGAGACATATTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : ATTCTGGACCATGCGCTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2929611-2927781 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134306.1 Yersinia pseudotuberculosis strain NCTC3571 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2929610 28 100.0 32 ............................ AAACGCCGGAAGAAAAAGCCCAACACGGGGAT 2929550 28 100.0 32 ............................ GCACTGACTTTAGTTATAGCGCGATAGCCGAC 2929490 28 100.0 32 ............................ TGCTGAGATTCCAGTATTCTGAATTAATTTAC 2929430 28 100.0 32 ............................ TCTAGTACGCCAATTTTGTGATTCTTTATAAT 2929370 28 100.0 32 ............................ CTTCAAAATAATGTTAATGCTAGGCTAGAGGC 2929310 28 100.0 32 ............................ CAGTTGAAATACATGTTCAAGGAAATGGTTTA 2929250 28 100.0 32 ............................ AGACACAGGCGAAACCATATTCTATATGAATC 2929190 28 100.0 32 ............................ TGAGCGATGGAGTGCCGCAGCTACACAACAAC 2929130 28 100.0 32 ............................ TTAACAGACTCAATAAACTGTAGAACGTTTTC 2929070 28 100.0 32 ............................ AGTCTGGCGGCGCATTATCTGGTTTTATGTAT 2929010 28 100.0 32 ............................ TTTAAAACGTGAGCAATAGATATGCATAACCA 2928950 28 100.0 32 ............................ CTTGGGAGCATGAGAAACGTATCCATCAGTTG 2928890 28 100.0 32 ............................ GTTGTGGGGTTAAATCGAGTTAGCGATACACT 2928830 28 100.0 33 ............................ CATTTGAGTGAAAGTATCTCCCCAAGCCTAGCC 2928769 28 100.0 33 ............................ GTTGCCGCTTAATGATGATGCTGTGATCATCAT 2928708 28 100.0 32 ............................ GCTAATGGTGCTGAAGGAACAGGGGGGGTGGG 2928648 28 100.0 32 ............................ ACGTAATCCACAACGAAATATAATCTAGTGCT 2928588 28 100.0 32 ............................ GGCTTCGTTGCCCCACAACGCGGGGACCAACT 2928528 28 100.0 32 ............................ AGACACAGGCGAAACCACATTCTATATGAATC 2928468 28 100.0 32 ............................ AATTTATTATAAGTGGAAATAATACTTGACTT 2928408 28 100.0 32 ............................ TCAAGTACCTAGGCATTAAAGTAATTAATTCA 2928348 28 100.0 32 ............................ AAGTAGCAAAAAGATTTTTAGTATAGATAAAT 2928288 28 100.0 32 ............................ AGCTGTAGGTTCGTCTGCGTCTGTTATGGCCC 2928228 28 100.0 32 ............................ ATCCAGGCATCAGACCCGACAGTTGTGACCAG 2928168 28 100.0 32 ............................ AGCCCGCTGGCTTACGACCCGAAGGGCGGTGA 2928108 28 100.0 32 ............................ TACTTCCCTGATCTGCGCCAACGGCTGTTTAT 2928048 28 100.0 32 ............................ GTATAATTATTAGCATTATTTAATGTTGTTTG 2927988 28 100.0 32 ............................ GAGCATTCCGCGCTCGTCACGCGCCCTTACTG 2927928 28 100.0 32 ............................ GGTATCGACAAACAGGCACATATACAGTTGAT 2927868 28 100.0 32 ............................ TTACACGCTGGACGGCCAGGGAGACGAGAGCT 2927808 27 89.3 0 .....................CC.-... | T [2927783] ========== ====== ====== ====== ============================ ================================= ================== 31 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGTCAGAGCGTATTGCCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACGCCACCACCACCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTTTCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAAGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : TCTCAGCTCTCTGGCGGCGTTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3574056-3573129 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134306.1 Yersinia pseudotuberculosis strain NCTC3571 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3574055 28 100.0 32 ............................ AGACTGGCCGTATCGCCATTGCGGGATGCGGT 3573995 28 100.0 32 ............................ TGAAACAATAGCAAACAATAATTCAGGTATTC 3573935 28 100.0 32 ............................ TTATCAGGGTGAGGATAGACACGACCCCAAAA 3573875 28 100.0 31 ............................ ATGCCACAAATGAGTTTGTTTCCATAGCAGG 3573816 28 100.0 32 ............................ TGTAGCTGTAAATCCAACTGGCATTGGAGGAT 3573756 28 100.0 32 ............................ ACCCACACGCCGCCTGCCCATTCGCCGGTAAC 3573696 28 100.0 32 ............................ GATCTACTTCGCGATACCGCCCATCGCTGGCT 3573636 28 100.0 32 ............................ TGTCCAAATTTAGGAATATAGAGAATGTTTTT 3573576 28 100.0 32 ............................ ACGTAATCCACAACGAAATATAATCTAGTGCT 3573516 28 100.0 32 ............................ AATCATCAGTAACGTGTGTTCTTTCCACAAGA 3573456 28 100.0 32 ............................ ATTTGCATAAACTTCACACGCTCGACTTAAAT 3573396 28 100.0 32 ............................ ATAGTGCCGGGGCGATGACAAGAGCAGTGATC 3573336 28 100.0 32 ............................ GAAAACGGAACATTACAATCCGGCGGATTACA 3573276 28 100.0 32 ............................ CTATTGTGTTGAGCAACGGCGCGGAGCTGCAC 3573216 28 100.0 32 ............................ GGTCAGACTATGCGCGATGGATTGATTAAAGT 3573156 28 92.9 0 ........................T.G. | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CATTCAGGTTATATTTTATCAGGGATAATAGGTGAAATAGGGGGGAGGGGCTAATGGTAAAAAGCCTCTTATTGATCCAATATATAATAATTCAGATAAAACGCGCATTGATTAGGATGTTTCAGACATTCGCGTGGGAATTTTCTTACTTTCATCACAGGAACCTCATTAGAGCACGCCAATATTCTTTTTTAATGTACCTAATAACCTCATTTAGTTAATAATCCAATTGACCTGAACCCTAAAAACGAAGCTATGGCAGAGTCATGCCCTGAGAGCGTTTCAGGGCGTTGGTACAGCAGATGATAAAGATCACGATAATAACGCATGGGGATTCTTAGCCTATTCGCATCAGGGGAATCATTTTTTGACCCTATTTTTTTAGCTATGGCTAACTCATTGATTTTATATCCTGCTTACCGAGGGTTAAAAAAAATCATTTTTTACCCTTTGGCGAAAGAATTATTTTACAAACAGTCTGTTACCCGTATTATCTTACT # Right flank : GGGTCACTGTTTGTGCACCAGCGCGGCCCCGGCCTGATCCTCTTGCTGGTAGGCCAACGCCACGACCAACGACTGCACCAGACAGAGCGTGGCTGATTGAGATCGGAAGGCATCTACCTGAGCCTCTTTCACCACAAAACAGAGATCGCTGAACGTGGCGAGCGGGCTTATCTGGCTGTCAGTAATGACAATCTGCCGGGCACCCGCGCTAGCGGCTATTTCACTGACCATCACGGTCTCTTCGGCGTACGGAGAGAAACTGATAGAAACCACGATATCGCGTGCTTTAATGCCGTTCACCTGCTCACGTAACATCCCCCCGAGGCCATGGAGTTGCACCGGGCGACATTCCAAATGGCTGAGTGCGTAGGTCAGATAGGCGGCCACGCTGAACGAGCGGCGCAGGCCCACCACATAAATGGTATCGGCCTGAGCAAGTAGTTCCACCGCGCGTTGCAGCATCTCTGGTTCAGTACGTGCCGCCAACTGTTGTAGTGCCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //