Array 1 1032643-1033463 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028900.1 Salmonella enterica subsp. enterica serovar California strain CD-SL01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1032643 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 1032704 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 1032765 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 1032826 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 1032887 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 1032948 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 1033009 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 1033070 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 1033131 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 1033192 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 1033253 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 1033314 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 1033375 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 1033436 28 79.3 0 ...........C...A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1050104-1051842 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028900.1 Salmonella enterica subsp. enterica serovar California strain CD-SL01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1050104 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 1050165 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 1050227 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 1050288 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 1050349 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 1050410 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 1050471 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 1050532 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 1050593 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 1050654 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 1050715 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 1050776 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 1050837 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 1050898 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 1050959 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 1051020 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 1051081 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 1051142 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 1051203 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 1051264 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 1051325 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 1051386 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 1051447 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 1051508 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 1051569 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 1051630 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 1051691 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 1051752 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1051813 29 93.1 0 A...........T................ | A [1051839] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //