Array 1 850-27 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYJR01000063.1 Salmonella enterica subsp. enterica serovar Kibusi strain 108ev NODE_36_length_44298_cov_10.230183, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 849 29 100.0 32 ............................. GGTTTGGGTTGCAGGTAGAAGCCAACCTCTTC 788 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 727 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 666 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 605 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 544 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 483 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 421 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 360 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 299 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 238 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 177 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 116 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 55 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GCCATTCAACATCGCACTTAAGAACTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 65095-63722 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYJR01000037.1 Salmonella enterica subsp. enterica serovar Kibusi strain 108ev NODE_20_length_74067_cov_10.927755, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 65094 29 100.0 32 ............................. GGCAACGGGCCATACGCGCCCGTTATTTCGAT 65033 29 100.0 32 ............................. CCGTATTTTTTGACAACCTGGAATCACAAAGA 64972 29 100.0 32 ............................. CAGTTATTTGACAATTGGTACTGGCATTAAAT 64911 29 100.0 32 ............................. CAAAATGGGCTTGTGACCTGGAATGATAACGC 64850 29 100.0 32 ............................. GCTGGTATTGGCACCGGAAACAACACGAGAAT 64789 29 100.0 33 ............................. GCAGATTATGCTAAATCGACGGCGGCGCCCTGC 64727 29 100.0 32 ............................. CTCTGCTCACTTGATGACACAATCTGAATAGT 64666 29 100.0 32 ............................. GCAAACGCCGTGCGCGTCGCACGCTTGACCAG 64605 29 100.0 32 ............................. ACTGACCAGGTGCAGGAACTGCCGGTCGCTGA 64544 29 100.0 32 ............................. CCTGTACCTCTCCTGTAAATGTTCCGCTAGTT 64483 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 64422 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 64361 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 64300 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 64239 29 96.6 32 .............T............... CCATTCACGCCATACGCCGCCGTCACATAGCG 64178 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 64117 29 96.6 32 .............T............... TCGGCAGCTACTTCAGTGTTAGGCGGCATCCA 64056 29 96.6 32 .............T............... CCACGGCGCAGGAAATCTCCTTTGTAACAGGG 63995 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 63934 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 63873 29 100.0 32 ............................. ATATTCAAACGGCGCGGGGGGAGACATCCGGA 63812 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 63751 29 96.6 0 A............................ | A [63724] ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //