Array 1 370053-369719 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFXZ010000003.1 Pectobacterium aroidearum strain KC20 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 370052 29 100.0 32 ............................. CGATTGATGATCGACTCGCAGAAATCGCCGCC 369991 29 93.1 32 ..G..........T............... GTTTTTTTGGCGTCCCGAAAGTTATTAACTGA 369930 29 96.6 32 ............T................ CGGGTAGCCTGATCTCCCCGGCCAGTATTCCT 369869 29 96.6 32 .............T............... GTCACTGGTACATAAACTCCTGCAGCTATAGC 369808 29 93.1 32 ..G........A................. GTAATCAAATTCCCCGGACCTGAGTCGGGGCA 369747 29 93.1 0 ............T..............G. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 95.4 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTTCGATGGGTGAAAATCAGATGTGGTGTAAAGAAGGATGCGCTTTCCTTCTTAGTATGTCGTCGTTGTCCTACGCTTGACTTCAAGTATCTCGCACACCTGTGGTATTTCGTTGATTAGTTCAAAGATAATGCGGTAATCCCCAACCCGTAGCCGATATTGTTTACCAGACGATTCGAGTTTTTTCAGGTCCAGATTCACATCTGGAAATGTACTCAGCTCGCCCACTTTTTCTTTGATTCGTTTTCGATATCTGGTGTCAATGGTGCCGAGTTGTTTTAATGCCCGTTTTGACCAACTAATCTTAAGCATGCATCCCTCAAACGAAATCCTTCCCTGATATAAGTTAATTATAAGACAATTTAAGGGTTATGTTCATTTTTCTTATTTTTTGTTGATGATTATGCTGTTCCTTCAGGGACAAATCGCGGGAATTTGACGTTGGATCAGAGCCATATAC # Right flank : TTATACCCCTTGTTGCATGTTGGTCTACATGTTCCCCGCATGGGCCAAATCCGGCTGCTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTGCATTCACCGTCACGGTGATGCGCGATGCCCATCATTTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTCTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAGCATGCTGAGAAAGCGGCACTGTCCGAACAGCTTCAGTCTTATCAGGCGGGTAGCGGTGCCGTTCCTGTTGGTCAGACGACGCGGTATGATTTCACCCGCATTAGCCCCGCCGAGCTGTATGAAACGGTAGAAGGCCTTGTCAGCAGTGGGCGGTTGGGGCGTGAAGAGGGTTCCGCGCTACTGGGTTTTATCTCGTCGCCGCGCGAAAATGTCGGCAGTGTGCCGCCTTCCAATGTCTTTCAGCCTATTAATG # Questionable array : NO Score: 3.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 372051-370923 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFXZ010000003.1 Pectobacterium aroidearum strain KC20 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 372050 29 100.0 32 ............................. CCGATTCTCCCCGTGATAAAGATTATCTTGTT 371989 29 100.0 32 ............................. GTTATAGATGAGTAATTTCGGCATATACACAT 371928 29 100.0 32 ............................. GTATCGTTAATTTCGCCAACGACACTGGATAT 371867 29 100.0 32 ............................. GAAACCATAATGATCACAATCATAGAATTACC 371806 29 100.0 32 ............................. GGGCCTGTCCATCCATGCTGATCACAACATCA 371745 29 100.0 32 ............................. ATGAGCCAAATCAACAGCACGTCTATCAGCAC 371684 29 100.0 32 ............................. ATATGTTCTCCAACATCAAGGCTCAGGCATGG 371623 29 100.0 32 ............................. AACGCGCCAGTTTTGAGATACTTTCTGCGCTT 371562 29 100.0 32 ............................. TGATTTGCTTGTCGCCCGGTAGCCCTTCCCCA 371501 29 100.0 32 ............................. TTAACACCCGCTATGTACCATTTCTCACTCAT 371440 29 100.0 32 ............................. TATAATTATTGTAATGCCCTTTATAGTCTCCA 371379 29 100.0 32 ............................. TTCATCCCAGCCCGCGAAATTCGCCAGACGTT 371318 29 100.0 32 ............................. TTTGCAAATCTCATGGCGGACGGTGGGATCAT 371257 29 100.0 32 ............................. AGATTAATAATGTGGTGGGGATGGAGGTGATC 371196 29 100.0 32 ............................. CTCGGTGATGTGTCCGGGGCGGCTGACCGCAT 371135 29 100.0 32 ............................. CGCACTGGTGAGCTGTGCGCTACAGGTGGAAA 371074 29 100.0 33 ............................. TGGCACCCCACGGGATGCCTATATCTGCACAAC 371012 29 93.1 32 ..G.........T................ TCCTATATAGACACGACAGCGGCCAGCACGCT 370951 29 89.7 0 ..G..........T..............C | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.1 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAAGAGGTGTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGATGATGCACAGCCGCCTGCGATCCCAGAACCGAAACCGTTTGGCGACAGTGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAGAATGTCCCACTGCGTTTGCGTGGCAGATTGGCGGTGTGGTTACTGGAAGTCCGTGCGGGAGTGTATGTCGGTGATACTTCACAGCGGGTGAGGGAGATGGTCTGGCAGCAGATTATTGAACTGGCGGAGCAGGGCAACGTTGTGATGGCGTGGGCGACCAATACGGAGTCTGGTTTTGAGTTCCAAACGTGGGGAGAAAACCGCCGAATGCCGGTAGATCTGGACGGTCTGCGGTTAGTCTCTTTTGCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTAATTTTAGA # Right flank : TAGTCCCTGGAAGCGGCTAAAGGATTAGCTGTTCTGGTTCGCAGTGGTACAGCTTAGCCAGTTTTTCTCGGGTGCGTTTCTGCGGCCTTGAATCTGGGGATTCAAGCTGAGAGACGGCTGCTTGGGTCATGCCAAGCGCGGTTGCAACTTCTTGCTGAGAAAAGCCTCTGAGAATTCTCCAGGCTGCCTGTAAGCTGACGTCTTGATCAATGTGGATGCTAACCACTTCGTGAGGAATAGAGACGTCATCCTCTGCGCCATGATCGTAGGGAATGCTCTCATAGAGGGCGGGATCGTCAGCATTTTCAATAAGTTTCTGATATAACTCATACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTTCGATGGGTGAAAATCAGATGTGGTGTAAAGAAGGATGCGCTTTCCTTCTTAGTATGTCGTCGTTGTCCTACGCTTGACTTCAAGTAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //