Array 1 44-683 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFJH010000121.1 Escherichia coli strain CE1706 contig00121, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 105 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 166 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 227 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 288 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 349 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 410 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 472 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 533 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 594 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 655 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 11 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGGATAAACCGCCACCGTTTTCGCCCACCAGGGCGCACAACCCG # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1470-160 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFJH010000081.1 Escherichia coli strain CE1706 contig00081, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1469 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 1408 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 1347 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 1286 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 1225 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 1164 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 1103 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 1042 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 981 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 920 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 859 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 798 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 737 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 676 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 615 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 554 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 493 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 432 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 371 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 310 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 249 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 188 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAG # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTTATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //