Array 1 7224-3893 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBJM01000047.1 Schleiferilactobacillus oryzae JCM 18671 strain SG293, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================================================================================================================= ================== 7223 36 100.0 30 .................................... TCGTTAACGTAGTGGATACTACGGCATATA 7157 36 100.0 30 .................................... GACTGGACGTAGGTGGGGTACTGTTCCCAG 7091 36 100.0 30 .................................... ACAATGGCTTTCTGTAACTCTGGAACTTTC 7025 36 100.0 30 .................................... TATCTATTTGCTTTTCCCCGTAACTATTGC 6959 36 100.0 30 .................................... CCGCCTAAAACTCCTAACACGGTGACACCT 6893 36 100.0 30 .................................... CACTGTCAACTTGGCATAGTCTGCTGATGG 6827 36 100.0 30 .................................... TGGTGAAAGCCGTTCAGATATGGATAGCAT 6761 36 100.0 30 .................................... GCTGTGCCTCCAATAGTTCTGGGTCCTCGT 6695 36 100.0 30 .................................... TCGGACTTTAACCGATCTAGTCTGCGGACT 6629 36 100.0 30 .................................... CAAGAAGCGGGAGAACCGGTAAGAACACCG 6563 36 100.0 30 .................................... TTGATTTTACTAATCTCACTGTGAACGGAG 6497 36 100.0 30 .................................... AGATATAAAGATCTATTAGACCGTGGTGTT 6431 36 100.0 30 .................................... ATATACTAAGAGACTGTAGTCGGGCTCTAT 6365 36 100.0 30 .................................... AATCAGTTATAGCCAAGAGTGTGGACTACT 6299 36 100.0 30 .................................... CAAACTCATAAAGATTCCTTGCACAGAACG 6233 36 100.0 30 .................................... TGACGAAATGATTCATTAGCCAACGCTGTA 6167 36 100.0 30 .................................... GTTTTGTGCTGTCCATGTTCCTCCAGCCAT 6101 36 100.0 30 .................................... AAGCCAAGAGTGAACGGGGAGCATTTGTTT 6035 36 100.0 30 .................................... TTAACGTTGCTGGTGTAATTCTTTACCTCG 5969 36 100.0 30 .................................... TAACGGAGGGCTATAGACATGGCTGAACAA 5903 36 100.0 30 .................................... AAAACTTGGTCTTTGATTGAGGAATCTTAA 5837 36 100.0 30 .................................... TTGTGTTTTACGGCCGGACCATTGTGATGA 5771 36 100.0 30 .................................... CTAACGTGTTTTCGTTGGTTGTCTCGGTGG 5705 36 100.0 30 .................................... GGTTAGCTAAGAGTAACGACAGCAACCCTA 5639 36 97.2 30 .....................G.............. ATGACGAGCCTTTATGTATTATCTCTGGTG 5573 36 100.0 30 .................................... CACTTTTATTAATTAGTTTATTGTTAGTTT 5507 36 100.0 30 .................................... AAGGGGGATTTTGTATCCAGTAACCAGGTT 5441 36 100.0 30 .................................... AAGTTAATGGAACACAAGTCAATCCATACA 5375 36 100.0 30 .................................... CCACGTTGACCAGCTGGTTATCCACGTTGG 5309 36 100.0 30 .................................... AAAGTTTTAAGCGGTGAAATTGTTGCTGGT 5243 36 100.0 30 .................................... CTGTCACCACGTTCACGAATTAACAGCGGC 5177 36 100.0 30 .................................... ATGTAAAGACCCATGTTACACCTCCTCAAA 5111 36 100.0 30 .................................... ATGTGCCAATTTTTACGACAGATACACCTA 5045 36 100.0 30 .................................... AATATTATGATTCATTTTCGGTTAGATACA 4979 36 100.0 30 .................................... AAAACAGAGCCCTGTCTAACTTGCAACTCT 4913 36 100.0 30 .................................... TGAATGGGCATAAAGGAAAAAGCGCTGCGC 4847 36 100.0 30 .................................... TAAACATTAAACTGGAAACACTGCCGCAAT 4781 36 100.0 30 .................................... AAAACTACAAAGAAGTCACTGACAAGTCTG 4715 36 100.0 30 .................................... CATCGTGATCGTCAGCAACCACTGCGTCCG 4649 36 100.0 30 .................................... GTATTGCGGATATTGTAGTGGTGTGACTGA 4583 36 100.0 30 .................................... AAGATAGTTGCCGCCTGTTGACCAGTGGCA 4517 36 100.0 30 .................................... ATAAACACTGATAAATAGGGGATTAGATGA 4451 36 97.2 30 ...................C................ AGGTGGTCAGCGTCTGCGGGCAAGGGCTTC 4385 36 97.2 30 ....................T............... GTTACGTGCTTCTGGAGCGAACGTACCCTT 4319 36 100.0 30 .................................... TCAATAATCCATCCACGAGCGCCCGACAAC 4253 36 100.0 30 .................................... CAGCCATGTCTATAGCCCTCCGTTATTGTT 4187 36 100.0 30 .................................... CAACAGCCATATTTGTTGCCTCCTAATTTT 4121 36 86.1 157 .............A.........C..A...C.T... CACCCCGGTGTTGATTTTCTTAATCCTGATTAGTTCAGAGGAGGAATAGACCAATAGCATCAGAATGACGTTCAGCTTTGTGATATAATCAAGCATGCGTTCACAATGGAAAAGTAAGGTTATTTGATATAGATATGGTAATATATTTTCTCTAGTA 3928 36 91.7 0 ..............................A..A.T | ========== ====== ====== ====== ==================================== ============================================================================================================================================================= ================== 49 36 99.4 33 GTTTTAGAAGAGTGTCAGATCAATGAGGTTTAGTCC # Left flank : AAATAAAGTATTTGAGGCACCACTTCAAAAGCGATTAGTTGAAGTACTGGACGATGATGCCAGAAGCAAGTTGTTTGAGTTAGATAAGGCGCTGAAATCGGCCGTATTTGATGCTAGCTTCAGTCTAAATTTACCGTTAGCAGTGGGAAATGATTTTGATCCGTTAAAAATGATTAAGTATAGCGGAATTGCTTTTGCAGAGGAGATTAAGAGTGATCCCTATGATATAATTGAAAGTGTAATTAAGGTCGCTTTTCAACTTAAAATAACTAAAATTATAACCTTAGTGAATGTGCATAATTATCTCAGTGTCAACCAATTCCATGAATTGGTGAGTGTAATTAAAGCACTTGATCTGACAACTCTATTCATTGATTTCTCAGAAAGTAACCATTCTGAATTATTTGATGAATGTCGTTATAGCTTTGTTGATGAAGATTTTATTGACTGGCGTAATTAGCTCATTTAGCTCTTTATGAGAGCTGAATGAGCATCGGACG # Right flank : GCTGAACGTCATTATGAAAATGGTGTGTTTTTCTAAATCATCGAACGCAAATCAGCTTAACTTGGTGCAAAATACTGAGTTGGCTGATTTTTTTTTTGCTAAAATCTTTCCCCTCAAATTTTATTTCTCCCATAAACCGTTTTACTCCTTTTCTCATTCTTCCATTTGCGGTATGTTATATCAGATAAACAAAAATAGACGATGGGATGTGGAAGATTTTGAAGGCAAAAAGTTATCCTCTGGAAAGTATTGCACCGGAACATCGGCACATGAATTATTGGGACATGTTCGCGACCTGGGTGGGCGCAAACGCCAATAATGGTACATGGTTCATCGGGGGCGTCATCGCAGCGTGTGGGTTGTGGGGCGGCGTCAAAGCGTTAATCATTGGCTCCGCGATTGCGTACGTCTTTTTATCACTAGTGGGGTACATTGGTTATAAAACGGGTGTTACGACGACCGGATTGTCACGTGCGGCATTTGGTATTCGGGGGAGTGTT # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGAGTGTCAGATCAATGAGGTTTAGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //