Array 1 244039-245030 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUKR01000003.1 Chromobacterium violaceum strain 16-419B 3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 244039 28 100.0 32 ............................ TGTCCGCCCTGCCGCCGCCGGATGTCGTCGAA 244099 28 100.0 32 ............................ AGCAGGTCCTCCACAAAATGCCCCTGGGCGGC 244159 28 100.0 33 ............................ TGAGCAGAAAGCCCGGCCTTCAGCACATCATAC 244220 28 100.0 32 ............................ TGCAGCACATGTTGGATGGACTGGCAGACGAA 244280 28 100.0 32 ............................ GCTTGGCCTATCTGACCGACGCCGAGCGCCCC 244340 28 100.0 32 ............................ AGCTCCCGCGCCCAGCGAACCATGTTGCGGCG 244400 28 100.0 32 ............................ ATTTTGAACCTGATGCGCGCCTCCAGAAGGAA 244460 28 100.0 32 ............................ TGCAGCTGCTCGGACAGCCGGCGCCCGATACC 244520 28 100.0 33 ............................ CTGCGGCGCCCAAACCGCGCCGCGCCAGTTCAA 244581 28 100.0 33 ............................ TCCGCGCTGGCGTGGGCATACAGCCTTTATCTG 244642 28 100.0 32 ............................ ACGTAGATCGGGAAGGTTGAACGTAGTCGAAC 244702 28 100.0 33 ............................ ACGACCCTTTCCGGTTATGGCATCACGGATGGA 244763 28 100.0 32 ............................ CCGCACGGGCTAAGCAGCTGGCCGAGAATTTC 244823 28 100.0 32 ............................ TGCGCGCGTGCAAAGACACCGTGTACAACCTG 244883 28 100.0 32 ............................ CAGCTAGCCACTACGCCCAGTACCATCACAGA 244943 28 100.0 32 ............................ ATGACGCTGGCGGCCATGGCCTGCATGCGGAT 245003 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 17 28 100.0 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : CCGTTGGCTCAGCGGCTTCGCCGACCACGCCATCGTCGGCGACATCCGCCCCGTCCCCGCCGGCGCAAGCGCGGTCAGCGTGCGCCGCCGCCAGGCCAAGAGCAGCCCCGCGCGCGCGCGCGACAGGCTGATGCGCCGCCAGGGCATCAGCGCGGAAGAAGCGCGCCGGCGGATACCGGACGAAGCGGCGCAGCGGCTGAACCTGCCCTACCTCACCGTAGACAGCGCCAGCACCGGCCAATGCTTCCGGCTGTTCGTCGAGCAACAGGCCGCGCCAAGCATCGCCGCGGGCAGCTTCAATGCCTACGGCCTCAGCGCCGCCGCCGCCCTGCCGGCTTGGTAGCCCGAAAGGGTCGCGGCCAGGACCACGACCCTTTTCTCTCCCGCCAACCTTCACCTTTTAAAATCAGAGACTTAACATCATGCCAGCAAAAAGGGTTTTGCCGGCAGAAATGGCTGACAGCCTTGCCGAACAAGGCTGATGGGCAATAAGATCCCTA # Right flank : AGTAGTACGCACGTCCGTCATTCCGGAGCATTACGCGCTGCGCCTGGGCACCTGGATCACCATGCACGAGGACCTGCGGCACAATCCCGCCTGCAAGGCGGTGTTCAGCGCGCTGGTGGAAGGCATGCGGCGGCATGCCGGGGATGTGTCCTCCGGCGGCTGTCCGCCATGAAAAAGCCGTCCCGGCATTGACCCGGAACGGCTTCTTCGCAGCCGGCCGCCCTTACTTGGGCGCTTTCGCCTGCGGCAGCCGCTGCAGCAACGCGAAGGTCATGTTCTGCTCGCGCGGGCGGTTGCCGGTCCACAGCACCTGCCAGCCTGGCTCGGCCACGCCCTCCTCGCTGCTGCGCACCACCAGCCAGTAATCGCACGGCGGCGTCTCCCCGGATGGGAAGGACAGCAGGTCGATGCCGGCGTAGTAGCGCCAGCTGATCATGGCCAGGCTGTTGCGGTTTTCCGTCGCGATGCAGGTGGCCGTGGCAGGCAGCTTGCGCAGCATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 50533-50015 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUKR01000015.1 Chromobacterium violaceum strain 16-419B 15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 50532 29 89.7 33 A.............T.............A GATGGGCTGGAAGAGCTTCGCCGCGGCGATCCT 50470 29 96.6 32 ..............T.............. CATGTAAAGGGTCATGTGACATCAACCCACTC 50409 29 96.6 32 ..............T.............. GCTGCGATCCGCTCCTCGGCAGTCGCGCTGTC 50348 29 100.0 32 ............................. CCGCTACTCAGTATCAAAGAGGTTCTAGAAGA 50287 29 100.0 32 ............................. TTGATCCATCTGCTGCCTGGCACTCGGTTTGT 50226 29 100.0 32 ............................. GCATGGGCCGAAAATACGCGCATATCGCAGCA 50165 29 100.0 32 ............................. ACACGTCCCAGCGGCCAACGTGTGCGCGCGAC 50104 29 93.1 32 ...........A..T.............. GTTCACAAGAAAAGCATCGAGGACGACAAGAC 50043 29 82.8 0 ....................A...TG.TC | ========== ====== ====== ====== ============================= ================================= ================== 9 29 95.4 32 GTGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : CCTGCTGGCGCAATGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAGGCCCGCCTGCCGCAGCTGCAATGCGCCGACCGCGCCTTCCGCCCCTTGCACGAGCAACTGGCCACCCAGGCGCTCACCGGCTTTGCCTGGTTGAACGCCGAGCATACGCTGCAGCAAACCCGCTTTGCCGACGGCAGCCGGCTTACCGCCAACTTCGGCCCCGCGCCGGTCCGCTACGATAAGCAAACCCTGCCGCCGCAAAGCCTGCTGGCCGAGCTGGCCGGCCAGCCGCCCAGGCTGCTGCCAGTGGCGGATTGCGTCGACAAGTAAGCGGCGGCGATAATGCTGATGTCGTTTTGCCGGTCATGGCGCGGCGGTTTGCCATGGCCGGCGAGCGGCATTGCCGAGCGATCGAGATGGTGATTTTTTGAGCGGAAAAATCGGTAGATTTTCAGGGTGGGTTTTTATCTTTAGAAATCAGTATCTTGAGATTGGT # Right flank : CTGCCCGTATATCGCTTGCTTAATCCGCGGCCGTCGCGCTGCCCGATGCGCTTGCGATCGACGCGCCGCGGCTTGCCGTCCGAGGAGGGCGCTTCCTATGCTGCAAGAATCGATGTCAGAGGAATCGCCATGCAGCAGTTAAGAGTGAGTGTTCTGGTTGCCGCGCTGTTTCTCGTCGTCGCCGTGGTGTCCAAGACGCTGGCCAGCTCCGTCACGGAGACCGTGCCGGTGTGGCTGGGCAGCGGGGTGACTTTTTCCGCGTTGCTGATTTCTCCGCGCTGGCGCTGGCCGGCCATTCTCGCCGGCGTGTGGCTGGCGTCGGCGATATGGGGGATGTCCGCGCATGGCCTGGGGCTGGCCGGCGCGGCGGCGTTTGCGGGGATAGAGGTGGTCAGCGGAGCCGTCGGCTGCTGGGTGGCCGGACTGGGGCGCAACGATCCGGATTCCCCGATCGGCATGGCCTTGCTGCTTTGCGGCGCGGCGCTGGCGTCCTGCCTGGG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : GTGTTCCCCACGCCTGTGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 59062-57810 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUKR01000015.1 Chromobacterium violaceum strain 16-419B 15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 59061 29 100.0 32 ............................. GGTTCAAGGCATGATTACTCTGATAACAGCTA 59000 29 100.0 32 ............................. ACGACATCGCGAAGCGTCAGCCGGTTCTGCCG 58939 29 100.0 32 ............................. CAAAGCCAAAACAAGATGGAACGTGGCTGCAG 58878 29 100.0 32 ............................. ACGCCGCTACCGCTGGCGGTGCCGGCCAGGGT 58817 29 100.0 32 ............................. TTTAACAAACCATCTGAGCTCTGGCCTGGCAA 58756 29 100.0 32 ............................. CCGCTGACCGGCATGTCCGGGTTCGACACGAT 58695 29 100.0 32 ............................. GGATAAATTGACAAATCTGCGGACGGCCCTGG 58634 29 96.6 32 ............................A CGTCCATCGCCATGAATGTCCCGACCTCAACC 58573 29 100.0 32 ............................. TCCGCATGTGCCAAGGCGGGTAGCAGAGCCAA 58512 29 100.0 32 ............................. CCGCGTGCCAATCACTTCATTGCGCTTCAGTT 58451 29 100.0 32 ............................. CCGGCGTCCGCCATAAACAGCTTGCCGGTGGC 58390 29 100.0 32 ............................. TTTGCAACGATACTGCGGAGCGTTTTGTGAAA 58329 29 100.0 32 ............................. GCCTACCAGCTGGCATGCCGGATGATGGAAGA 58268 29 100.0 32 ............................. CCGCCCAATATAACGAGGACCAGCGGTCGCGC 58207 29 100.0 32 ............................. CTCACGTCGGGCTGGTAAAAATAGAGCATGAT 58146 29 100.0 32 ............................. GCCAAATCCGTGTTTGCACCCGGCCTGCCATA 58085 29 100.0 32 ............................. TGTAAGGTGATTTTCGGAGTTCCGCGGGCGTA 58024 29 100.0 32 ............................. GTGCTGTGCAGTGCCATATTCGCGGCGGCTGT 57963 29 100.0 32 ............................. CCGGCGGCCTCGGCTGACAGGGTGAACAGGTC 57902 29 86.2 35 .........................GGAA CCAAAGCCAGTGCCTCAAGGCTTGAGGGTTCGAGA 57838 29 69.0 0 A.A.........GTT..........TTGA | ========== ====== ====== ====== ============================= =================================== ================== 21 29 97.7 32 GTGTTCCCCACGCACGTGGGGATGAACCG # Left flank : TGCCCACGCCGGGCGGGCCCCACAATATCATCGAGTGCGGCTTGCCGGACGCCACCGCCAGGCTCAGCGGCTTGCCCGGGCCGATCAGGTGCTGCTGGCCGATCACCTGGTCGAGCGCTTGCGGGCGCAAGGCCTCGGCCAGCGGTTTTTGCGGTTCGACGGAAAAAAGATCGGACATGGCGCGGTTTTGGCGGGATGGGGCGGAGAAACAGTATACCAGTTGGGGACACGCATGAAAAAAGCGGCAGTCAGGCGCTTTTTGCTTGCATGTCGATGGAATGAAGGTAGGCTATGGCTGCTGGCCTAGCCTAAGCCTTGCTGTTGCGGAAGCTTGGCGTTCAGCATCAGGGGCGAGCGGTGTCGAACCCTTGTGCAAGGGACGATTGGCCAAGGCCTGGCGGGGTTTGCCGTGCTGATTTGAACGCCGCTTCATGACTGGGAAAATCGGTAGAATTTTAGATCGGATTTTTGTCTTTAAAAATCAGCAGCTTGAGAATGGT # Right flank : CGGGGGACGGCTGGAGTGGTGTCGCGGCGCTGCCAGTCCGGCCGCGTCCGGCAAAAAAAAAAGCGCCCCGTGGGGCGCTTTTTTTTTGCACAACGAGTAAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGAACTTCGAAGGTGGTGCCTACCAGGCGGGCCGGCTTCAGCACTTTGCCCGAGGTGTCGCCGCGCACGGCCGGCTCGGTGTATTCCACTTCGCGGATCACGGTGGTCGGCAGTTCCACGGAGATGGCCTTGCCGTCGTAGAAGGTTACCTGGCACACGTCTTCCATGCCGTCGACGATGTAGTTGATGGTGTCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAATTCGGTGTCCATGAACACGTACATCGGGTCGGCGAAGTAGGAGTAGGTGCAGTCCTTGCGATCCAGCACCACCACGTCGAACTTGTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //