Array 1 435502-438401 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPLZ01000001.1 Salmonella enterica subsp. enterica serovar Ekotedo strain CFSAN059890 CFSAN059890_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 435502 29 100.0 32 ............................. TTTGGCAGTTTAACGGCGTTGATTACACCGCA 435563 29 100.0 33 ............................. GACGCGTCAGGCACCGCAGACGAAAGAGACCAA 435625 29 100.0 32 ............................. ACTCATTAACTCCCAGTTCATGCCGTGATCAC 435686 29 100.0 32 ............................. GCGGTTTCTCCGTACGAATCATCAGTAATTCC 435747 29 100.0 32 ............................. TTTGATTGTGCGGATTGACCAAAAGCCGCACC 435808 29 100.0 32 ............................. CTAACGATCAAAAATACGAGGTTTGGCACGAC 435869 29 100.0 32 ............................. TTGCAGCTGCAATTGGAAAACACTGGCTCGAT 435930 29 100.0 32 ............................. CCCTGTGCGGTGTACATGCGGTACGACGTAAA 435991 29 100.0 32 ............................. AGTCGGCTTGGACGTTGACGGCACACCCTTCC 436052 29 100.0 32 ............................. GACTGGAGAATAACAATCCCCCCGACACACAG 436113 29 100.0 32 ............................. ACAATACACTGAAACTGGCCAGCGACATGGAA 436174 29 100.0 32 ............................. AGTTTACTCCAGATATGACAATGCGCCGCTGG 436235 29 100.0 32 ............................. TCGTATCCCTGCAGCTCCAGCGACCCTTCCCT 436296 29 100.0 32 ............................. GGCGCGGGAAATGGGTTTTAAATATTATCGCT 436357 29 100.0 32 ............................. TCAGACTCCGGTCAGAATTGCATAGTCGTCAG 436418 29 100.0 32 ............................. CCAGCATCAGGCAATCAACCATCACCAGAAAA 436479 29 100.0 32 ............................. ACGACATCGCGCAGGCTATCTGGACGGCGGCA 436540 29 100.0 32 ............................. AGGCCTGATTATTCACTGCCTGCCAGTGTTTT 436601 29 100.0 34 ............................. GGGTGTTTTGGAAAAGTTCGGGCCAAATCTCGGG 436664 29 100.0 32 ............................. TCCATTGCCCGCGAGATGCCGGTTACGCAGGA 436725 29 100.0 32 ............................. ATGGCTGGTTCGCTTGCTGCATCCGGTATGCA 436786 29 100.0 32 ............................. CGTGTTCTCGGCGAGTGGTTTTTTACGTCCAA 436847 29 100.0 32 ............................. TTAACAACTGCCGCGCAGATGATCGGGAAATT 436908 29 100.0 32 ............................. CCACCACCGCCGACCTTAATTTCGAAGTTGCG 436969 29 100.0 33 ............................. CGTGATTACGGCAAGGTATCACCACAATTCTGG 437031 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 437092 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 437153 29 100.0 32 ............................. GGATCTGTATCCCCTGCAATAGCGGTCACATG 437214 29 100.0 32 ............................. GCTAGGGTTAAACAGGTAACAATATGGGGCGA 437275 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 437336 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 437397 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 437458 29 96.6 32 ............T................ ATTATATAAAAGGCGGCGGCAATGACGGAGGT 437519 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 437580 29 100.0 32 ............................. ACACCAGCTACCGGCGACGCCTGCAGGCTGCA 437641 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 437702 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 437763 29 96.6 32 ..A.......................... CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 437824 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 437885 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 437947 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 438008 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 438069 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 438130 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 438191 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 438252 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 438313 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 438374 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================== ================== 48 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTGGC # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGTAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGATCCCCTGCCGATTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 454524-457076 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPLZ01000001.1 Salmonella enterica subsp. enterica serovar Ekotedo strain CFSAN059890 CFSAN059890_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 454524 29 100.0 32 ............................. GAGTCACCGCAAATACCAGTGGATACGACAGC 454585 29 100.0 32 ............................. GCGGCGATCGCGAAAATGGGGGCGCAGGTGGG 454646 29 100.0 33 ............................. GGAATTTATCAACTCCCCAAGCTCATCCCACGA 454708 29 100.0 32 ............................. TCTGCAATCACGCCAGTAATGCAGACAATAGC 454769 29 100.0 32 ............................. CCTGGTCTGGTAGTTGCGTTGGGTCGCCGTCG 454830 29 100.0 32 ............................. CGCAGGCTGTTTGACGGCGGACACGTACACGG 454891 29 100.0 32 ............................. CCGAAATACGATGCCGGAATATCGTAAACGGA 454952 29 100.0 32 ............................. TATTCAGGGTTACCACATCGCGGCAGAACCTG 455013 29 100.0 32 ............................. CCGAACGGGTGCTGGCGGCGATTGAGGCAGTG 455074 29 100.0 32 ............................. GAGGTGGCTGCATTAATTAACTCCCGCGCCGG 455135 29 100.0 32 ............................. CAGTGGCAGACGGGCGACACCGCGCCAGATTA 455196 29 100.0 32 ............................. GAGTGGGTAACGGAATCCCCAGAAAACCGGGA 455257 29 100.0 32 ............................. CACAGAACAGACTCAGCGTCAGGCGTGTTCGC 455318 29 100.0 32 ............................. CCGTTTGAGGGCTATTGCACTGGGAATAACGT 455379 29 100.0 32 ............................. AGCAACATCGACAAACAGGCGCTGCTGGGTGC 455440 29 100.0 32 ............................. CGCCGTCGTGCGTGAAAATCGGGTTAATGGGG 455501 29 100.0 32 ............................. AAGCAGATACCGTAGAGAACCAGAATCAGGCT 455562 29 100.0 32 ............................. TTGTTACTTCTTCTCTGGCTGTTGCTAGTTAT 455623 29 100.0 32 ............................. CCCCTATTCCTGATCATCGCGCATTTGGCGGC 455684 29 100.0 32 ............................. TATACACGGCACTATTTGGAAATCAGGCGGGA 455745 29 100.0 32 ............................. GGTCTGCTGAAACGGTTACCCCGTTATCGGTA 455806 29 100.0 32 ............................. TATACTCGTTGCCGATCAACGCATATTGATCA 455867 29 100.0 32 ............................. ATGCGGAACTATATCAGGAAAATCTTAAAACA 455928 29 100.0 32 ............................. ACTTACGTCAGCGCGCCGATTTGGTGCCGGAG 455989 29 100.0 32 ............................. ATCTCATAGCGACGATTTATACCTATTTAGCT 456050 29 100.0 32 ............................. TGCGGCCAGCATCGCCATTTCTGACAACAGCA 456111 29 100.0 32 ............................. GCGGAGAGGGTGGGGATAATGGAGCAACTGAT 456172 29 100.0 32 ............................. TCACGGAAACGATCGCCTCATCATTAAAGTTA 456233 29 100.0 33 ............................. ATTCGTTAATTAAATATGACGGCAATCAGCAAC 456295 29 100.0 32 ............................. GCTGGCCGCTGTTTCTTGTCTCCCCGTCCTGG 456356 29 100.0 1 ............................. C Deletion [456386] 456373 29 72.4 23 .G.GATAAAC................... ATTCGTTAATTAAATATGACGGC Deletion [456425] 456435 29 100.0 32 ............................. GCTGGCCGCTGTTTCTTGTCTCCCCGTCCTGG 456496 29 100.0 32 ............................. CCAGCGGCGATAATTGCTCTTTCAATATCGCG 456557 29 100.0 33 ............................. GACATTTCATCCGGGGTTATTTGCCATTCACGG 456619 29 100.0 32 ............................. CCGGGGACGTATCGCGGAATATCTCAGATTGA 456680 29 100.0 32 ............................. CTATATCTTCTATCGCGTCCGACGCCGGGTGT 456741 29 96.6 32 ............T................ TATCCACATCGACAACAATCACCGCACAGTGA 456802 29 100.0 33 ............................. AGCGAGGACGAGTTTAACGCGCGGTTCCCCAGC 456864 29 100.0 32 ............................. GCGCGCAACCCGGCATTTCACAGAAAATTTTT 456925 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 456986 29 100.0 32 ............................. CCGCTTTGCTGGCAACATTCACCACATAGCAT 457047 29 96.6 0 ............T................ | A [457074] ========== ====== ====== ====== ============================= ================================= ================== 43 29 99.2 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCATTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //