Array 1 97757-96596 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQWF010000001.1 Streptococcus thermophilus strain CF2_14 NODE_1_length_194267_cov_50.130914, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 97756 36 100.0 30 .................................... AGTAATATCAAAAAAGCCCCCTTGATTATC 97690 36 100.0 30 .................................... TTGTGTTCGTTTAGGTGTGTACCATAGAAA 97624 36 100.0 30 .................................... AACGGCCTATGCTTAATAAAACAACTTAAA 97558 36 100.0 30 .................................... GAATGGCTTGTCTATTTTTGGGCTTTTGTG 97492 36 100.0 30 .................................... CGTTAGCAGTTTCAATCCGTAGCCACACCT 97426 36 100.0 30 .................................... CTCAATCTAATAAATGGATTCGGAAAGACC 97360 36 100.0 31 .................................... CTAGAGGTGACCAAGGTGTACCTGGACCTAA 97293 36 100.0 30 .................................... CTTCTTAAAATTGAATAATTCGAAGTACAT 97227 36 100.0 30 .................................... TTCTAAGTCAAAAGAATATGATGCTAGTGG 97161 36 100.0 30 .................................... GGTGGCGCTACACATACACTACGCTACGCT 97095 36 100.0 30 .................................... TTTTGCTAGGATATGTCCGAACGTCGATAC 97029 36 100.0 30 .................................... TAAAACGCCCGTAGCACGATTTTATTGCAT 96963 36 100.0 30 .................................... AAGCTAAGTAAGCTATATTTTGACCGTTAT 96897 36 100.0 31 .................................... CTTAGCCTTGAAATGGCACGTAGTGAACTTA 96830 36 100.0 31 .................................... CGGACAGCGATAAATACACTCTATACAGAGA 96763 36 100.0 30 .................................... TAAATAATAAAGTTTTCTACCAAGATAATT 96697 36 100.0 30 .................................... CACACTTGCACAAGTATGTTTCAATCTTAT 96631 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 18 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAATCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 5980-6147 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQWF010000045.1 Streptococcus thermophilus strain CF2_14 NODE_45_length_6166_cov_29.963999, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5980 36 100.0 30 .................................... TGGGATGGTAGAGAGCGTGTAAGTCGCATC 6046 36 100.0 30 .................................... AACGTTGATGAGTATTATTGAAAAATTATA 6112 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : ATTAGCACGAGCCTCTGTA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 18-2492 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQWF010000013.1 Streptococcus thermophilus strain CF2_14 NODE_13_length_46181_cov_43.451416, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18 36 100.0 30 .................................... ACCTGTCATCTCTGGGAGTTAAATTTCCTT 84 36 100.0 30 .................................... ATTAGCACGAGCCTCTGTATACTGTTCTTT 150 36 100.0 30 .................................... TTTGGTCTGGTGCGCCTTTTATATTGAATT 216 36 100.0 29 .................................... GGTTCCCTATGAGCAAAGGACAACGCTTT 281 36 100.0 30 .................................... TGGCTTCTAGCGAGCCTGCTTGTTGCCAAG 347 36 100.0 30 .................................... TGCGTTGCGTAACATGCCCGAAAAATTCAC 413 36 100.0 30 .................................... TAGGAAATTCATACCCTGCAGATATATCAT 479 36 100.0 30 .................................... AACGATAAAAAAGAAGAAGCTTTCACGCCT 545 36 100.0 30 .................................... TCGATTTTAAGCCGTGTATTTTGCTAGGTA 611 36 100.0 30 .................................... GCTTGGAGGCGTCAATGTTCGCAGCTTATC 677 36 100.0 30 .................................... ACATTGAGTAAGTCAATAGTTTGCGATGGC 743 36 100.0 30 .................................... TAGAATAAGTGAATGGGAAACTGACGGAAC 809 36 100.0 30 .................................... ACATAGAAGGCTAAGCAATCAAGCAAAAGA 875 36 100.0 30 .................................... ACGACATCAAGCTGATTATCTTCTACATAC 941 36 100.0 30 .................................... CTGTCTAACATAGTCCCAAACTTTATCATA 1007 36 100.0 30 .................................... CTAAAAACGGTGTTCTATATCGAGGTCAAC 1073 36 100.0 30 .................................... TGTTTCCATCCGTGGTGAAATGGTAGAAGT 1139 36 100.0 30 .................................... CAAAGAGCTGAACCGCCTGAATAGTTTAGC 1205 36 100.0 29 .................................... GCAATCACAGTCAGAACTTGATAGTATTG 1270 36 100.0 30 .................................... TTGTTAACGATGGATCAGTTGAAGCTTATC 1336 36 100.0 30 .................................... TTGAGCATTTACTTACTAATTTCAAACGGT 1402 36 100.0 30 .................................... AGATGACCTATAATATAATCAAAATCACCT 1468 36 100.0 30 .................................... TCTATCTTAGGCGGTGGACTGATGACGTTA 1534 36 100.0 30 .................................... GATAGATATATATATTATATCACAATCCTA 1600 36 100.0 30 .................................... TTATAGTATATCTAATGTGTTCCCGTTTGT 1666 36 100.0 30 .................................... TTGAAATTTATAATATGGATGTCGATGATG 1732 36 100.0 30 .................................... TCTAGAGACCTCTTCGTGTTGTCACAACCT 1798 36 100.0 29 .................................... GCTCTTTCCTACTCCTGTGTCTCCTATTA 1863 36 100.0 30 .................................... GTTTATCACTTATTTGATATACACTTATAA 1929 36 100.0 30 .................................... ATATCGGTGGTGGTGCGTTTGAAACTGACA 1995 36 100.0 30 .................................... GACCCACGGATACCGCCAAAACAGCACGTG 2061 36 100.0 30 .................................... GAAGTGATAGACGTTGTTAACTCATCAGCA 2127 36 100.0 30 .................................... TTTCTGTGTACTCCATCGGCTTTTGAGTGT 2193 36 100.0 30 .................................... GCTTTGCGAGTAACGCCGGTTGCTTTTCCT 2259 36 100.0 30 .................................... TTGGCATCAGTGAATTTGATGCCTGGAAGT 2325 36 100.0 30 .................................... AATTTTGCCCCTTCTTTGCCCCTTGACTAG 2391 36 100.0 30 .................................... ACCATTAGCAATCATTTGTGCCCATTGAGT 2457 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 38 36 99.9 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : AATGTTCGCAGCTTATCG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCATGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //