Array 1 43978-45409 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYLZ01000015.1 Escherichia coli strain N010.L-7 NODE_15_length_125179_cov_37.3149, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43978 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 44039 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 44100 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 44161 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 44222 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 44283 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 44344 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 44405 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 44466 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 44527 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 44588 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 44649 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 44710 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 44771 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 44832 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 44893 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 44954 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 45015 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 45076 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 45137 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 45198 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 45259 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 45320 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 45381 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 60911-61548 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYLZ01000015.1 Escherichia coli strain N010.L-7 NODE_15_length_125179_cov_37.3149, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 60911 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 60972 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 61033 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 61094 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 61155 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 61216 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 61276 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 61337 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 61398 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 61459 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 61520 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //