Array 1 5584-378 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNJP01000064.1 Xanthomonas oryzae pv. oryzae strain GX3 scaffold63, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 5583 31 100.0 34 ............................... GCGTTGGCCGTAGTCCTCCCGTCAATTGTGGTAA 5518 31 100.0 36 ............................... TCGTCTCCGTCTAAGTCAATCCAACTTGTTGGTGCT 5451 31 100.0 35 ............................... TTGATGAAGCCGGCCGGGTGGCCGTCCAGGTGGCC 5385 31 100.0 36 ............................... TGTAATCCTCATTAGTTGGTTGGGTGTGTTGCTGGG 5318 31 100.0 34 ............................... GCCTTAAAGGGGGAGATACATATGTCAATGCTGC 5253 31 100.0 36 ............................... CCGCCAGAGCGCCTTGCCTGCGAACTTTCCGTGGTC 5186 31 100.0 34 ............................... TTGCGATCAACACAGATCTGTGCTCTCCATTTCT 5121 31 100.0 34 ............................... GGCGCCAGCAGCATCAGAATTTATTTGAGGTTGT 5056 31 100.0 36 ............................... AAGCCGTTGCTGTGTCCTCTTCGCCACGATGGCGTA 4989 31 100.0 34 ............................... TGGACATCAAATGGTGAGGCCTTGCGTTTGTGCA 4924 31 100.0 35 ............................... ACCAACAGCACCCACGGCGTCTCCTACAACAATGC 4858 31 100.0 33 ............................... ATTGTCTAGTCTCTCTGTCTCAGTAGTTGGGTA 4794 31 100.0 33 ............................... TCTTGCTCTACACTCAGTAAGTATCTCTCATAT 4730 31 100.0 34 ............................... TGGATACTCTGCAATCTTCAGGAAATCCGTTGGT 4665 31 100.0 33 ............................... GTTGCCGTGCTGCTAAAGGTTAGCTGCACACCG 4601 31 100.0 34 ............................... ACGGTGCGGGCATTGATCCAGGGACAGGCCAATA 4536 31 100.0 33 ............................... AAGGACAGCAAGACGGCCAAGGCGGGTGCATGT 4472 31 100.0 33 ............................... AGTGTCTGCGAGCGTGCTTGCCAATAGGCTAGC 4408 31 100.0 34 ............................... TATACCAACCCCAAAAATGACACTGGTATGGGTG 4343 31 100.0 33 ............................... TCAGGGTGCAGGAGTTTATCTACAAATACCGTA 4279 31 100.0 36 ............................... CTGCCCGAACACTTTGTCGAACCGCCCACTGAGGTG 4212 31 100.0 33 ............................... GGTTTTGAGCGTGAACACGAAAGGTACTGGGGA 4148 31 100.0 36 ............................... TGCAAGTCCGAGCCCTGTGGGTTGATCCCTGAGCCC 4081 31 100.0 34 ............................... GTGCTTATCCTCCGTGGCTCTTCCATAATCACAC 4016 31 100.0 35 ............................... GTGCAGTCACTTGTTGAGAGTGGCAAGCAGACTGA 3950 31 100.0 34 ............................... AATGCCTGCCTCTGCACAGCTGTTGACCGTGGCG 3885 31 100.0 33 ............................... CTAAAAACAAGCTCAGGCTAGAGGGACGGCGGA 3821 31 100.0 35 ............................... AACTGGGCAAGTCCTAAGCAGAGGTCAGCGCTGTT 3755 31 100.0 34 ............................... CACCGTAACACACCCGTCAGGGGATCATAAGCCA 3690 31 100.0 34 ............................... TGGGTGCAGCATTTTTAGGGGATGTTGAGCACAA 3625 31 100.0 36 ............................... TTGGTTGGCGCCTTTGACCTGGCTGCGCAGATCTTT 3558 31 100.0 37 ............................... TCTGCTGCTTTCGGCGTGGATTACAACAGCCTCAGCG 3490 31 100.0 34 ............................... GCGGGCAAGGCGCTGTGGCGGGAATGTCAGAAGG 3425 31 100.0 34 ............................... ACCTTGCAGCCCTTAGCTTTGCAATACCCCTCAT 3360 31 100.0 35 ............................... AGCACTGTGCTTGGCGGTATCGGCGGCGGTGCAGG 3294 31 100.0 34 ............................... GGTGGCAGAGTATATGCAGATATCCCACCCGATT 3229 31 100.0 36 ............................... TTCGGCGTCCCGCCGAGCATGATTGGGCACAGCAGT 3162 31 100.0 36 ............................... TGTTGGTGACGCGCCACCTTCCACGCCCGGTGATGG 3095 31 100.0 34 ............................... GTGCATTACTTCACCAAAGATCGCGCCGACCCCA 3030 31 100.0 34 ............................... ACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 2965 31 100.0 34 ............................... TGACTATGACTCTGTCGCCCTGGCTGCGCCGTAT 2900 31 100.0 34 ............................... CGCCGACTCTAGGGCAATGCGCGTTGCTGGAGGG 2835 31 100.0 35 ............................... AAGCTTGATCTTGTTGGCATAGGACCAGCGCGGAA 2769 31 100.0 34 ............................... TGCTGTTAGGTCCGCAGTTACTGTATACACCTGC 2704 31 100.0 33 ............................... GTCACATTGGTTGATCCATCAGCTCCAGATCCT 2640 31 100.0 34 ............................... CCACGGACAGTGCCGAGCGCAAGGGTATCCCACT 2575 31 100.0 34 ............................... GTCTGGAATACACCACTTACCCGACTCATCCTGC 2510 31 100.0 35 ............................... CTTAATCCCGGAGATGTATACGCCACTTCGCCGGC 2444 31 100.0 35 ............................... CACGCCCGGTGATGGTGATGGCCACGGTGATGACC 2378 31 100.0 36 ............................... GCCTTGCTCATGCCGTTGGCGCTGTAGTCCCCGTAG 2311 31 100.0 34 ............................... ACATCGTTCGACAGGGTGATGGCGTTCGGTTGCA 2246 31 100.0 35 ............................... CGCGCCAAGGGGGCACCTGCCCGCTCCAACTCCTC 2180 31 100.0 35 ............................... TTCGTGCAGCTGGTTGGGTGATCTTCGCCATTGCC 2114 31 100.0 35 ............................... TCACGAATAGGCGCGGTCCAGGGCCACGCAGTGGC 2048 31 100.0 34 ............................... GCCAACGCGAAACCTCTGAAACGTTGCATTGCTG 1983 31 100.0 34 ............................... TCAGCGCGTGTGGAGCGTTATCCGTAGGGGCGCT 1918 31 100.0 36 ............................... CCGACGTTGGCCAGCCTCTACGAAGGCGCTGTAGCC 1851 31 100.0 35 ............................... TAGTTGTGACGATGGATGCTTCTACAATTTCACCA 1785 31 100.0 34 ............................... AGGTGTTGCGCGCTGTCAAAGCGTCTGCACGCGT 1720 31 100.0 36 ............................... ACCAAAGATCGCGCCGACCCCAATAAGCCGGTGGCC 1653 31 100.0 35 ............................... AAGATTGGACCCTCGCTGGTGATGATCGGCGCGGC 1587 31 100.0 35 ............................... ATTTCATGAGCGCGCATGCGCAGATCAGCAAGCAA 1521 31 100.0 36 ............................... GTGATGGTGCTGGAACAGGCGTTGTCGGCTGTGCTG 1454 31 100.0 35 ............................... TAGATCGCCCACAAAGGACCGTGGATATGTGGACA 1388 31 100.0 34 ............................... TTTCGCGGCGTGATCACCTGGTCGGCGATTAACG 1323 31 100.0 33 ............................... TATACGGAGCGTGGAGGGTGATCTTAAGGTTGC 1259 31 100.0 34 ............................... ACCATCTGCGTTTCTGCATCGCTGAAAAGGCCGC 1194 31 100.0 34 ............................... ATCGTGCGGCATTGCCCAACGCCTGATGCGTTGC 1129 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 1063 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 997 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 932 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 867 31 100.0 35 ............................... ACGTTCAAGCCGCTCGCCCTGGGCGACCGGTGGGA 801 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 735 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 670 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 605 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 538 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 473 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCGGCGCAGGCTGGCC 408 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 80 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //