Array 1 28115-28935 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKXX01000063.1 Klebsiella variicola strain AS012291 AS012291_63, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 28115 28 100.0 33 ............................ CATTTGCTTCCGGACTGGCTGGCATTGCACTCC 28176 28 100.0 33 ............................ CGCTGGAAGTAACCGCGCCGCCGGTGCCCGATG 28237 28 100.0 33 ............................ TTATGTTAGTAGGTACCACAATCACAGCGGACA 28298 28 100.0 33 ............................ TGTTGAACAGGCCAGTCGGGGTATCGTCGGTGG 28359 28 100.0 33 ............................ CCAGTATGGGGCGACCTGATTTTTCAGCCTGGT 28420 28 100.0 33 ............................ CTGGTAGCAGACAGGTTCGAACCCGCCTGGTAC 28481 28 100.0 33 ............................ CTGATAATGTCACCCTGGCTGTCACGCAGACAA 28542 28 100.0 33 ............................ TGCAATATATGGTGTGCTGACGGGCTGTAAAAA 28603 28 100.0 33 ............................ CATCAGGGAATATTGTGGGGTCGTAGTTTCTTC 28664 28 100.0 33 ............................ CAAACAGCTTACGGAGTGGTTCGAGGTCGGTTA 28725 28 100.0 33 ............................ TACCTCGAATCGTTCTACCAGTACGACGACGCC 28786 28 100.0 33 ............................ TGACCAGCGATGGAGTATCTCGATCCAGTTTGT 28847 28 96.4 33 ..............A............. TCAGTGGACCGGCCAGGCGTATATCAATCTGGG 28908 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.2 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TCAGCGTTGGCCAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTCGACGGCGCAGCGCAGGATAATAGCCTCCAGCTCCCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGGTTTTTCCGCAGCGGTAACTACGTGAAGCCACGGAAGGCAAGCATCAGTACGTCGCGCTACGTTCTGGGTATGACAAAAGCGTTTTGCGCCTGGCTGCGGGGCGGGCAGGCCAGTAGGGTATAGCGGTCCAGGTCAGCAGCAAGTCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATAAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAACTATCGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGGAAGGGGATTCCTGACGTAAAGGCATCAATGCCGTGACATAGTTATCCTTAATGTAGATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATATTTTTTATATGATTTTACTTATAAATATTCGTGAACTATGTTTGTTCTATACTTTCTTTAGGGACATCTAAAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8404-9528 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKXX01000076.1 Klebsiella variicola strain AS012291 AS012291_76, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8404 28 100.0 33 ............................ CACAGTGCCGTATCGATGGCAGCGAAGAGGACG 8465 28 100.0 33 ............................ TACAGCGTTTGTCGATCTTGGAATCGTTGAGAC 8526 28 100.0 33 ............................ CAGTGACGGTGACGACTCAGCGGAGAAAGAAGC 8587 28 100.0 33 ............................ CCCTTGCATTCGAAGCGGCCCGGCTACAGTAGC 8648 28 100.0 33 ............................ CAACCGCCTCAGCGGCTGAGGATTGGTCTTGGC 8709 28 100.0 33 ............................ TTAAGGCGCAGGCCATTGCTATTGCTCATGAGG 8770 28 100.0 33 ............................ TCTCGGACATTACTCGCGAGCTACAGCGCGTCG 8831 28 100.0 33 ............................ TAAGTTCGCCGGTCTGCCACCTGCTGAACGGTT 8892 28 100.0 33 ............................ TCTTTGCTGGAACTATGATGGCTCTATATGGGC 8953 28 100.0 33 ............................ TGGCAGAAGTACCGTTACCAACTCCCACAGATA 9014 28 100.0 33 ............................ TTTATTGATATTGCAGGCTTCCTGCCCGTTTTC 9075 28 100.0 33 ............................ TCCAGCAGCACGTTGCGCCGGATTCGGTTATCT 9136 28 92.9 33 ......................G.G... CTCAATTTTGGTTTTGTCATCATCCAGCGCTCG 9197 28 96.4 33 ..............T............. CATTTACGGCCAGTGCCGCGTCTTTCCTGACCT 9258 28 96.4 33 ..............T............. CATCGATACGGGCGGCTATACCTCATCCACAGG 9319 28 96.4 33 ..............T............. CTGGATGCTCTGCTCTCGATAGTAGCGGACGCG 9380 28 96.4 33 ..............T............. CGGGGCTCACCTGCGTAGTTGTTGGCCGTCAGC 9441 27 89.3 33 .........G....T..-.......... CATGATTACCTCGTATCAGAGCGGCCGCTATCT 9501 28 75.0 0 ..............T......T.TAGCA | ========== ====== ====== ====== ============================ ================================= ================== 19 28 97.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCCCGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGATGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGGGAGGTCAGAAAGCCGATTATTGAGCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATAGTGGTTAAATTCTCGCTCTTTCACAATATGTTGGT # Right flank : ACTAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACAGAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCTGGCTTGTTGGTGTGGATATCTCCAGGTGTTGGAGCAGTGACAGAAATCCATTTTATATCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACGCATGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1279-2459 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKXX01000132.1 Klebsiella variicola strain AS012291 AS012291_132, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1279 29 100.0 32 ............................. ATCAGCCTGCGGGGTTCGGAGCTGCGTGTCTC 1340 29 100.0 32 ............................. GAAACTATTTCGGAGCATCTCATTGCTGAGGG 1401 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 1462 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 1523 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAAAACCACCGAGGCAGGG 1584 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 1645 29 93.1 25 ............CA............... AACATCAGTGGAAATCCACTGCGGC Deletion [1699] 1699 29 89.7 32 ......T.....CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 1760 29 100.0 32 ............................. CCGAGATTGATTAAAGCAAAGTAACGGCGGTG 1821 29 93.1 32 ............CA............... CAGGTTATACTGGCAAAACGTCGATGGCTCTC 1882 28 89.7 32 .....-......CT............... TAAATCAGCAAATATTGTTGTCTACCGTGTCG 1942 29 96.6 32 .............C............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 2003 29 100.0 32 ............................. TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 2064 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [2069] 2126 29 86.2 32 ............CT.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT CC [2131] 2189 29 93.1 32 ............CA............... CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 2250 29 93.1 31 ............C..A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 2310 29 86.2 32 ...C........CA............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 2371 29 93.1 32 ............CT............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 2432 28 79.3 0 ........T.A.CA........-.....A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 93.5 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGAAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //