Array 1 24917-24586 **** Predicted by CRISPRDetect 2.4 *** >NZ_UNYS01000015.1 Klebsiella quasivariicola strain 2485STDY5438283, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 24916 28 100.0 33 ............................ TGGGTTTTCGTTCGAGTTTAGCGCCTGCAGGCG 24855 28 100.0 33 ............................ TCGAATGGGAAAACCTGTTCGCTTTTTTATCAG 24794 28 100.0 33 ............................ TGGGATTCAGCCTGGGTTCTCTCTTGATGTGAG 24733 28 96.4 33 ..........T................. TCATGTAACTTTCAGTGCGCACCTTCTTTCATG 24672 27 92.9 33 .............A.......-...... TCTCGTGATGGTCTATGACGTCGCCGTCGGTGG 24612 27 82.1 0 ............C.T......C-.A... | ========== ====== ====== ====== ============================ ================================= ================== 6 28 95.2 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : GTCAGCGTCGGCCAACCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTGGACGGCGCAGCGCAGGATAACAGTCTCCAGCTCCCGCTGCTGACCAGCATGTATCTTGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGTGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTGCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCCGGGAATGACAAAAGTGTTTTGCGCCTGGCTGCGGCCCGGGGAGGCGAGTAGGGTAGACCGGTCCTGGTCAGCAGCAAGTCAACGGTGGTGAGATGGGGACTTACTTTTTCGTTTGATGAATGTGATGCTGATGCGGAACCCCTGCGGAGTGCAATTATCGTAAATCTGGTGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : AACAAAGCTGGTCAACCGTTGTTATCGTTATCTTGGTTTAGTTTGGCAAACACAGTTTAATATATTTTTCATGTGAATTTAAAATTCATATTCATGTGTTATATTTATTTTTTATTTCGCAATGGTTGTTAAGTCCATTTTTCTGGCGCACCTGAAGTATGATTATTCATACTACTTATTTATAATGTCTGATATTGTCGATTTGATGTCTCACATTAAGCGCAGCGTTTGTGAGTGCTTTTTATTTTATAAAAAATTATTTATAAAGCTTCCTGACTTTAGTATTAATAAAACGCACATGTTTTATTAAGGATGATTTTCATGAGGCGCTTAACCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGCCCGGCGAAAACCCGGATGTTGAGTGATGGTCGCGTGGTGCAGGGACGCTCGGTATTGAGTCATTGTCAGATTGTCGGGGAGATTGCCCGGGCGCTTATAGCGCTGTATCC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25609-28383 **** Predicted by CRISPRDetect 2.4 *** >NZ_UNYS01000019.1 Klebsiella quasivariicola strain 2485STDY5438283, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 25609 29 100.0 32 ............................. CCCCCAGGGTGTCGCATCGTTTGCACTTGTAG 25670 29 100.0 32 ............................. TATCTGGCGACCTGCCGCACCGAAGAGGGGCG 25731 29 100.0 32 ............................. GTGGTGCATCCAGAACGGTAGCCAATTCTGTG 25792 29 100.0 32 ............................. GATGTTGGTCACGGTGTTAGCCCTCTTTACGT 25853 29 100.0 32 ............................. TGGGAAACGTTTCAGGAATCGTTGTAAACCAC 25914 29 100.0 32 ............................. ATGTACGTTACTATCAGGATGACGTTTAAAAT 25975 29 100.0 32 ............................. CATTATGAATCGCTCAATACTTTCTTCACTAT 26036 29 100.0 32 ............................. AATTATTTTAAACTTCTTGCGTAATTCGTACA 26097 29 100.0 32 ............................. TTCTATGTGTTGAATTGCTTGTTTACCTGTTT 26158 29 100.0 32 ............................. AGCCGGGAATAATTCATTACTGATCGCCAGGT 26219 29 100.0 32 ............................. CCATTTTTCGTATGATTTAGTTCTCAATGTTT 26280 29 100.0 32 ............................. TCAGAATTGATTAAAACAGATGGTGTTAAAGT 26341 29 100.0 32 ............................. TTGTCAACTTCACGCCAGTAGTCTTTAGAGAT 26402 29 100.0 32 ............................. CAAATATTGCTGTGCATCGCGGGAGACAAAAC 26463 29 100.0 32 ............................. CAGCATTGCTCAAACAGCAGGCAGAGTATAAA 26524 29 100.0 32 ............................. GTTGCGGTCTGCTGGCGTCGATACCGGGTGAG 26585 29 100.0 32 ............................. AGTTTTTCAGTTTCATTCGCTGTGGTTTCGAC 26646 29 100.0 32 ............................. TAATCGAAATCGGTGTTTTTTGGTATGACCAT 26707 29 100.0 32 ............................. GCCGAGATGTCAGCCGACTCATGGCCTTATAT 26768 29 100.0 32 ............................. CGCACTCAGCAGATAGTTGGTGAGATTAATGG 26829 29 100.0 32 ............................. GATAATGACTGACAATATCTTACCCGCTACCG 26890 29 100.0 32 ............................. CGTACCGCGCATGACCTGCGCCGCGTGGCAAA 26951 29 100.0 32 ............................. AGCAGCACGAAATACGCATGCGAGCTATGCGT 27012 29 100.0 32 ............................. CCAGTCCTCGCCAGTCTGCGCCGTTTTCAGGG 27073 29 100.0 32 ............................. GCACGCCGTAACGCGCGCTGTGGGTAATGTGA 27134 29 100.0 32 ............................. TCGTGTTATATCGCCCTACCAGTAGCACAAGT 27195 29 100.0 32 ............................. AGGTATTTGATGATTTGTAATCTGCTGCATAT 27256 29 100.0 32 ............................. CGGTTATTCTCCACGTTAGTGAACTGGAGCCA 27317 29 100.0 32 ............................. TTAATGCTTCCGGGGAGGTGGTAGCCAACGTC 27378 29 100.0 32 ............................. CACGGTATATGCGATCGCGATATTTAATCGCG 27439 29 100.0 32 ............................. ATCATCAATTTCGGCCAGAATGGTATCGACGA 27500 29 100.0 32 ............................. CATCACGGGTGAAATGTGCTTACCGATACCAA 27561 29 96.6 32 ........T.................... GATGTTTCTGTCGGGGTCGATCCGGTTAAGGC 27622 29 100.0 33 ............................. GATTTCACTCTGAGCGCCATTCCCCTGGAATGC 27684 29 100.0 32 ............................. CGCAGTAACGAAGTCGCGGGTGTGAAGGTACT 27745 29 100.0 32 ............................. TCCGAAGACCTTCAGAGCGCCGGACAGGAGTT 27806 29 100.0 32 ............................. TCTTTTTTCAGGCACATATCCGGTAAATTAGC 27867 29 100.0 32 ............................. CCAGTTTATTGCTATCTCCAGCCATTAAAAAT 27928 29 100.0 32 ............................. TGGGGGTAACTGGTGTCAGGCTGGGGGCGCGG 27989 29 100.0 32 ............................. TATATATGGGCATGAAATAGTTGCAGGAAATA 28050 29 100.0 32 ............................. GTCAGGCGTGAGTAAAGGATTTTCCTCGCCTC 28111 29 96.6 32 ................T............ TGGAAAGACATTAAGAGAGGGGGAATTAAAGA 28172 29 100.0 32 ............................. CGCCTGGGGGGATCGCGGTGAGTGATTCATTT 28233 29 100.0 32 ............................. GAGGGCGCGGAGGGTAACGTCTACGTGCTGCG 28294 29 100.0 32 ............................. GCGGTTGCCCTGATGGTATGGCGGCTGTGTAG 28355 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 46 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGTTGTCGGCAGGCGAAATCGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATCCCTGAGCCTGAATCAATGGGGGATAGCGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTCCCTCCTCGTCTGCGGGGGCGGCTCGCCATCTGGCTGCTGGAGGTTCGAGCGGGAGTCTACGTTGGCGATACCTCAAAGCGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGTGAATCAGGTTTCGAGTTCCAAACTTGGGGTGAGAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTTCTTCCCATTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAAATTGTTGGAATAAAGTTGGTGGATTGTTGTCGCCTCAAAAAGGCATTAAAAAACAGTAATATATGTTTAGT # Right flank : GGGGTTCACTTGGGTGAAACTGAACCAACTGTGCCCGCATTCGCTGGGATAAGCCCGTCACTAATGTTATCGATCCTGAGGGTGGGTACGAAAGCTTGCGGAAAATAAGTGTTGCTACCTGCCGCTCTTTAGCAGAATGCCCCCTTAATTAGCCGATATCACTGCTTTTTCACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGTATGGGGCGCCGTATTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGTCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATCATCTTCAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15134-14066 **** Predicted by CRISPRDetect 2.4 *** >NZ_UNYS01000057.1 Klebsiella quasivariicola strain 2485STDY5438283, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15133 28 85.7 33 T...G.G..T.................. TTTGCTGGTCCGCAGCGCGGTCGCGGTTGGGGG T,AA [15123,15127] 15069 28 100.0 33 ............................ CTTTTGATCTTCGCACCATTTTTCAACGGCTTT 15008 28 100.0 33 ............................ TAACCCCGGTTTGATCCAGTTTTTCAACCAGCC 14947 28 100.0 33 ............................ CAGACCTCTTCGTCCACCTCGACCGCCCTACAG 14886 28 100.0 33 ............................ TATCGCCCGGGCTCGCAGGCGCAGGACTATATC 14825 28 100.0 33 ............................ TACCAGTTACAGAAAGGGGATTGCCTCGAAGTT 14764 28 100.0 33 ............................ TATATTGGCTATATCCCGATTTATACAGGCATG 14703 28 100.0 33 ............................ TCTGAGCTGGTGGCCATTAATGCTGGAGCTGTA 14642 28 100.0 33 ............................ TAGATAACGACCCGGACGACTTCCGGCGGCGGC 14581 28 100.0 33 ............................ CAGATCCCACCAGATTTCCCGCAGCTCACTAAG 14520 28 100.0 33 ............................ TGTGGATTCATATGCTTTAGCAGGATATGCGCA 14459 28 100.0 33 ............................ CATCAGCAGAGAACCCGAGCGTAGACAGGCATT 14398 28 100.0 33 ............................ TATTGTTCGCGGCAAGTGTCATACGACCTGGTA 14337 28 100.0 33 ............................ TCATCCTTAACGGGTCGATGATTGAGCCTGTGA 14276 28 100.0 33 ............................ CCAGCCATCGGCAAAGCATATCGCGCGACCGTG 14215 28 100.0 33 ............................ CTCGCGCGCCGCTGCGGGCTGATCACGGCCAGC 14154 28 100.0 33 ............................ CAAAGAGGGGATCTGTTACGAGCTGCGCGACTA 14093 28 71.4 0 ........T.....T......C.TAGCA | ========== ====== ====== ====== ============================ ================================= ================== 18 28 97.6 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : ATTTTGAAGGACGGCTGAATAAAGTGATGACGCTGTAGAATTTTTAACATGACACAGA # Right flank : ATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATGATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAGTATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACCGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGGCTTTACCAGTCACATGATTTAATACGCCAGTTAAAACCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGTGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAATTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTACGATGAGGTAGAGCACAGGCTACAAATTGGCTGGCTTGTTGGTCTGGATATCTCCAGGTGTTGGAGCAGTGACAGAAATCCATTTTACATCGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //