Array 1 28-245 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUI010000180.1 Streptomyces buecherae strain AC563_RSS885 NODE_246_length_171_cov_31.000000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 28 29 96.6 32 ................G............ CAGGCCGTCAACGCAGACAAACTGGGCGGCTC 89 29 100.0 32 ............................. TGCGTCCACAGGCCGCCCGCGTTGGTCATGAC 150 29 100.0 38 ............................. CGGTCGATCGTCGCGCCGGTGCCGGTGCCGGTGATGAG 217 29 96.6 0 ................G............ | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 98.3 34 CTGGTCCCCGCGCGCGCGGGGATGGTCCC # Left flank : GATCCCCGGGTCCTGGTACGTCGACCTC # Right flank : ACTGAGAGCCTCCCGAGTCGGCGG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGCGGGGATGGTCCC # Alternate repeat : CTGGTCCCCGCGCGCGGGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [15.0-11.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 55581-55308 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUI010000185.1 Streptomyces buecherae strain AC563_RSS885 NODE_261_length_69706_cov_55.267895, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 55580 29 100.0 32 ............................. CTGCGTCACCCCGCGTCACCCGCGTCACGCGT 55519 29 100.0 32 ............................. TGAGGGATGTGCGGGTCCGATTCGGGGAAGCG 55458 29 100.0 32 ............................. CCACATCAAGGCCGGCCGGGCGCGCAGCAGGC 55397 29 100.0 32 ............................. GGATGGTGTCCTCGTCGCGAACCCCTACAGCG 55336 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 CTGGTCCCCGCGCGCGCGGGGATGGTCCC # Left flank : GCTCAAGTCTGGTGCGTTCGATGGTCAGTCCGGTGCGGGCAGTCTCCTTGAGGGCGCGCAACCAGGTCATACGGCGAGAATACGGCGCTGATCACGGCAAACGTGTTGGGGCCCACGGGGCGCCTGGGCGGCGGGCCAGTCGGGACGACGCGCCCTGCGCGTACCGGGCCGGGGCGGGTCGGGCGGCGCCGGCCCCCCTGGGCAGTTCGGGCCGGGCTGGAGCGGGCGCATTGTCACGCGTCGCCTCCCGTGTGCGGCCTCCGTCCGCGCGGCGTCCGCGAGTCGCGGAGTACGCGAGTCGCGGAGTACGCGAACGGGAGGGCAACCGTGCGCGGTGCGGGCCGCGCGGTGCGGGGGTCGGCCGCTACGGTGGGGGCTGGCCGCCGGGCGACTTGGCGGTATGGGGCGTTGGAGGGAGGCGCGGGATGTGCGTTATGTCGCGATCGCAAGAAGTTGCAGAAAACCGGGTGTGCCCGCGCTAAACCCGCAGGTCAATTGCT # Right flank : GGTGCCGCTGGCAGCCGGGCTCGTCGCGTCCCCNNNNNNNNNNCGCTGGCAGCCGGGCTCGTCGCGTCCCCTGGTCCCCGCGCGCGCGGGGATGGTCCCATGATCAACGACCGGCAGATGGTCGTGACCGGCTGGTCCCCGCGCGCGCGGGGATGGTCCCCGCATCATCCGCGCATCAGACGGGGAGTCCGTCTGGTCCCCGCGCGCGCGGGGGNNNNNNNNNNTGTCCTCGTCGCGAACCCCTACAGCGCTGGTCCCCGCGCGCGCGGGGATGGTCCCGGTGCCGCTGGCAGCCGGGCTCGTCGCGTCCCCTGGTCCCCGCGCGCGCGGGGATGGTCCCATGATCAACGACCGGCAGATGGTCGTGACCGGCTGGTCCCCGTTCTGGAGACCCAAAGCGACAAGCGGTCCGCTGGTCCCCGCGCGCGGGGGGATGGTCCCTCGGCGCCTACGACCGCCGGATCGCGGAATGGCTGGTCCCCGCGCGCGGGGATGGTCCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2654-3101 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUI010000094.1 Streptomyces buecherae strain AC563_RSS885 NODE_101_length_18877_cov_54.604122, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ================================= ================== 2654 26 96.2 33 ......................A... CGTCACCCGAGGCGAACGGCTTCCGGGCGGTGA 2713 26 92.3 33 .......G..............A... CGCACCGGAACTGGGGGTGAGATAACCAGCGCC AC [2718] 2774 26 96.2 33 ......................A... CGGCATCGGCACCTGCCGGGCCACCGTGCCGTA CG [2790] 2835 26 100.0 33 .......................... CCTGCGCCTTGTACTCGTCAGACCCACGCCGAA 2894 26 100.0 33 .......................... CGGGCGAAGCGCCGTGGGCGCCGCCCCCTGCTT GC [2909] 2955 26 96.2 33 .......................T.. TGCCTACGCGTACGTATCCGCCGTATCCATCGT 3014 26 88.5 33 ..............G....G...T.. CTGGGACGAGCTGGCGCGCCGCGTCTGGGCGCC GGG [3034] 3076 26 96.2 0 .......................T.. | ========== ====== ====== ====== ========================== ================================= ================== 8 26 95.7 33 CTGGTCCCCGCGCGCGGGGATGGCCC # Left flank : CGGCGGTCGCGCCAGGGCCGCGCTCCACCCGATCTCGGGCCGGGAGGACGTCGCCCACCACCTCCTCACCATCGCCACCCAGGCGCCCGGCCTGACGATGGTGGAGCGCACGGTCAACGGCCAGCCCGGCGTGGTCCTCCAACTGGACGGCGTGACGGTGTCGGTGATGTCCCTCGACGTCAGCGGCGACCGCATCACCCACATCTGGGGCATCCGCAACCCGGACAAGTTGCGACCGTGGACGGCAGGGTGAGTTGGTGGAGGTGCGCGCGCTGTACGGGGCGGGGGGCCTTCCGGGGGCGGCGTGAGTGAGGGCGGGTGAGCGGGTGGGGTGGCTGCGGGCGTACGTCGTGTGGGTGCGGGGCGGGCCCGATAGCCTGGGCGTACGGCTTTACGGGGTGGGTGCCGTGAGTGGTTTGTCGGGCTTGGGTGGTAGGTCGGAGTCTGCGGAAGTTGCAGAAAACCGGGGTCCGACGCGGTAAAGCCGCAGGTCAATTGCT # Right flank : CCACCGAGCACCCCACCACCAAGCCCGTCGACCTCCGGTCCCCGCCCCCGCGGGGCCCCGCACAGCCAGCCCCTCACCCGTCCCCGAACGCCGCCCCCGTCACGTCCCCCACGAACTCCGCCCGGTGGTAGTCGTACGTCGTGATGCCGGACACCTTGATCAGGACGCAGTAGCGCTCCACCGTGGCCAGTCGCGCGGCCACCTGCGCGTACTCGCGGCGGAGGAAGTGGATCGCCGCCTGGTTCGCGACCGCGCTCTGGCCGCAGACCAGGATGATCGGGCGGCGGAACTCCTGCGGGGTGAACTTGGCGACGAGGGCGTACGACTGGTTGCCGGGGTCGAAGCGGTAGCGCTGGCCCGCGACCTCGATGGCTACCGAGTCGTCGCCCTCGGGACCGTACGGGTGGAAGGTCACGCCCGGGAGGTGAGCGGAGAGGTGGCCGGCCGTGCGGGCGTTGGCGCCGCCGAGGGGGCCGCCGACGCAGAACTCCGTGTGGTCG # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGGGGATGGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGATGGTCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.90,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11496-10681 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUI010000188.1 Streptomyces buecherae strain AC563_RSS885 NODE_284_length_26691_cov_51.588249, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 11495 29 96.6 32 ..............T.............. GTGGTCGAGACCACGGCGATGCCGGACAACCA 11434 29 100.0 32 ............................. ATCTTTCGTCCGGCGCCGGGTTCATCGCTCTT 11373 29 96.6 32 ................G............ GCCCGGTGCACGCTGCGCGTCACCGTGTGGCA 11312 29 100.0 32 ............................. AGCTCGCGGTAGAACTCCACGCGGCGGCCGCC 11251 27 93.1 32 ........--................... GAGTCGGCGTCGACCGCCGAATCGCCGTTGAT 11192 29 100.0 32 ............................. AGGAGGGCGGCGGCGGCGCCACCGCCGATCAG 11131 27 93.1 32 ........--................... AGGGTTCGGATGACGACCTGAATGCGGTAGTA 11072 29 96.6 32 ..............T.............. GGGATTCGGACTACGGCCTCGTGGTCGGGGAT 11011 29 96.6 33 ..............T.............. TCGGCGACACCGGTTTCTTGTCCGGCCGGCTTG 10949 29 93.1 32 ...A.......A................. GGTCCGCCCGCTGTCGCCCCGCTCCAGTTCGC 10888 27 93.1 32 ........--................... GCACCGCCTGCCGCGTGCCCGTCCCCACCACC 10829 29 93.1 32 .........................C..G AACGCGCTCGTGTACGCCTTGACCGCCGCTTC 10768 27 86.2 31 ........--.............AA.... CAGGCGTCGCCCGCGAAGGTCGCCGAGCCGA 10710 29 72.4 0 ACC.GT.....A..T.........C.... | T [10701] ========== ====== ====== ====== ============================= ================================= ================== 14 29 93.6 32 CTGGTCCCCGCGCGCGCGGGGATGGTCCC # Left flank : GACGCCGTGGCCCCGCCCGAGAGCGGGAGCAGCTCATCGAGAGGGCCCGAGCACCAGGACCGCGCCGGCGGAGGAGGGCAGGAGACGGCTACTGGAGAGCGACGATGTGGGTTTGGGGGCTATCGCCACGGTGATGTCGCGATGGACGACGACCGTACGGGCCTCGGCCGTGTCGGCGTTGAGTACGCATCGGCGCGATGGGGCTCGCCGCGTTTCGGGCAGTCACCCACGCGCGCATGCTGTCGCGCGTCAACACGTTGAACGGTAGAGCGGCGTTGGTTCTCACCCACGAACCCGACTCTCGATCGGATCGACTCATCATCATGGTGAGCGTGGCACTGCTCATCGGGGAAGCTGCTGAAGCGCAACGCTAGGCTGAACATCCTTGCTCGCCGGAGGGATATGACATGGGCGATTCGTCGTGGTTGGGCGATAGGTCGCGATCGATGGAAGTTGCAGAAATCCGGGGTCTCGCGCGGTAAAGCCCCAGGTCAATTGCT # Right flank : GAGGCCGCCACGACGGCGGAAGCGGGCTCGCCTGATCCCCGCACGCGGGGCTTACCTCCCAGCACCGACAGCCCCAACCACCCACCCGCCGGCGCGGCGCGCCCCCACCGAAGGCCAGCGAGCCGCCAGCGACGCGCCGCACCCCCGGGCACCCCGAGCCGTGTACGCGGGGGGCCACCTCAGCCCCGACGCCCCGCTGACACCCCACCGAGCCCCGCAACAAGACCGGCCCCGCCAATCGCCCAGCACCCCACCCAGACCGCCAATCCCCCCGCCCCACAACCCCGGCGCCCGCGCACGCCCCGGCGCGATCTTCCTCTACCACTGCTCGACCGGCATTACCTGGTCAGAAGAGATCCAAGTTTGTGAATCAATTCACACCTACCCCTTGGCCGGGCCCCGTTTTCCGTGTTGAGATGCGCGCACGACTTCCGGCTCGATGGCGCGCTTGGGGAGGGCAATGTGGCGGACACCGCCATGTCACGTTCTGGATCGTCGGA # Questionable array : NO Score: 5.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGCGGGGATGGTCCC # Alternate repeat : GGTCCCCGCGCGTGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 34426-34759 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUI010000108.1 Streptomyces buecherae strain AC563_RSS885 NODE_121_length_67852_cov_56.234303, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 34426 29 100.0 32 ............................. ATGGCGCCGCGCTCCTCCGCTGAGGCCATGTC 34487 29 100.0 32 ............................. TCGATTCGGTTCGTCGGAGCATTCCGAGCGCG 34548 29 100.0 32 ............................. ATCAGCTCGGCGTACGGGAGCGGCACGGCCGT 34609 29 100.0 32 ............................. AGACCGGGCAGCCAGAACCCGGTGACGCAGAT 34670 29 96.6 32 .........................T... ATGCCGCACCAGGCCGGCCGCCTGTACCTCAT 34731 29 86.2 0 ....C.........C......C..A.... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.1 32 CTGGTCCCCGCGCGTGCGGGGATGGCCCC # Left flank : CCCGCCGCGTGTACGCGCGGCTACGTACGCTGAGCTCATGGTTGAGAACACCGTGCCCGTACGGGAAGCCCGCGCGCGTCTGGCGGACTACATCAACCGGGCCGAGGAGGGCGTTCCGACCGTCCTCACGCGCGACGGCGTATCGGTGGCGGCCCTAGTCCCGATCTCGGACCTCGAAGCGCTGGAGGAACTGGAGGAAGCGGCCGACGTGTTGTTGGTGCATGAGGCGGAGGCGGTCCTGGCCGAGGGCGGGCCGACGGCGACGATGGCCGAACTGCTGGCGGACCTGTTCAGCGAGCGCGGTGCGGGCGCGGCGTGAGGTACGCGTTCCGGTTCGCCGCGCCAGCTCCACGGCACGTCGGGCGTCGCCGTGGGCCGAATAGCCTCCCCGCCCGAAAGGACCTTGCGTGAGCGATTTGGCGAGATTGGGCGATAGGTCGCGATCAGTGGAAGTTGCAGAAAACTGGGGTTCCGCGCGATAAAGCCGCAGGTCAATTGCT # Right flank : CCGCACCCGACAGCGCCCCCGACCTACCGTCACCCCCCGGCGCGCTCCGCCACCCCGAACGCGATCCCGTCCAGAATGTCGTGCTCGCTCACGACCACCTCGCGCGCGCCCGCGCGTTCCATCAGGGCCAGCAGGACGAGCGCGCCCGCGCCGATGACGTCCACACGGCCCGGGTGCATGACCGGGATGGCGGCGCGTTCGGCGTGGGTGGAGTGGAGGAGGCGGTCGGTGATCTCGCGGACGCGGTCGAGTGGGATGACCGCGTGGTGGATGGCGGCCGAGTCGTACGCGGGCAGGTCGAGTGCGATGGCGGCGATCGTGGTGACCGAGCCGGCCAGGCCGACCAGGGTGTAGCCGCCGGCGGCGGGGCGGAGCGGGACCGTCTGCTCGACCGTGTCGAGGGCGGCCTCCACGTCGGCCCGTATCGCGGCGATCTGGGCTTCGGTCGGCGTGCCGGGTTCGGGGACCTGGCCGGTGGCGTCGGCGAGGTGGCGTTCGGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGTGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGGCCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14239-13966 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUI010000070.1 Streptomyces buecherae strain AC563_RSS885 NODE_77_length_14398_cov_58.013821, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14238 29 100.0 32 ............................. CGCTACCAGGGCCAGTACGGCCCCACAGAGTC 14177 29 100.0 32 ............................. AGGTCCACCGAGGCGGGCTGGACCCGCTCCGG 14116 29 100.0 32 ............................. ACGTCGTCCCAGTTCAATGGTTCCGGCGGTTG 14055 29 100.0 32 ............................. CTCGACATCGACCACATGGTGCCCCTGGCCGA 13994 29 96.6 0 ..........................G.. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 CTCTGGTCCCCGCGTGCGGGGATGGCCCC # Left flank : GGGGGAGGGTTCCGTCGGGGGCGGGGGCGGGGAGCGGGAGGCGGAGTGAACTTCCGTACGCGGCCGGGGTGATGATGGTTGGCTAGCGGGTGCCGGTTCCGTGCGGACCATGGGGTGTGCTGGACGGCCGATAGCCTGAGCGAGGACCGAAGAACGCGAGGTTGGCGCGCGATATGGTGTCGGATGTACGAGATGTCGGGATCGCAGGAAGTTGCAAAAAACGAGGTGGGGTCCCGGTAACGTCGCAGGTCAATTGC # Right flank : ACTTCCAGCTCGACGGCTTTCCCCAGCTCGTCTTCTGTCCCCGGAGGGTGGCTGCTCGCCAGTCCCCGCGCGCCACTGCGACTTCCATCGGGCGCCGCGCCTCACATGGTCCTATCCCGATGCGCTCGCTGTCTGTCATGCCAGCCGTCGATGGCGGTGACGCGAGCCAACGCTGCTTGGTGTTCGTCCTCCGACACGACACCGTGCTCCACTTCGAGGCGTGCGGCCAGCTCGCGCAGTCGGTTCATGTCGTCCTGGTGAGCAGCGGCGGCAGCGATGTAGTCGGTCACCCCGCGCGCGCCGGGGCGTAGTTCAATCGATGCCACCGACTCTTCCGGCACGGTGATGGTGATCTTTCGAGCAGCCATACGTTGAGGATGCCATGTGATGTCGAGCTTGCAATCGGCGTAAGACATACACGTACCGGCGACACAGAGAGAGCTGATGCATCACAGCACGTGGAGGATGCGTCGGGCTCGGAAGCTCGCGGGTGAGGCGGT # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTGGTCCCCGCGTGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.30,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 3263-3051 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUI010000075.1 Streptomyces buecherae strain AC563_RSS885 NODE_82_length_8870_cov_63.317589, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3262 29 96.6 32 ...........A................. CTGTCGCCGGCGCACCGGGGGATCATGGACGG 3201 29 100.0 32 ............................. GTGCAGCTCATCGATGATCCCGCCGTGGACGT 3140 29 100.0 32 ............................. CGTGGGCACCCCGGAGGAAGGTGGAGGAGCAG 3079 29 75.9 0 .......T............A.CTC..TT | ========== ====== ====== ====== ============================= ================================ ================== 4 29 93.1 32 CTGGTCCCCGCGCGTGCGGGGATGGCCCC # Left flank : GATCCGGAGGCCACGCCGTACACCGTCCGGGCCAGGTGTCTCGCGTGCGACGACCTGTCTCCGGAGCCCGAGCCGTCGGAGTCCATCACGGCCCAACACGAGCGCGCGCAGCACTGGTGTACGCGCCACGCGGCCCGCGACCATGCGGACGGACGCCACGTCCGCTTCGCCGCGACGGTCACCTTGCGGTGGCGCGTGACGCCTGCTGAGGACATTGGGCCGGTGGCGTTGTGAGGGGTTGTGGGGGTGTAAGGGTGTGGGGGCGCCTGGTCGGCGAGTTGCGGGTGACCTGCTGTGGGTGGCTTGCGCTCGCTGGCCTTCGCTTCGCGATCGTCGGAACGCGTCGTATCGGCGGGGTTGGGCGATAGCCTGGTGGGCCTGCTTAGGGGCGGGGCGCCTTGGGTGAGATGTCGTGGCCATCGCTTTCGGGCGAAAGGTCGGAGTTCGCGGAAGTTGCAGAAATCCGGGGCTCGGCCTGACAAACCCGCAGGTCAATTGCT # Right flank : GCGAGGCCCGATGGCTGCGCGTGGCTGAGATCAATCCAGCCCGCACACAGACACCACTCCCTTGATAGCTCAGGCAGGCAGAGCACCCGGTGGCGACTTCACCGGAAGGTCCCGGTTCGAGTCCGGGTAAGGGAACTGCTCGCTCTGGCTCTGTGCACCAGCACGGTGCATGACCGGGGCCGGTCGCGAGTGCACGACGGGAAGCGACATCAAGGAGGAAACAAGTGACTGCGATTGTGCCCCCGGTTCCCTTCGGTCTTGAGCACCTGGTCTCTCCGCCCCCGAACACTTCGGAAGCCCCGGTCATCACCTACAGCGACGCGCTTCAACTGAACGTCTCGGCTGCGGGGAATCCGTGGCACGCCGAGGCCGCGAACAAGCCGGAGACGCAGACGGAGACGAGCAACGGCGACGGCTCGTCCCCGGGCTCCGACAGCGGCACGGACCTCTACTGACCCATGCGGACAATCCTCATCCTGACCGGCCGTGACGACCTGACG # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGTGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGCCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 23258-23591 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUI010000195.1 Streptomyces buecherae strain AC563_RSS885 NODE_321_length_107760_cov_55.318382, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 23258 30 93.3 31 .............A...............T TACCCACCGTCGTAGACGCCACCAGCACCAT 23319 30 100.0 30 .............................. CGACCGCGGCCGGTTACTCCCCAGCGTCGG 23379 30 96.7 31 .............................G GCACGCATCAGGCGCGTGGCGAGCGTGGTCG 23440 30 96.7 31 .............................C GCGCGAGATCCCCGACCGTGCTGACACTCCC 23501 30 90.0 31 .....................GC......T GGAGGGGTGCGTGCGCTGCACCCCGCGCGGC 23562 30 86.7 0 .....A.....A.............C...T | ========== ====== ====== ====== ============================== =============================== ================== 6 30 93.9 31 CTGGTCCCCGCGCGTGCGGGGATGGACCCA # Left flank : CGCTATCACGAGTACGGCGGTGCCGAGACCCTCGTGGTCGAGCAGGCGCCGACCCCCACCCCGGCCCCGGCGAGATCCGCGTCCGGGTGGCGGTGGCCAGCGTCAACCCCGTCGACCGGAAGGTACGTTCCGGCGCGGTACGCGAGCTGCTCCCCGTGGACCTGCCCGCGAGCCCCGGGCGCGACGCCGTGGGCGTGGTGGACGAGATCGGCGCGGCCGTACGGGGCATGAGCGTCGGCGACCGCGTCTCCGGCCTCGGCGGCGTCACCGGCGCCACCACCGAACTGGCCGTCCTCTCCGCCTGGGCCCACGCCCCGGCCACCTCGAGGGCTGGGTGTCGTTGCGTGGCGGCTTCGCGCATGGGGGTGGGGATAGCCTGGGGAGTCTGGTGAGTGAGGGGGAGTGTTGTGGGTGTTCTGCGGAACTTGGGTGGTAGGTCGGAGTTCGTGGAAGTTGCAAAAAACCGGGGTGGCGCGCGGTAAAGGTGCAGGTCAGTTGCT # Right flank : TTCATCATTGGCAGGGCCAAGCTTGTCAGCGCCTGCTCCCCGTGCGGAGATAGTCATGCGAGGACCCGAGCCTGGCGTCTCGTATTCGCCCCCGTGCAGGCAGACCAGCGAACTACGAGCCCGAAACGAACGCCTTCGCCTCGGCGAGCGCCGCGTCCCACGGAAACGGACACTTCCGGCCCGGCTCGTTGGGAACGAACCCGCCGTCCCCGTACAACACGCTGACCCCTACCGCACGCAGCTCCGCGACGGAGCGTGCGAACTGGGGATGCTGGGCGTACGCCGAATTCACGCACGGCATCGTGATCAGCGGAATGCCCTTGCCGATGCCCTCGGCTACGACGCCCACCGGAAATGACGAGATCAACCCCAACGCCCAGGCGTTGATGCTGTTCATGGTGATCGGGGCGAACAGGATGGCATCGGCTCTGGGCCAGGCATCAGCCTCACCCGGGCGCTTGTACCGAGACCGTACGGGGTAGCCGGTCAGCTCTTCCAAC # Questionable array : NO Score: 3.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGTGCGGGGATGGACCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 27183-28117 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUI010000195.1 Streptomyces buecherae strain AC563_RSS885 NODE_321_length_107760_cov_55.318382, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 27183 30 93.3 31 ................C............C GCGCCTCGTTGTCCTGGAGCAGGTCGATCGC 27244 30 96.7 31 ................C............. CCCGGTGCACGCTCCGCGTCACCGTGTGGCA 27305 30 93.3 31 ................C............T GGGCGGCGAGCGACGAGCGGTGCCCGTGTGG 27366 30 96.7 31 ................C............. ATCACGGCATGGACGCGATGCGCTACATGGT 27427 30 100.0 31 .............................. GCGCGACGGCCCCGCAGCAGGTTCCCGGCCA 27488 28 90.0 32 ...................--........T CGGGGAGAGGGTCGCGATCCTGATCCCACGCG 27548 30 100.0 31 .............................. TCACGATCGGGGGCGGCGGCATCCTGCAAGT 27609 30 93.3 30 ................C............A TCCACGTCGCCATTTCGGGCGCGCGGGCGG 27669 30 93.3 31 ................C.....C....... CCAAAGAGGGTCTGCGAATTCGGCGACAGCA 27730 28 90.0 31 ...................--........A GGAAGGGGCGGACGATCAACGACCGTCCGCC 27789 30 100.0 31 .............................. CTGAACTGGCGCGCTGCCCCGACGTGCTGAT 27850 30 93.3 31 ................C............C GCATCAACCAGACGATCTTCGATCTCCTGGT 27911 28 90.0 31 ..................A--......... TGATCCTGAGCAACACCGAGACGCTTGGCCG 27970 28 83.3 31 ....GT.............T--........ TCGTCGCGACCACCTTGCCTTCGAGCCGCCC 28029 30 73.3 31 ..A.C.......TA..C..C.....G...A ACTCCGCAGCATCATCCGAGACGGAGCCGAC 28090 28 83.3 0 ................-....-...G..GC | ========== ====== ====== ====== ============================== ================================ ================== 16 30 91.9 31 CTGGTCCCCGCGCGCGGGGGGATGGACCCG # Left flank : CCCGACGGCCGCCATCTCCGCTATACCGCCCACGTCACCCTGCGGTGGCTGGTCACCCCCGCCGAGGACATCGGGCCCATCGCACCGTAGGCGAGTGGAGGCGGGGCGGGTGATGAGGCGTGCAGGCGCGCGACTTGGTGAACCGTCCATCGATGGCCACGCTCCAAGAGGCTGCTGTTGGCGTCCGGTTCACGTGCGGAGCGGCTTGCGGATACGCTGCGAACACCGTCTTGCCGGGAGGTTGAGGTGAGCATTATGTCGAACTTGGGTGATAGGTCGGAGTTCGCGGAAGTTGCAAAAAACCGGGGTGCCGCGCGATAAACCCGCAGGTCAATTGCTCTGGTCCCCGCGCCTCGTTGTCCTGGAGCAGGTCGATCGCCTGGTCCCCGCGCGCGCGGGGATGGACCCGCCCGGTGCACGCTCCGCGTCACCGTGTGGCACTNNNNNNNNNNGCGCGGGGATGGACCCCGCCTCCACGCCCGTCGGCGCGCCGCCGTGGC # Right flank : CCCGCCGACGGTGGCGGCAGCAACAGGCACAGGAAGGCTGTCGATGGCCAGCCCGCGTGGGACGAGCCGACACACATGGCCGCTACCCTGCCCGCATGATTCGAGCGGTGGTCTTCGACGTCGGGGAATGCCTCGTCGATGAAACGCGGGAGTACGGCACCTGGGCCGACTGGATCGGCGTGCCTCGACACACCTTCGCGGCGACGTTCGGCGCGGTCATCGCCCAGGGCCGGGACTACCGGGAGACCTTCCAGGAGTTCCAGCCAGGCTTTGACCTCTACGCCGAGCGTGAGCGTCGCGCTCAGGCCGGCCAGCCGGAGCACTTCGGGGAAGAAGACCTCTACCCGGACGTACGGGCCACGCTGCGCCAACTCCGCGCCCACGGACTGTGGTTGGGCATCGCGGGAAATCAAACCGTGCGAGCGGGCAAGATCCTGCGCCAGCTTTTCACCGATGACGTGGATCTCATCGGCACTTCGGACGACTGGGGTGCTTCAAAG # Questionable array : NO Score: 5.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGGGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGTGCGCGGGGATGGACCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-26] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 29469-29860 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUI010000195.1 Streptomyces buecherae strain AC563_RSS885 NODE_321_length_107760_cov_55.318382, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29469 29 100.0 32 ............................. TGGGCCGGCGCACGCTCGACAAAGCCGAGGTC 29530 27 93.1 32 ........--................... CACTCCCCTCTGCGCGACGTCGCGCAGTCCCC 29589 29 100.0 32 ............................. ACACTGCGGCACGTCGACACCTGGCTGCCGGT 29650 29 96.6 32 ................G............ TCCTCCGCCAGGTCGTCCAGGCCGTCCTTGAG 29711 29 89.7 31 .....G..............AC....... GGCGCAACACCGGGCCCATCCGCTCGCCCAT T [29736] 29772 27 93.1 31 ........--................... CGAAGAAGGGCAGCCACCGCATCATCTCCGC A [29797] 29831 29 89.7 0 ................G..T.G....... | A [29850] ========== ====== ====== ====== ============================= ================================ ================== 7 29 94.6 32 CTGGTCCCCGCGCGCGCGGGGATGGCCCC # Left flank : GTCCATGCCAGTCGCGAACCAGGTGACCGCGAGTTGATCGAGCGCACGGCACGCCGCTTCGCACGCCTCGTCCGGGCGACCTGCCGTCGGAGTCCATCACCGGTCAGCATCAGCAGCTCAACGCTGGTGCACTAGCCACGCGGCCCGCGACCATCATGGCCGCCACCTGCGCTACACCGCCCACATCACCTTGCGGTGGCTGGCCACTCCCGGTGAGGGCAACGGGCCCATCGCGCCGTAGGCGGGCGAAGGCGGGGAAGGTGAGGTGTCGTTCAGGCGCACGTCGTAGTGAACCGCCCATTGGTGGCGGGCAGTTGCGTGCTCCAAGAGGCTGGTGTTGGCGTCCGGCTCACGCGCGGAGCGGCCTGCGGATACGCTGCGAACACCGTCCTGCCGGGAGGTTGAGGTGAGCGTTATGCCGGACTCAGGCGATAGGTCGGAGTTCGTGGAAGTTGCAAAAAAACCGGGGCGCCGCGCGATAAACCCGCAGGTCAATTGCT # Right flank : CCGAGCCACCGCAAAGCGCTGTCCAAGCCATCGCCCCACACCACCCCCGCAACTACATCGTGGCCCGGTCCGAGGCGGCGTGCAGCGAACCAAGCAGGCTCAGCGCCTGAGCGCTGGGACTGGCGGGTTCGGCCTGGTAGATGACGAGTTGTTGGCCGGGGGCGTCGCGTACGTCGAAGGTCTGGTAGGTGAGGGTCAGGGCGCCGACATCGGGGTGGAGGAAGTGCTTGGCGTCCTGGGTCTTGCCGCGCACGGCGTGGGTGGTCCACAGGTGGATGAAGTCCGTGCTGTGCTCGGTGAGGGTGTGGACGAGTTCCCGCAGTCGCGGGTCATCCGGGTCGAGACCGGCCGCCTGGCGCAGGTGGGCCACGGTGGCCTGCGCCGTGCTGTTCCACCGCGAGTAGACCTGTCGTCCCGCCGGGTCGAGGAAGACCATGCGGGCCAGGTTGTCCGCCCACTCGAAGGGTGAGTGCAGGGCCTCGGCCAGGGTGTTGGTCGCC # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 32330-32855 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUI010000195.1 Streptomyces buecherae strain AC563_RSS885 NODE_321_length_107760_cov_55.318382, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================== ================== 32330 29 100.0 32 ............................. GGGTTGGTCAGGGGCGGGTGGCGGCGAAGTAG 32391 29 100.0 32 ............................. CGCACGTCATCTGGCGCCGCATCGGTACCCAC 32452 29 100.0 32 ............................. CCAGCGGCGGACTTCGGCGCCGGCTTCCGCAT 32513 27 93.1 32 ................--........... ATCTGCAACAGGGTCGACAGGAGTTCGGTCGG 32572 27 93.1 32 ................--........... CCGTGGACGTGGATTCGGCGCCCGTCGAGCAG 32631 29 96.6 32 .........C................... ACGCCCCCACCCCCGCCGTCCTCACGCCCGAG 32692 27 82.8 32 ...........A....--......AC... AGGCCGGTGAGCCCCTGACCGTCGCCGACGCC 32751 29 75.9 46 .............A.......CACCC.T. ACCCACCCACCCCCTCCCGACACACATCCCGCACCTCGCCCAACGG 32826 29 62.1 0 ....AA....GC......TACG.C.C.A. | A [32840] ========== ====== ====== ====== ============================= ============================================== ================== 9 29 89.3 34 CTGGTCCCCGCGCGCGCGGGGATGGACCC # Left flank : CCCACAGGTCGACGTCAACGAAATCATCGTCCGCCCGGCCGCGAGTGCACAGTGAGTCTCAGTGGTGGTGTTCGTGTCGCCCGTGGGCGATGTCGACCGCGCTGATGCTGGTCTGCACGGACTCGCCCCGGCCCGCCTCGTGACACGCGACTTTCTGAGGGACGGGAGCCTTGGCGCTACGTCGTGGCGGGTCCAGCCTCCTCGCCTCGGTCGCCGGTTCGTACGCCGTCCAGGTTTGCGTGCTGTGCCTGGCCTGACGCATGTCGCGTCAGCGGGCGGCCGAGTGAACCGGGCACCGCCAGCAGGCAGTTGTGTGCCTCTGAGGGCGCGATAGGTGTCGGCAGTCGGGCTGCTTGTGGGGGTGACCTGCGGATAGGCTGCGGGGGCTGGCGCGTCAGGAGGTTGAGGTGAGCAATATGCCGGGCTTGGGTGATGGGCCGGAGTTCGCGGAAGTTGCAAAAAACCGGGGTGCCGCGCGATAAACCCGCAGGTCAATTGCT # Right flank : CCGCGCCGACGTTGGAAGTCGGGGTGCTGACCAGTGCGCTGGAGGAACCCAGCTCCCGCAAGGTGACCGCGGCGGCGAGGGTGATGGCCTTGCCGTAGCCGCGGCCTCGGTGTTCGTGGTGGACGCCCATCGGCTCCAGCACTCCGGGCTTGCCCGGGCCCGCCGACCAGACGGTCACCGTTGCCACCGCCTCGCCGTGGGCGTCGTGCGCGAGCAGGCAACGGGCGTCGGCGTACGGCAGGCCGGCGGCCATCGCGCGCCAGCGGTCGGGCGTGAACGTCGATCCGCCGAACGACGCCCGCTGTACGTCGGCCCGTTCCCGCGCCCGTTCCGGGCCGACCACCTCGATCCGTACGCCCGGGTCCTCCACCGGCTCCGTGAGGTCGCGGCGCAGTGGTGTCCACGGCTCGTCGGGGTGCCAGTCCGCATCGAGCAGCAGGTCCTGGAGCACCGCGTCCATCGGGGCCTCGACGCACACCCGTTCCGCCGGCAGGACGCCG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27856-27156 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUI010000078.1 Streptomyces buecherae strain AC563_RSS885 NODE_85_length_44801_cov_57.078571, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27855 29 79.3 32 TGAT.G.....A................. GCGCGCGCCACCGTCCCCTCCGTCGAGTAGGT 27794 29 100.0 32 ............................. ATGATGAGCAGCGGCGCCAGCACGGCCACCGC 27733 29 100.0 32 ............................. GTGACAGCCGTCGCGTGCGACACCCCGTCAGC 27672 29 100.0 32 ............................. CCGTAGTACGCCTCGGCGAGGATGAGGACGAG 27611 29 100.0 32 ............................. ACGCCGGACATGCTGGAGACGCTGGAGTCCGG 27550 29 100.0 32 ............................. GTCTGCCGCGCGCCGCCGTCGAGGCCGCGCTC 27489 29 96.6 32 .....................A....... TACGCGCAGCTAGCGGAAGCGCTGGCACGCTG 27428 29 100.0 32 ............................. CGCGAGCGCCTCATGCTCCAGCTCGCTGGCCC 27367 29 96.6 32 .........................C... TTCCTGGACACGAACCGCCGACTGGCCGCGGG 27306 29 93.1 32 ...................G..A...... GCGTACGCCGCGTGCCGTGGCCGCCGCCTCCA 27245 29 93.1 32 ............T.....A.......... TTTGCGCGGTCGGTGACTTTGCCGCGGTGTGG 27184 29 89.7 0 ............T....C.........T. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 95.7 32 GTCCGCTCCGCGCGAGCGGAGGTGTTCCG # Left flank : CACCTGGACGACGGCACCACCCTGGAAGTCACCCGGACCGCCAGCGACGGCACATCCAACGCCAACTCCCTGCTCTACGGCGCCGCCTGGCGAGCAGCCAAGGCGCTCGGATACCGCCGGTTGATCACCTACACGCAGGCCGGTGAGAGCGGCGCATCGCTGCGCGGCGCTGGTTGGCGCGTCCTGGCCCACCGCCCTCCTCGGCCGGGCTGGGACCGTCCCTCCCGCCCGCGGACCGACCACGGCACCGCGCATGTCGCCCGCACGCTGTGGCAAGCCCCCTGACCCGCCCGCTGGCCCTGACCCGCCTCTGCGTCCTCACCGAACGGGAGACTCCGCCATTTCCGAACACCACATCGACCTACTGCAACAGATCGATCATCTCCGCTACCTGGGAGATGAGTTCGCCACCTTGCACACCACCGTCAATGCACTGGAGGCACGACCCGGCAGCGAGTTGCTGCAACGACTGGCCAAGCTGATCGGCACCACCCAGGTGT # Right flank : ACGCCCGAAGTTTCATCTGCACGCAGAGTGACAGCACAAGGCGAGCCTGTATCTCGCTACGACACTCCCCGCCCTAGACCCGGTGGGGAGAATCTGGGGTCATTAAGAGGCGAACCTACTGGTGAGCGGGGTGCGGTAGACGACTTCAAGAAAATCTCTTCGCCCTAACCGCGAGGCAAGTCAACTCGCGAGGCCGAGGTCGATGATCTTTGCCGCTTTCCCGATCGAGCCGGGCATGAGATGGCGGTAGACCTTGAAGGTGACGTCCACACTCTTGTGCCCCATCCACTCGGCGACGTCGGTGATAGGGATGCCGTGGGACAAACAGTTGGAAGCGAAGAAATGGCGGAAGCTGTAGAGCACCATCCCTTCAGGCATGTCAAACACTCTCCGCCTCTTGATCCGCTGCCACTGATTCGACAGGCAGTAGTATGGGAACGTTTGGCGTGGATCACGAGGATGGTGCAGCAGGTACCCCCCGACCGTGCCATGCTTGCCCA # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCGCGCGAGCGGAGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCTCCGCGCACGCGGAGATGTTCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 106211-105351 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUI010000076.1 Streptomyces buecherae strain AC563_RSS885 NODE_83_length_293100_cov_58.803970, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================== ================== 106210 29 100.0 32 ............................. GTTGAGATCGTCGAGCATGTTCGCGGTGAGGG 106149 29 96.6 32 ............................T GGGCCGTCGGCCGTGTTGGCGAGCTCGAACAG 106088 29 100.0 32 ............................. AAGAAGATCCCCGGGTCCTGGTACGTCGACCT 106027 29 96.6 78 ................G............ CAGGCCGTCAACGCAGACAAACTGGGCGGCTCCTGGTCCCCGGTCGATCGTCGCGCCGGTGCCGGTGCCGGTGATGAG 105920 29 96.6 32 ................G............ ACTGAGAGCCTCCCGAGTCGGCGGACCGTTAT 105859 29 100.0 32 ............................. AGCAGCGGGTGCGGGATGCCCGAGACCAGCCC 105798 29 100.0 32 ............................. CCCGCCCTGACGAAGACCGGGGTGTGGGCGGC 105737 29 100.0 32 ............................. GGTGGCGGCGATCTCGTCGGAGACGCTGTCCC 105676 27 93.1 32 ................--........... GGTTCTTCCCCGAGCCCGAGTAGCCGCGCTCG 105617 29 96.6 31 ............................T ACTGCGAGCCCTGGACCGAGCCGCCCAGCTC 105557 27 93.1 32 ................--........... GGCTTGCCCGAGGCTCTGCCGTCTCCGCGCGT 105498 29 96.6 32 .........................C... GAGTCCTCCGCTAGGCCAAAGACCTCACCTTG 105437 27 86.2 32 ..C.............--.......C... TCCTCCTCGGCGCCAACATGCACGACCTCGAC 105378 28 93.1 0 ..............T..........-... | ========== ====== ====== ====== ============================= ============================================================================== ================== 14 29 96.3 36 CTGGTCCCCGCGCGCGCGGGGATGGTCCC # Left flank : GCACGCGCTCGATACGTACGGACGACGCACTGAACACCGACAGCAACTTGCCGTCAACAGGCGCCGGAAGTCGGGCCAGCCGTTGGGCTGCTGCTTCAGCGGTCCGCATCATCTCGTCAGCCGTGTCGTAGTCGTCGCTCCGGGCGTACGAGGTGGCCGCTGACATCAGAAGGCCGCCCCAGACTCGGATGCCTTCGACGGTCTGTGCGTGGCTCCGCTCCACCTCGTCGCCGGCGTACACGGCCACATGGTTCACCGGGAACGGGCCTACCACGCCGGCGTCGCGCACTAGGTGCTGGGCCCAGCTCTCGACCCGCGTCGGCTCACATCACGATGGACATGGCACTACTCATCGAGGTCTGCATCACAGCGCTAGGCTGAACAGCCTTCCCGCTCGAGGGGCCGGCATGGGCAATTCATCGACTTTGGGCGTTAGGTCGCGATCAGTGGAAGTTGCAGAAAACCGGGCCCCCGCGAGATAAAGCCGCAGGTCGATTGCT # Right flank : GGCGCTCGCGCCAGACCGGCGCCGGCAAGGCAGGCATATTCGACACGTACGCCGACAGCTTCGCGGCCATCTGGAAGTCCGCCGTTCCGCTCCGTCAGGAGGGTTAGCTTTGGCCCGTACCGAGTACTACGACGATCCGACCGCCCCCGCACCGAACAGCATGGTCGTGGCGGCCTCCGCCGTGGTAACCGACGATGAGGGGCGCATCCTGCTCCAGCGTCGTCGGGATAACGAGCTGTGGGCACTGCCCGGCGGGGGCATGGACATGAGCGACTCCCTGCCCGGGTGCGCGGTACGCGAGGTCAAGGAGGAAACCGGCCTTGACGTGGAGATCACCGGGTTGGTGGGCACGTACACCGACCCACGCCACGTCATCGCGTACACGGACGGCGAGGTACGGCGGCAATTCAATGTCTGTTTCACCGCGCGCGTGCTTGGCGGAACACTGACCATCTCCGACGAGTCAACAGAGTTGCGCTTCGTGGCTCCCGAAGCGGTAG # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.24, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27399-26122 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUI010000119.1 Streptomyces buecherae strain AC563_RSS885 NODE_134_length_33584_cov_55.309879, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================== ================== 27398 29 96.6 32 .C........................... GCGGTGACGCCCTCGCCATCGCCGTCGCGGGT 27337 29 100.0 32 ............................. AACCCGCCCCCACCGGCAGCGCACTCTGAGCC 27276 29 100.0 32 ............................. GCGCGACCCCACCAGGTGGTACCCCCTACCGG 27215 29 100.0 32 ............................. GCATCGGCCGGTGCCCGCTCTGCGAAGGCCGC 27154 29 100.0 32 ............................. CCGCGCTTGACCTGCGCGGTTGCGGGTGCGCG 27093 29 100.0 32 ............................. TGCGCCGCGATCCCGCGTGGGCCTCTACGACC 27032 29 100.0 32 ............................. GACCGGGGGCCCGGAGGGCGCCCCCAAGGGGT 26971 29 100.0 32 ............................. GTCCGGGCGACAGCTACGGGAAAGACAACCGT 26910 29 100.0 91 ............................. CCGACCACGACCACTGAGGAGGCGTCACCATGCTGGTCCCCGCGCGCGCGGGGANNNNNNNNNNGGGGCCCGGAGGGCGCCCCCAAGGGGT 26790 29 100.0 72 ............................. GTCCGGGCGACAGCTACGGGAAAGACAACCGTCTGGTCCCCGGTCATGGATCACGGCCGGCGCCGGGTCGAA 26689 27 93.1 32 ........--................... GTCGCGCGGATCAGCACGTGGGGGTCGTGAGG 26630 27 93.1 32 ........--................... GCCGTGCTCACGTCCCCGGCGGCGGTCCAGAC 26571 29 96.6 33 ............................G CCACCGCGCCGTCCACCTCCACGCTGACGACGT 26509 27 93.1 32 ........--................... GGCAAGTCGGTGTTCATCGACGTCGTCATGGG 26450 29 96.6 32 ....C........................ ATCCGGATGTCGCTCAAGAGCGAGAACCCCGA 26389 29 100.0 32 ............................. CGCGACAACCCGCCGGCGCGCGTACCGAGTTC 26328 27 93.1 32 ........--................... CGCGAGGTGACTTCCTCCAGGACGTGGTCCTG 26269 27 89.7 34 ........--...A............... CATCGAAATGACCTCCGCCTCATCCCCTATCTTC 26208 29 79.3 30 T.C.C........A........C..C... CGGAGCTACCCGCCCCCGCCCGGACCGAAC 26149 28 72.4 0 ....C....A.-.A...C....C.CC... | ========== ====== ====== ====== ============================= =========================================================================================== ================== 20 29 95.2 37 CTGGTCCCCGCGCGCGCGGGGATGGTCCC # Left flank : GCCTGAACTGTCGGAGTCCATCACTGGTCAGCATCAGCGGGCTCAGCGTTGGTGTACGAGCCACGCGGCCCGCGACCATCCCGACGGCCGCCACTTGCGCTACACCGCTCACGTGACTTTGCGGTGGCTGGTCACCCCCGCTGAGGACATCGGGCCGAGTGCTGGGCCGTAGGCGGGGTGGAGAGACGGTCCGGGCTGTCACGTCGGGCGCTGTGGTGTTGGGTGCTGGCGCCTGCGGGTGGGGAGTGCGGTTGGCGGGTGGATGGGGGCCGTGGGTGACGCTGACTGTGCCGCCTTGCGAACGGGGGCGGCGTGGCTGGTGAGTTGGCGGTCCAGCATTCCTGTACGTCAGCGTCGCGTGTGCGAGCGCAGCTAGTCTGTGAAGCCTCGCCAGCAAGGGGGGCACTGTGGGCGATCTGCCGAGTTTGAGCGATAGGTCGGAGTTCGCGGAAGTTGCAAAAAACCGGGGTACCGCGCGATAAAGCCGCAGGTCAATTGCT # Right flank : ACCCAAACCCCGAGCAAGCCCCCCACGACCCCCACCCAAGTCTCAATCAAGCCCCGCTCGTGTCGCCCGCCCCGCGTTGTGTGACTCATAGGGCGGCAGCCACCCACCCGGTACCGTGGTCCGAATGACCACCTCGCGGGATCGAGCGGCACGCAGGACCCGGGGAGCCGGGCAGCGCGACGGCGGCGCCCGTGGGGCGCCGCGCACGCTGGCGGAAGAGTTGCGGGGGCGCCCCGACAGCGCGCTCGAACTGTTGCTGCGCGCCCGGCCTGACCTGCTCAATCCGGTGCCGAACGACCTCACCCAGCTCGCCACCAGGGCGGGCACCCGAGCGTCGGTCGTACGGGCCGTCGAGCGGTTGGACCGGTTCGCGCTCCAGGTCGCCGAGGCGCTGGCCGTGGCGCCCGACCCGTGCCCGTACGAGACGCTGCGCGACCTGCTGACCGGCGACCCGGACACGCCCCCGGAGCCGGGCCCCGGCGCGAACGCCGACCCGCACG # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.38, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 32785-32511 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUI010000119.1 Streptomyces buecherae strain AC563_RSS885 NODE_134_length_33584_cov_55.309879, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32784 29 100.0 31 ............................. CCCAGACGCCGAGCGCGGCGCGCAGCTCAGC 32724 29 100.0 32 ............................. GCGGCCGAAGACGCCGTGCAGGACATGCCACT 32663 29 96.6 32 .........................C... GGTCGCCCCTCCCCGTCATATGCCGTGTGCAT 32602 29 89.7 32 ...............T.........C.T. TCGGCGAGGGCCCACGGCCGGACGGTGCGCAC 32541 29 89.7 0 ................G....GG...... | TC [32516] ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.2 32 CTGGTCCCCGCGCGCGCGGGGATGGTCCC # Left flank : GGCCCGGTACTCCTCGGCCGGCACGACCGCCTCACACCGACCGCCGTGCTCGATGACCACCTCGGCGAACCACGCGTCAGGACCGTCGGCCAGACACGAGACCCCACACAGCTCAGCCGGGGCGAACTGGCGGATCGTGTCGGCGAGTAGCGCCCTGACTCTTTTCTCGACCTGCGCTGTAAGCCCACGGTGTCCGGTGATTCCGAGACGCACGAGGACCCCTTCCTGTGAGACTAGAGATTCATGTTCCTAAGCCGCTCTCCGAAAGCGCGGACGGCTCTGAGAGGCGCGGGTTACGAGCGCGATGGTGGCCGTGCTGTGGCTGGTTACCCTCGCCGAGGGCGTCGAGCCGAGCGCTGGACCGCGAGCAGGGCGATAGCCTGGATGGCCTGACCGGTAGGGGATTTATGGGTGGCATGCCGAGCTTGGGCGGTAGGTCGGAGTTCGCGGAAGTTGCAAAAAACCGGGGTGCCGCGCGATAAAACCGCAGGTCAATCGCT # Right flank : GCCCACACCCGACCACACCCTGCCCCCTCACCTCCCCCGCCGCGCCCCCTCGGGCCAGACGACATCCACAGGAATCCCCATCTCCCGTGCCGCCACCACCACATCGGCCGTTCCCCCGCCCTTGCCGCTCGGGGGTGCGCCGTCCCACACCGCGACCAGCCGGTCAGCCCGCTCCAGCAGCACCGCGTTGGCGGCCTCGTAGGCAGCCCGGTTCGCCGTTTCGTGGGGCATGACGAGGGTCTCGTGAGCGGCCAGGCGCAACCTGTCGAAGGTGTCCGCGTAGGCGGGCTTGACCTTCGCTTCGCGGTAGTCCCGCGACGGGATGACGACGACCAGGCGCCCGCCCGCCTCCAACACGGCCTCGGCGAACAGCGAGTCCGCTCCGGCGGCGATGCAGGACACGCCCGTCAGCTCGTCGTCGCGATGTTGGGTGATGACATGTCGTAGGGCCTCGCGTACGAGGGCAGTGGTGGCGTCGGTCAGGTCGATGTGTCCGGTGA # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 237682-238320 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUI010000128.1 Streptomyces buecherae strain AC563_RSS885 NODE_145_length_303346_cov_57.538231, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 237682 29 100.0 32 ............................. GTAGGCAATCCCGGGTGGCGGCGTGCCTCTCG 237743 29 100.0 32 ............................. CCCGAAACCCGCCCGTGGAGGCACTTCGTGAC 237804 29 93.1 32 ........T................C... TCGACCAGCGGGCCGAGGAGATCGAGAGGAAG 237865 29 100.0 32 ............................. CAGGCCGTCGAGCTCGACATCGACATCGCGGC 237926 29 96.6 32 .....................G....... TGCCACGGCTGCAAGGACGGCCCCAGCTACGC 237987 29 93.1 32 .....................G...C... CAGAACCGGTCGTCGTCGTACTCGACGTCCCA 238048 29 89.7 32 ........T............G...C... GAGAAGGAGGCCGCCCTCGCCGAGCGCGTCGA 238109 29 96.6 32 .....................G....... GTCGTACCCCTGTACACCCGGCTGGGCCCGCG 238170 29 96.6 32 .....................G....... GACGTGAAGCCGCTGTACCGGGTGGGCGGTGG 238231 29 93.1 32 ....................AG....... TGGGCGATCCGGTGCTGCCACACCGCGTTCTG 238292 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 96.3 32 CTGGTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : CCGCGACTGGCGCGCGGGCGCCATCCTGGGCGCCACGGCGGCCGGCCTGCTGCCCTGGTTCGCCTACCAGGACCGCACGATCTTCTCCTTCTACGCGGTCGTCTTCATCCCGTTCCTGTGCCTCGCGGTCGCCATGATGCTCGGCGCCATCGTCGGCCCCCACGCCGCCACCGAACGCCGCCGCACCGTCGGCGCGGTCGGCGCCGGCGCGCTGGTCCTGCTGATCGTGTGGAACTTCATCTACTTCTTCCCGATCTACACCGGCCAGGCCATCCCGCTGGAGGCGTGGCGGGATCGGATGTGGCTGGATACGTGGATCTAGCCGGGGTCGGCTGATGGGGGCCGCTGGCGGGGGCCGCCGCCGAGGCCCGCTGGCGCTGGGCGGGCGCGGGGGCGATGGGAGGACTATGCCGGCTTTTCTGGGATTGGCCGATAGGTCGCGATCGGCGAAAGTTGCAAGAAACCGGGCTGTCGCCGGATAAACCCGCAGGTCAATTGCT # Right flank : CATCGACGCTGGCCTCAACTATGGCGGAGCAGCAGCGACGACAGCCGTCGCCCCGACAGGGTGTCAGTGGGATGGTCTACCGTCCGACGCATGGCCACCGATGCGCTCCCGATCAAGCCCGGCGACGTCCGCACGCGCGAGGAGATCAAACCCGTGCTAGGCGGCAGCCTGTACGGCGGCATCGTCCCATCCGACGAGAAGGCCAATGTGCTGCTGTTCTCGGACGCCGAGGCCGGAGCCAAGTACGGCTACTACGACGGCTGGTTGCAGGAAGAAGACGAGCTCGGCCCCATCTTCGAGTACACCGGCGCCGGCGGCGGCGATCAGGTCTTCGAGGGTCAGCGGGGCCAAAAGAACGCCGCGATCCTCAACCACGCCGACAAGGGGCGCACGCTGCATCTCTTCGTCGCGGTGGGCACAGTGTCCGGCAGAAAGACCAAGCGACACCGCTACGTCGGGGCGTTCGAGCTCGACGCGGCCGAACCGTACGTGATGCGGCA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : CTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2389-2055 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUI010000098.1 Streptomyces buecherae strain AC563_RSS885 NODE_108_length_29784_cov_57.480427, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2388 29 100.0 32 ............................. GAATCCGGCGTGATCCCGACGTACCGCAAGCG 2327 29 100.0 32 ............................. GGGAAGACGACGCTCAGCGGCGGCATCGCGGT 2266 29 100.0 32 ............................. CGAGGAATCTGAACGGGTTAAAAAACTGGGTT 2205 29 100.0 32 ............................. GCCTACCTGCTCAACCCCGCTGACCTGGAGGC 2144 29 96.6 32 ..............C.............. CAAGCCGGACGGAAGAATGTCATCGGTGCGTG 2083 29 82.8 0 T.............A......T...C.T. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.6 32 CTGGTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : TGAGCCGTCGGAGTCCATCACGGGCCAGCATCACCGGGCCCAGCGCTGGTGTACGAGCCACGCGGCCCGTGACCACCCCGACGGCCGCCACGTTCGCTACGCGGCGACGGTCACCTTGCGGTGGCTGGTCACCCCGGCTGAGGACATCGGGCCGAGTGCTGGCCCGTAGGCGGGGTGAGCAGGCGGTGCGGGCTGTGGCGTTGGGGCGGTGGTGTGGGATGCCGGCGCCTGCGGGTGGGGGGCGCTGGGTGGGTGCGGGGGTGCGGGGGTGGCCGTGGGTGACGCTGGCTGTGCCGTCTTGTGAACGGGGTGGCACAGTTGGCGAGTTGGCGGTCCAGCGTTCTTGTCCTTGAGCCTCAGGGTGCGAACGCAGATAGGCTGTGAAGCCTGGCCAGCAAGGGGGCGTTGTGGGCGATCTGCCGAGTTTGAGCGATAGGTCGGAGTTCGCGGAAGTTGCAAAAAACCGGGGTGTCGCGCGGTAAACCCGCAGGTCAATTGCT # Right flank : TGGCGCTTGTCGGGGTCAGTGTGCCCGCCGCCCTGAACTCGGCGCGCTTCCCTGTCCGTCGCCATGACCAAGGCGGGCGCCCAACGCCGCCCCACAACCCTGCTTCGCGGCGAACCTTCCGAGCCGTCGCCGCACTTCAGAGGCGCACGGCGTCGTTCTGCCGGCGGTGAACACATGCCCGGTTGAGCTCGGCGGTCATTACCGTCCAGACGTATGACGACGATAACAACGCGCACGGTCGAGTATCCGGCCGATGGTCTGACGATGGTGGGGCGCCTTGCGATTCCGGCCGGCGTGGGTCGTCGGCCTGCGGTTCTGGTGGGGCCCGAGGGGACGGGGTTGAACGACTTTCAGCGCCGACGGGCGGACGCCTTGGCCGAACTGGGTTATGTGGCGCTGGCCTTCGACTTCAACGGCGGGCGTTGGTTCAGTGACCCCGAGGAGATGTTGGCCTATGTCATGCCTCTGCTTGCCGACCCCGACCGGATGCGGGGCATCGG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //