Array 1 86740-85796 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016463.1 Bosea sp. RAC05 plasmid pBSY19_1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 86739 28 100.0 33 ............................ TGCTACGGACATAGGCCTGGATCGCCTCTTCGG 86678 28 100.0 33 ............................ TTCCTGGACCCCCTCCTGGTGGCTCTGCCACTC 86617 28 100.0 33 ............................ TCCTACACAGATCGCCCAGGTCCTTGCCCTTCT 86556 28 100.0 33 ............................ CTCAGGCGCCACCGGACGGGCCAGCGCGATAGC 86495 28 100.0 33 ............................ CACTGGCCTGGAGATGCTCGCCCCGGGCCGGAA 86434 28 100.0 33 ............................ GCCTCGCACGGGTGTCCGCGGTGTCATCATGAC 86373 28 100.0 33 ............................ GGTATGACGCCACAGATTTGGCGTTCTGCGACG 86312 28 100.0 33 ............................ GCTGATGAACATCAAGCAGCTCGGCGCCGACGT 86251 28 100.0 33 ............................ CCTGGGCCGTGTCTCAGCTCAGCACCCGTCCGT 86190 28 100.0 33 ............................ CGCATGCCAAAGATCCTTGGCGAGATCGCGGAC 86129 28 100.0 33 ............................ CCGGCCAGCGACGGTTCTGACCGAAGGTCAGAT 86068 28 100.0 33 ............................ TCGCCCGCTGCACGGTGGTTTTGCCAACTCCCG 86007 28 100.0 33 ............................ CGTCATTCGGCTACGGCATCAGCAGAGTGCGTA 85946 28 96.4 32 ..........T................. CTGCACCGACCTCGAATGGGTCGCCAGCCGAT 85886 28 92.9 33 .......T..T................. TGCTTACAAGAGCGCCGACGATTTGCCTCTGGC A [85884] 85824 28 82.1 0 .............AA........T.T.T | C [85814] ========== ====== ====== ====== ============================ ================================= ================== 16 28 98.2 33 GGCTCCCCCGCACGCGCGGGGATGGACC # Left flank : ACATTGTCCATCGAGAGAACGGCTCGCCGCATGGTAGGCGAAGCACTTCGCAAACAATCGGTCATCGCGTGTATGATCGACCGCATCAAGGCGCTCTTTGCGCCTGACGAGGAGGCTGCGCCGTCATGACCATGACGGTTTTCATTACCCGAGATGTTACCGACCGGTTCCGCGGGTTTCTCGCATCCATCATGCCTGAGGTGTCGCCTGGGGTGTTCACGTCGCCAGCCTTGCCTAAAGGTGTCCGAGACCGTGTCTGGAATGTGCTATCGGACTGGTGGTCACAAGTTCCCGGCGGCTCGATCCTGATGATTTCCAAAGACGACAGCTCTCCTGGCAGGCTCAGAATCCTGTCGCTAGGGACGCCGGTGCGTGATGTCGTCGATCTTGACGGAGTGCTGGTCGGCAAGCGCCGAAGACCGAATGCAGCAGCTCCATAAAACCATTTCTTGCTACCCGCTTTTTGAAATCGTAATCTTTTCATCGACTTCTACCTAAGA # Right flank : ACCTATCGTTGAGCCGTTATCGGATCTGCCGCGGCATCAGCCTCTATCAGCTGCGCCAGCTGGTCTCTCGCGCTCGCGTCCTGAGCCTGGGTAACGGCATCGATCAGCTCGTCCGGGATGTCGGCGCCAGCCTCGCGCATCGCCTGCAGCAGATCGTGCGCGACCAGGTGTCGGCAGATCTGCGGGAATGGGAAGTCGATGAGTTTCTCCACGAGCTGAAGAAGCGCTCGATCCGGGACTGCCATGGCCGCGCTCCAATGCCGCTACGCGACGTCGACGGCTGGCCCGACCGCGGTCGCCAGCTGACTGGCGTCGATGGCCCGAATGGCTGCCACGACGTCTGCGATCGCGCGATTATAGGCCTCGTCGTCAGAGATCCCTGTAGCATCGGTGAGCAGCTCGGCAAGCGCAGCTTCGATGCATGCTTGGCGCATTGTCTCGGTGCTGACGGCCGCGGCAGCGATTTCGGTGTTGTGCTGGTCGACGACGGCCTGGGCCCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCACGCGCGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 96578-95511 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016463.1 Bosea sp. RAC05 plasmid pBSY19_1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 96577 28 100.0 33 ............................ GCAGATATCACCAGTGCCTGCCGTTCCGGTAAC 96516 28 100.0 33 ............................ CGATATCTGTGCCGTCATGGCGGCTCAGGGTGA 96455 28 100.0 32 ............................ CGCATCGAGGACGTAGTACAGGACGTCCTTCA 96395 28 100.0 33 ............................ TCCTGAGTGACGGTCGCCAGACCGTGCTGCCTC 96334 28 100.0 33 ............................ GTCATAGCATACGACCGTCTTCAGACGTGGGCG 96273 28 100.0 33 ............................ TGCGAGCCACCCTGGCGCGGCAGGCTCCGTCCT 96212 28 100.0 33 ............................ TCGATCTCAAATGATCCCACTCGATTTTCGGAC 96151 28 100.0 33 ............................ GGCCACGGAGCGGGAGGACGAGCTCGATCGAAA 96090 28 100.0 33 ............................ CGGGCGTACAAGGCGGCGCCGAGAAGCATGAGT 96029 28 100.0 33 ............................ CTGACCGGCCCGGCGGTGCTCCTCGACAATCCG 95968 28 100.0 33 ............................ CGCTGGAGGACGAAGCTCGTATCGAGGTCTTCA 95907 28 100.0 33 ............................ GCAGCCCCGCCGTCGCGACCGCCCCAAGAGGTC 95846 28 100.0 33 ............................ TTCGCGACCGGAAGACGTCGCCTCGCGCCGCTC 95785 28 100.0 33 ............................ GTACATCATCACCGATCCTTCGGTCGAAGAGCG 95724 28 96.4 33 .G.......................... GCTGTGACCTCCAACATGATGCGCGAGGCTATC 95663 28 92.9 33 .G.......................G.. GAAGGGTCGCATCACTGACGATCAGGCGCTCTT A [95659] 95601 28 96.4 33 .............C.............. CATCTCCATGACCGCCGTCCCGCTGACGGGTCG 95540 28 82.1 0 AG............G........T...T | TA [95514] ========== ====== ====== ====== ============================ ================================= ================== 18 28 98.2 33 GTCTCCCCCGCACGCGCGGGGATGGACC # Left flank : CGTGTTCTTCGAGGCTCTCATCACCGGAAACGCGGAGCAGCTCAACGAGGTCGCGTGGACCCGATTCCAGCATACAGCCGAGTTCGCGCAGGGCGCCTGGACGCGGGATGCCTTCATCGCCTTGAAGCGCGAGTACGCGGCCTCCGACTATGCCATCGGGCTGGGCCTCAACGAATACATCGGCTGGTTCATGAAGTCGGCCGAGGCGCTGGATCCCTCAGGAGCGCTGAAGCCCGAAGTCGTGGCCCAGGCGGAATCGATGCTCGACGCCTGGTCGGAGACCGACACGGAAGGCCAGAAATTCTGGCTCAGCCGCAATCTGGAGGTCCACCCCCGTCACCAGGCACTCTATGGCCAGCTCGTCGATGACCGGCTGGCGGCCAAGGCCCCAGGCATGGGGCGCTGAGAGGCCTAGATGTGCCTTGGCAGGCCCGCTGATCACGAGCTAGATTCGGCTGCTATTTGAAAAGTCGATTCTTCACCGAGGTTTAGCACCTAGA # Right flank : CACATCGATACGGAATAAGGATGACGCGCGCCCGTAATTGGCGATCATAAAGGATCGTGTTTTCGATTCGGGATAGAGATGATAGCCTCATGGACAAGCGCCGACGGTCCTTGGGCGAAGCTCTCTCATGGTCCCGACGGCGAGATCGAAGCCTGGCATAGCCTCGTCGATCACTCAGCGGATGTAGCTGCATGCTTCGAAGCAATCCTGGCGCTACCGATCCCGTCTCGGCGCATCGCGAAACTGGCTGGGCGTGACGAGCTCCCAGAATGCTGGATTGATCGGCTGTGTGCACACGTCGCCTTGCATGATTTCGGCAAGGCGAACTCGGGTTTTCAGGCCAGAAGCAGGGTTGGTGCACCTCTGATCGGGCATTGCCGCGAAGCCTGGGTCGCTGTTCAGGATGAAGACATCCGCGCTAGGCTTGCGTCCGTTCTGCCATGGGCGGAGATGGAGCAATGGGGCCACCTGGATCCTGTTCAGCTCGTCGTCCTTGCCCA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCCCCGCACGCGCGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 264278-264732 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016463.1 Bosea sp. RAC05 plasmid pBSY19_1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 264278 28 100.0 33 ............................ GGGCCCATCTCGCTGTACGGTGAGCCACCGGAT 264339 28 100.0 33 ............................ GCTGTCGCGGCCGGATCCGCAAAGCCGAAGGCA 264400 28 92.9 33 .........TC................. GTGGATCCCGAGCTGCTGGACCCGCTCCCATCC 264461 28 100.0 33 ............................ GCTGCCGTGGACGGCGGCTGCTGTCAGTGTTGC 264522 28 96.4 33 ..........................T. TGGGCCGCTGGTCTCTAGCCAAGTGTTCATGCT 264583 28 85.7 33 .........T.A.A...........G.. TGATTATCGACGGATCAAGGTGGTCCTGGACGG 264644 28 100.0 33 ............................ ACGCGCTGCCATCTGAGTGCCCCAGCGGCAATT 264705 28 75.0 0 ..............CA......TATT.A | ========== ====== ====== ====== ============================ ================================= ================== 8 28 93.8 33 GTCACGCCCCTGCGGGCGTGGGAGAACC # Left flank : TGGTTCCGGAATGACGGACGATATATCCCGAAGATGAGCCCGCATCGTCCCACTGTCACACAGAATCCGACGATCGAGGGCGCCGTGGCAATCCTATGGCAGTGCCGCGGGAACGCGGATAAAGCGCTGATGCTGGCCAGACGTATCTTCTGCGTAGGTGGCCGTCGCAACAACGGATATGGCCGCGTCGAACGGTGGGATGTGCTCCCGTGTTCAGCCAGTTCGGACAAGGCTGGCTGGTTTGGTCAGGGAGGAGAGGTCCTGCGGAATCTTCCTCGGTCCTTCATCTCCGGTCGGCACCCACCAGGCAGCATGCCAGACATAGGGCGAGTCGAGCCGAGCTACGGGGGCGCTGAAGGCCGCATCGAAATCGTCAAGCCGACCCTTACCGCCATGCTCGGATCGTCCATGACCGCAAGGGCCATTCTCGCCTTCTGAGACTTGCCCGAACCAGGACCGCTGTTTGAAAAACGAATATCCTCAATAGGTTGATTTCTAGA # Right flank : AGATAACGAAAATCGGGGACGGGCCGCCAGGATCCCTGCTCTCACAAACGATAGCGTTTGCAGTCCAAACGAGTCACAGCGACATTCCTTGAAGAAGGGATGTCGCTGATGAATCGTTTGGAATACATGATCGAGACAGACATCAAATGAGCGCCCGATCCGCACTCCGTGCGCTCAAGCGCGCTGTGTATCGAGCAATCGGCTACGACGATCGTAACTGGCTGCGCGTGCGTCAGATCGAGGCGTTCGAACGCTTCATCGCATCGAGCGACATCAAGCGAGCCGTCGAGATCTCACCAGGCTGGAGCGCGCGCTGGTCCGATCTTCTCGCGGGACGATACGAGGCCCTGCATTTCCCCGAGTTCGACATCTGCAAGGATCGTCGCGATGCTCGGGCAGATCTCGTCATTGCCGACCAGGTGCTCGAACATGTGCCGCGGCCTCTCGATGCGCTTCGCAACATCCATGCGATGCTGGAGCCTGGCGGGCATGCGCTGATC # Questionable array : NO Score: 2.93 # Score Detail : 1:0, 2:0, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCCCCTGCGGGCGTGGGAGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.90,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //