Array 1 62031-62449 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRHM01000037.1 Clostridioides difficile strain SA10-050 KW94_Contig_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 62031 29 100.0 36 ............................. TAAAGTATTCGGGTGTTGATAGCTCCATGGCTAACA 62096 29 100.0 36 ............................. CGTATCATACTTATTGACTGTTCATCTAATCCTTTT 62161 29 100.0 36 ............................. GGGGTTGCCCTCGTGGGTGTGAGTTTTGCATTGTTC 62226 29 100.0 36 ............................. TGGCATAAATTTAAGTTTGATTTTTTGAGATTGAAA 62291 29 100.0 37 ............................. AGAGCTACGCAATTCTTAAAATCTTCTATATCATAGA 62357 29 100.0 36 ............................. ATTTTTCAAACAGCTTTTGGAGCTGTATCTTCGATT 62422 28 89.7 0 ....................-..T....A | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 98.5 36 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : TTAGGTCTAATTCATTTTTTAATATTCCTTGTAATTTTAATTTGCCTTGTTTTAGCTTTTTTCTTTTAATAAACTTATTAATTCATCAAGTGCTGATAATGTTCTCTTTGATTTTTTATTATATCTCTTCTGTTTTTAATTTTTTTCTTATGAAGGCTGACTTAGTATCCATAAGAGCACCATCCTTTGAGTTAGTTTGAATTAATTACTTAATTATATTTTATAACAAGTGAAAAAAATTTTCAGAGTTTATTAAAAAAATGTTTATTTTTATTAAATTATAAATTGGTACAAATATTCAAAAATAATCTATTTATGATATAATAAAAATATAAGAGTTTTGCAGCGTGCGATTTTTCTATTTAAGTATAGTTTAACAGTTGAAACATAAGGCATTGAGAGTGTATGATAAGTGTTATCAATTGCACGACTATCCGCGCACTGCAAATTTAAGAGAGTTGTATATATGTAAGTATTAGAAATGCTAAGTTTATTTTGGG # Right flank : ATTAAAAATACTAAAAACACTTACTTAAATAGTAGGTGTTTTTCAAATTAAAAGGATGTAATAATATTATAAAAAACAATATATAGGAAAAACATGTAAATACATATGTTATAATATTTTTAGCAAGAAGATGGAATCTACAATTTATAGAGTGGAGTTCATGTATCAAAAAATTATCCTCCTAACATTGATAAGGGAGGTGAATATAGTAAGTACTTACTCAAAAGGTAGGTATTTTTTTATACAAAAAATAAAAGTAAGTGATAATTTGGGAATAGACATACACCTAAAAAATGGAAAAGAAAAAATAGATTTCCATTTTCCAGTTAATCCACAAGATTCTTTATCTATTAAAAAAGAAAAAAGATTTGAAACTGTTGATATAGTGAATTTAGGTGAATTTGACATTAAAAAATAAGGGGAGAAGATAAGAGAAGTCTCATTCAAGACAATCTTACTTAACTTATATGATGCTTCTTATTGCAGATATAGTGAGTTAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 48441-49705 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRHM01000034.1 Clostridioides difficile strain SA10-050 KW94_Contig_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 48441 29 96.6 36 A............................ TCGCCTTCACGCACATGGTCATTAATTGCATTTTTT 48506 29 96.6 36 A............................ TTGTTTTTTATCAGCAGGAAGATTTGCTATAACATC 48571 29 96.6 37 A............................ GCGGATGAAAAAAGAGTTATAGAATTGATGTATTTTT 48637 29 96.6 36 A............................ CCCCCTTCCTTTATAAATTTGCATTAAAAAAGCACC 48702 29 96.6 36 A............................ CTCCTTTTTCACTTAGTTTTAGTCAGTATATAGTGG 48767 29 96.6 36 A............................ GTCGTTAGCCTCCTTTTTCACACTTTCAATATCAAT 48832 29 96.6 36 A............................ TGTTATATCTTCAATATCTTTAGATAGTTCTACATA 48897 29 96.6 35 A............................ TTATTATGTTCTCTAATATAATCTATGATTTCTAA 48961 29 100.0 36 ............................. ATCTATGAGTTGTAGAGAAGTTGAAGAATTTTATGA 49026 29 100.0 36 ............................. CTGACCTACTTCGTCCACCGCTCCAGATTCAAGTTC 49091 29 100.0 35 ............................. TAGTAAATACATTTCTTTGAGTGGTGTCTCCTAAC 49155 29 100.0 36 ............................. AAATTCCTTTAGTAGCTGACTTGTCATTTACATATC 49220 29 100.0 37 ............................. ATTGATATACCCCAACAAATCACGCCTTGTAAGACTG 49286 29 100.0 36 ............................. TTACACTTAAAAGCATTAATGACACGAGGTAGAAGT 49351 29 100.0 37 ............................. TTATAATCTTTTATACCAAATTTACTTGCTAGTATCC 49417 29 100.0 36 ............................. TTTAATAAATGCCCTCCAGTTAACGCCATTTCTATT 49482 29 100.0 37 ............................. AAAGAAATTATGGCTAGCTTTAGCTTTGAAACATACG 49548 29 100.0 36 ............................. TCTTTTGCTCCGTCTGTTTTTAAAGTCAATGGAATT 49613 29 100.0 36 ............................. AAATGTTTTAATAAATCACTTAGATAAAAAGATGCA 49678 28 82.8 0 ................A...GC.-....A | ========== ====== ====== ====== ============================= ===================================== ================== 20 29 97.8 36 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : TTATTATTGTTTATAGTTGATTTTATTTCAATTAAATGTTTTTCAGCATCTTTTTTCTTTTCATAACTTCCATAACTTTTTTGTTTCTTTTTCCCAGTTTCTTCTTCCACATACTCCACATATACATGAAATTTTTCCCCTCTTTTTCTTATGAAGGCTGACTTAATATCCATAAGAGCACCATCCTTTGAGTTAATTTGAATTAATTACTTAATTATATTTTATAACAAGTGAAAAAATTTTTCAGAGTTTATTAAAAAATATTTATTTTTATTAAATTATAAATTGTTACAAATATTCAAAAATAATCTATTTATGATATAATAAAAATATAAGAGTTTTGCAGCGTGCGATTTTTCTGTTTAAGTATGCTTTAACAGTTGAAATACAAGGCATTGAGAACATATGATAAGTGTTATCAATTGCACTACTAGCCGCTCACTGCAAATTTAAGAGAGTTTTATGTGTGTAAGTATTGAAAATACTTAGTTTATTTTGGG # Right flank : ATTAAAAATACTAAAAACACTTACTTAAATAGTAGGTGTTTTTTTATTGAAAGGATGTGATGATAATGAAAAAAGTAATATATGGGAAAAATATGTAAATATATATGTTATAATATTTTTAGCAAGAAGATGTAATCTACAATTTATAGAGTGGAGTTCATACAAAAGATTATCCTCCCAACGTATAGAAGGGAGGTGTGTATGTATGGATAATTTTTTGATTGGCGTATTAGCTAGCTTAACAGCTACTCTAATAGGCTACATAGTTTGTATATTTATCAAAAAAGTAAAAAGCCACTCTGTGCAAGAGAGTGACTTAGACGTTGAGCTTAACTTTTCGTTTAAGTTCAAAAAGAAACACTAATTTACGAACTTCACTCTAATGCAAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAATAAAAAAATTTTAACATTAATTATTGTCAGTTTTGACATTAATTAATGTTAATTATTATAAACAATGATAATGA # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 51450-52266 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRHM01000034.1 Clostridioides difficile strain SA10-050 KW94_Contig_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 51450 29 100.0 37 ............................. TTGTTAAGTTCAACATCACACCATCTAACTCCTACAG 51516 29 100.0 36 ............................. GTTGATGTCTCCTTAACACCTTCTACGGTTTCTAAA 51581 29 100.0 36 ............................. TTGTTTCCTAGGGCATTTTTATTCCCAGGTCGCCCC 51646 29 100.0 37 ............................. CAGCAAAACAATTTACCGCAGATGCAGAAACTACAAA 51712 29 100.0 37 ............................. ATTAAAGCTTTACAAATAGAAAACAAAACTTCCTTTG 51778 29 100.0 36 ............................. ATTTTTATCTGTTAATTGTTTTAACTCTAAAGTATC 51843 29 100.0 36 ............................. GTTACATATATTCTCTCTGAATTTACTGCATATAGA 51908 29 100.0 36 ............................. AATGAAATTGACATACCAAACACCTCACTTTTCTAT 51973 29 100.0 36 ............................. AGCTTTATCAGTGTCTAATATTTTGCAGTGTCTATT 52038 29 100.0 37 ............................. ACATGATTTTTGGGCAAACTCTTGGGAAGATAAGTGG 52104 29 100.0 37 ............................. TTGCTAAAAGATTAAGAGATGCTAGAGAAGAACTCTT 52170 29 100.0 37 ............................. ATTGATTCTTTTGGAAATGAAGGTGATGTCATTCATT 52236 29 86.2 0 ...............A....A..T....A | GA [52255] ========== ====== ====== ====== ============================= ===================================== ================== 13 29 98.9 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : TTTAGCAAAATTCGAAATAATGTAGATGAAGTTGAAAATATATATTTTCGAGAAGAAGAGGTTGAAACTAAAGAAGAAGAAAAGCTACGACAAGAAAAAAACAATGATAATAATTATATTCGAAACAGTGGAATTGACCCACTAGATAGAATAAAGAAACTAAAAGAGTTGTTAGACTCAGGTGCAATTACACAGGAAGAATATAATAAAAAGAAAAAGGCATTATTAGAATAGATAATATAGTAAGCACTTACAAATATGTAGGTGCTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTGTGATAAAGTAGGCTTTAACAGTTGCAATGTAAGGTGTTGAGGGAATGTGATAAGCGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAAAGTTATATATGTGTAAGTATTGTAAATGCTAAGTTTATTTTGGG # Right flank : AAGTTACAATGAGTAGAAGAAGATTTCTATTTATCGTAACTTTTTTGTTGCAAATTTAAAATTATAATAGATTATAAAAATTATTATAAAAAGATAGTTTTATAAAAAAATATAATAAAAAACTCGATTAATAATATATATTAATGGAAAAAAATTCCAAATGTCTACAAAATTCGATTTTTTTATTACAATTACGCTTTTTTTATTGCATTAACAAATCAAAAGTATTATTATGTAAGTAAGATAATTATCTAAGACAATTCTGAATAATCTAAAAATATTTCGGGGGATTTAAAGGGTGTAATTACATAATTTTTATTGGGAGTTTTTAACTAAAAATAAGAACGTAAGTTCTTGTAACAGGGGGATGGTATATGTGCAGTATTCAAAAAGATTAATATTAGAACTAGAGAATTTATTTAAAAACTTTAAAGAAGTTGAGGAGGAAGAATTTGAGAAGTATAAAAAGATGTTGAAAGAAGAAAAAGAAAAAAGAGAGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 78784-79144 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRHM01000034.1 Clostridioides difficile strain SA10-050 KW94_Contig_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 78784 29 96.6 36 ...............A............. GAACTATGAAATGTCATGTTGTTAGCAAAAATAAGG 78849 29 100.0 38 ............................. GGCATAATAGTCATGAGTGATGTAGATAAACATGTTTT 78916 29 93.1 38 .............A..............T GGAGGAAGAAATTTACCTATTAAATCTCTAGTTTTCCA 78983 29 96.6 39 ...............A............. AGAGTAACTATTGATGAAGCCTTATTTCCAGCAACAAAG 79051 29 100.0 37 ............................. TATTTTATTATTGGATATTTACACTTAATAGCAACCT 79117 28 89.7 0 ....................-..T....A | ========== ====== ====== ====== ============================= ======================================= ================== 6 29 96.0 38 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : AAGATAAAAATTTAGCAATAAGTAAAAATGGTAAATTTGAAGCAGATATTAATGACAAACTAAAAGAATATAGTGATAATCTTATAAAAGTTAGTTATGGAGAAGAAAAAGATGAGTTGATTTTTCAATTTAACTTAACTGGTAATCTAACTCAAAAGATGATGATTACAAAAGCATATTCTGATGCTAAGAGTAGTATAGAAAGAGTCATAAAAGATTATCCAGACAAAATAAACAATTATAAATTTAAATTTTTCTCAGATGTACAAGATACTTATGGGAAAGAATCCAATCAAGCTGTTTTAACTTTTGAGTATTCAAAAGATACTATAGATAAAATTGTTTGGGATAAAATAACAATAGAAGATTTTTCAAGTTTAGCTTATAATGTTTGGGAAAGTACAGCACTAGAGTAATTTAAAAAATGCCGCTAGTCACTCACTGTAATTTTAATGGGATTATATGCTTTAAAGCATTGAAGATGTTCAACTTATTTTGAG # Right flank : ATTAAAAATATCAAAGAACACTTACTTAAATAGTAGGTGTTTTTTTAATGAAAGGATGTGATTATAATGAAAAAAGCAATATATGGGAAAAATATGTAAATATATATGTTATAATATTTCTAGCAAGAAGATGTAATCTGCAATTTATAGAGTGGAGTTCATACAAAAGATTATCCTCCCAACGTATAGAAGGGAGGTGTGTATGTATGGATAATTTTTTACAAGGTGTACTAGCAAGTATTTTAGCTAGCTATATAGTTTACTTAATAAGTAAGTTATTTAGAAAACGTAAAAAACCACTCAAAGCGGGCACTAAGAGTGGTTGGGAGTTTGATTTTAAAATCAAATTCCATAAATTCAAATAACTTTCAGTTATAGAACTCCACTCTACACCAAATAGATTGTAGTTCTTCTTGCTTTTATTATATCACAAAATAGATAAAATATGTAAATAAAACACTTGAATATTATGTTTGCTTCAAGTACTTTATTGTATGCAA # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : GTTTTATATTAACTAAGTGGTATGTAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 169498-168224 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRHM01000052.1 Clostridioides difficile strain SA10-050 KW94_Contig_52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 169497 29 100.0 36 ............................. CTTTTAATTTGCTCGTATCCAACTAGATATTTTTTG 169432 29 100.0 37 ............................. GCTATACATATACTCATTCCGTATTTATAAAATGTTT 169366 29 100.0 37 ............................. TCTGTAAAATAGAGTTTTATACCATTTATTTTTTTAT 169300 29 100.0 35 ............................. GCTGATTATTATGAAAGGTATAATAAAGCTCAAGA 169236 29 100.0 36 ............................. TATTCATTCTTCCCAGACCAAGGCAGAACTGACTTA 169171 29 100.0 36 ............................. ATTACTAATATCGCACTAGCTAAGACATTCATTTTC 169106 29 100.0 36 ............................. CTAATAATCGATTGAGTTAATTTAGTGTGTAGTTCA 169041 29 100.0 37 ............................. GCGACAGTTCTTGATTTTACATCAAGTGGATTTTCAT 168975 29 100.0 36 ............................. TCACTATAGCATGAATTAAAACTGCTATTTTTCCTA 168910 29 100.0 36 ............................. TGGCGTGTTAGAGTTCTTGGAGAATTCCCTAAGGGA 168845 29 100.0 37 ............................. TTCTTTGAATTTTCCTGGTAATTGACTAACAGTATTG 168779 29 100.0 37 ............................. TTGTCTACAACATAATGTATAGAAATTGCATCATAAC 168713 29 100.0 37 ............................. TATACTTATGTTGAATTTTGGACAGATAAAGTATTAA 168647 29 100.0 37 ............................. TGTAGATATGGAACTAAAGAAAACTTTTCCTGATGGG 168581 29 100.0 38 ............................. ACAATCAGACGATACTACTGAAAGCGTAAAAATCACCT 168514 29 100.0 36 ............................. ACGAAAATAAAAGAGCTTACTAAAAACGCTATTATG 168449 29 100.0 37 ............................. GGCTATTATGTTGCTAAATGTGATGAAAATGGTGAAA 168383 29 100.0 36 ............................. CTAACTAGGCAATCACTAAAAGGAGCTGGTGTAAAT 168318 29 100.0 37 ............................. ATAATTCTTCATGAGATATTTAGTTTTTCACCCAATT 168252 29 93.1 0 ...............G.......G..... | ========== ====== ====== ====== ============================= ====================================== ================== 20 29 99.7 37 GTTTAAATTACACTAAGTTAGTTATAAAT # Left flank : GAGTATGGAATAAATCTGCTAATAATGATATGTTAAATAATGATACTATTAGTGTTGTGCCTGAATGTCTTTTAGAAGAGTATAAGTTCTATATTGATAAAAAAATGTATTTAGAAGCGAGTTCATTATTTGTAAATGTATCTGTAAAAAGATACAATTATAATAAAAAGATGTTTTATGAATGTGGAGATATAGTCGTTACAAGTTATAGTTATAATGATAAACTAGGTCTAATATTTGATTGTTAAGAGAATTATAGTATAACTAATTAAAATATTTTATTGAGAATTTGTTATAATTTATATCGACTACAAGTTTTATATGTTACAGTAGAATAATTTTGCAGTGAGCGAAAAATATGTGTAAATGGCTGTGAGCTAGTGATGGCAAGGTTTATAACTGAATTTTTGTTTTTAGCTAAAAACACTACTGGTAGCTCACTGCAAATTACCTATTATAATAACACTACAAGTGTTGGAATCACTATAGTTTTATTTGGG # Right flank : TTACTTATTCATTAAAAAACTTAACTAAGAATTTGATTTATATTATTGAATTAGCAAGAGTCTTGAAAAGTAGAAAATTATACCCCAATAATACCCCAACTACAAAAAAAAACAATAAAAAATAACCAAAAAAATTGCTTCAATATCATGACCAAATAGCTATATACCTACATTTACAAAAACCAACAAAACAATCAAATAACCACTTATAGACTCCCCTCGTCTCCACCATTAAAATCCAAGAAAAATATTAGCACTTTGCTAATATTTTTTTGTGAAAACTAATCATAACCTATATAATTAACTTATAAAACACACATGAAGAGGTAAAACTATATGGCTAAAATTGATAATATGATGTCCATATTATGGATGCTAAACTCAGATAAAAAAATAACCGCAAAACAAATATCTGAAAAACTAGAAATAAACATAAGAACTGTTTACAGACACATTGATGCATTATCTGCTAGTGGAATACCTATAATTTCAGATACAGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATTACACTAAGTTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //