Array 1 422254-424295 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZDR010000001.1 Salmonella enterica isolate 1921_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 422254 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 422315 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 422376 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 422437 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 422498 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 422559 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 422620 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 422681 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 422742 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 422803 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 422864 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 422925 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 422986 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 423047 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 423108 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 423169 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 423230 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 423291 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 423352 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 423413 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 423474 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 423535 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 423596 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 423657 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 423718 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 423780 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 423841 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 423902 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 423963 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 424024 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 424085 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 424146 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 424207 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 424268 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 440428-441598 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZDR010000001.1 Salmonella enterica isolate 1921_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 440428 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 440489 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 440550 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 440611 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 440672 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 440733 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 440794 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 440855 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 440917 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 441020 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 441081 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 441142 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 441203 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 441264 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 441325 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 441386 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 441447 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 441508 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 441569 29 96.6 0 A............................ | A [441595] ========== ====== ====== ====== ============================= ========================================================================== ================== 19 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //