Array 1 125347-122049 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRC010000011.1 Alkalinema sp. FACHB-956 contig11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 125346 36 97.2 36 ...............................A.... TAGATAGGCTGACCTAGGGTAATATCCGTAGTATCT 125274 36 86.1 44 AC........A........AT............... TGAGCAGTTGCTAGCACGACCGAATTAGCATTCATCACATGTTT 125194 36 100.0 42 .................................... CATGTCGATCGGTATTGCTTCACATCTACCGGGGTTCCTGGC 125116 36 100.0 36 .................................... GCATAGCGTTTTTGTGATGCTTTAGACATTGGTTAG 125044 36 100.0 34 .................................... GTGTATCTTATCTACGTCCTGAACTAGGATTTTT 124974 36 100.0 35 .................................... CTAACCTTGTGCTCCTTTCGGTAGATTTGAATTAA 124903 36 100.0 36 .................................... ATGATGTATTGCCCCAAGTTGGTGACGATGAAATCA 124831 36 100.0 39 .................................... TTTAATGGTGCTAAATGATTGCTTAGTTTAGCATAACTA 124756 36 100.0 42 .................................... CTACTTAGATATAAAGTAGCATCAGTTAAAATAGGTAAGTTT 124678 36 100.0 41 .................................... TCCCTGTAAATCTCTAAAGGAGAGTTATGATCCCCGTTATG 124601 36 100.0 39 .................................... ATGCTGTGTCAATCGACGGCAAAAGATCTAAGATATGCC 124526 36 100.0 38 .................................... TTTGTAGGATTTAATTCAGTTGGCATATTTTATATCCT 124452 36 100.0 41 .................................... AAATGCTTATCAGCACTACTCAATGCTTGAGCACTGGCAGT 124375 36 100.0 38 .................................... AAAACACGCGGTCTTAGACTGCCAGCTAAGCTGACAAA 124301 36 97.2 33 ....T............................... CAGCTATGGGAAAAACTAACCCTTAGTTTTTCC 124232 36 100.0 44 .................................... TTGTACTGTCCAGCGAACTGGCTTATCAGTGCCTTGATTGATGC 124152 36 100.0 35 .................................... GAAAACCCTTCCTCCAATTCAGGGGATTTATACGC 124081 36 100.0 35 .................................... GTAGCAGTCAATCCTTTTTCGTTCTCTGTTCCGTT 124010 36 100.0 35 .................................... ATCGACATCAACGCCCTCAAATCTTTAAGCCTCAT 123939 36 100.0 45 .................................... TTGAATGCCTCAAGAACTCTCAAGGCATTGTTAGAAATTAGTTTA 123858 36 100.0 38 .................................... AGGTCGGTACAGTTTAGTAAGTCTAGAGATACCGAACG 123784 36 100.0 32 .................................... TAGGTTCGCGGCTCTTGCGAACCAGTCTCGAT 123716 36 100.0 50 .................................... TCGATCGCTTGCTCAATCTCTTTCTCAACCGTTTTACCCTTTTCAATCAG 123630 36 100.0 40 .................................... CCGCAGGCATATTAATCATCTTGCCCGTGAAGTCTGTTAC 123554 36 100.0 37 .................................... CTTGGAAACGGTGATGATGCCTGTGATTGTCTTCATG 123481 36 100.0 46 .................................... CACGCAGGACAAGGTTTCTTGATGGTCTTGGGTGTCGATCTCCCAT 123399 36 100.0 50 .................................... TTGCAAAAACGGCTTTTTCGCCTTGTGGATGAGCGCAGCACATTTGATAA 123313 36 100.0 35 .................................... TAATAACAAGAGGTTCAGACATTGTGTACTCCATT 123242 36 100.0 42 .................................... TACGCAAAGCATCTTCAGTAAATCTATCATAAGGATTACCTA 123164 36 100.0 42 .................................... GCCACAAATTGCCCAGCTTTATTACCTGAGGTGTATCTGTAG 123086 36 100.0 43 .................................... TGGTGTAACTCCCACGGTTCGCAGACTACGGCCATTGCATTGT 123007 36 100.0 41 .................................... TTACGATCCATCGCAAACTGTATGAGGAATCGTAAATAATA 122930 36 97.2 44 .....................T.............. TCACCTGCTTTAATGAATGTAGCTCGATAGTTCACCCCATTCTT 122850 36 100.0 36 .................................... AAAGCGTTGCTCAATTATCCTGAGTGTCTTTATTTA 122778 36 100.0 45 .................................... TTTTTTTGGCTTGTGGAGTGGTAGGCATAGAGCAGCTTAGCCTCT 122697 36 100.0 50 .................................... AAACGAATCTCGCGTAAGTCCACAGCTTTCATGTCGTCAACCCGAATGTA 122611 36 100.0 40 .................................... TTATCGTACTTCACCTCAGGCACCTTGAAGCCTAGCTCAG 122535 36 100.0 37 .................................... GTGAACGCTCTAGCGATCAATGTGGCACGGTCTTTTT 122462 36 100.0 43 .................................... TTGACTGATGGATAAGCGATCGGGCATGCATTAAAATCGTATG 122383 36 100.0 39 .................................... TAATAGGCGGTTTGAATGTCAGACTCTACAAACCATTTT 122308 36 100.0 39 .................................... ACGGGCCGAATGTTGTAGGAAAAGTTGATGACGTGGAGT 122233 36 100.0 38 .................................... CTCTGGGGGATGCTTCCCCGCGCAAGTCTGGCAGCAGT 122159 36 100.0 39 .................................... TGAGTGTAGCGTTTCTTGGAATATTTGATTCTATCCCCA 122084 36 80.6 0 .........................G...ACAGT.G | ========== ====== ====== ====== ==================================== ================================================== ================== 44 36 99.1 40 CTCCCCACTCGCTGGGGAACCCAATTGAATGGAAAC # Left flank : TTCTACGATCGCGACGACGGGGGCTTCTATGATGAGCTGTTCTTCCGATCGACTGATGAGGAAGTCACAGACGCCGTTTAATCCCAGGGCTTCATCGACCGTGAACTCGGTGCCTGAAAAAATGCTGACCGATCGATGCAAGATTTCGCGCAGTTCTACGAGGACTGGACTGATTAACAGTTCTGACCGGGCTTTTTCGGTGCCTACGGCTAGGGCTAAGGTTAAATTTCGTCGGAGGGTTTCTTGTAAATAGTCGCTGGGAGGAATGGGTTGAATTTCGGGTAAAAAGCTGTCTTTTTCAACGATCGTGAGGCCAAAGGCTTGTTTAACTTTTCGCAGGGTGAAGTCGCTGTAGACCATGGAAAAGACTCCTTTGGGCGATCGCTGGTTTTTCCTGTTAGTCTGTGCGATTCAGTGTAGCAGTTTGGTTCACGATTCCTTAAGGGGGATTTATAATGGGAGTTGAAAGCCCTGTAGGTATTAGGTTTAATCCAGCTCTC # Right flank : CCTTAATCAGGGGGAACCTTGAGAGAATGGTTGATTTTTGAACCAATATCATCCATTTTCTCTATCTTTCCGGTTCCCCCTATTATTTCTAGCATCAACGGCGCGTAGCATCGAGGCTAGGGCAGATCGAACCTAGAACGTAGACAAATCCATTCAATCTTGCTATCCCAACCCTATTAGCGATCGCGATCCATTCGTTATAAACTGGATCATCAAGCTTAGGGTTCGATCGAGTATTGTTGGATTTTCTTAGAGCCGTTGGAGAGAAGTCAGGCAGGGGCAGAAAATATTGCTGAATATTACAGGATCGTAACTTTTTGAAACATAGTTGACTTTTCCCCTGGTTTATCCGTAGGCTTATGTTCCAAGGCCAATTACAACCGTGTCATTCATCGATTGATTTGGCTGGACCCCAGAAATTAAAGCGCTACCCAGCGTTGCTGGACACAACAAAGGGTAGCTAAACCCCCAAGCTGTTACAGGCAGCTGGGCGGTCTGAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCCACTCGCTGGGGAACCCAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 168-4037 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRC010000012.1 Alkalinema sp. FACHB-956 contig12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 168 37 100.0 37 ..................................... ATTGATGGCTCTTTTGTATTGGATGACATTATTTCTC 242 37 100.0 41 ..................................... CCGCAAAACGGGCAGGGGAAGCGCTATCACAAGGGCCTCTG 320 37 100.0 34 ..................................... AAGCAAGTCGCGATCGAGGGGATTAATCAGGAAC 391 37 100.0 35 ..................................... AGGTTCAACCGTAAAGCCCATCTCATCCCCAGCGG 463 37 100.0 36 ..................................... GGGATTGCGTTGACGATCTCCAAATCGTATACAAAC 536 37 100.0 32 ..................................... GTAGCTAGGGAATATCGATTTGCAGATTTCAA 605 37 100.0 34 ..................................... GGTCGCCACACGAAAGGCGCATGGGCACTGAGTC 676 37 100.0 33 ..................................... GCAACCGGGTCAAGGACGGGGCATTTCTCCTAG 746 37 100.0 36 ..................................... AAATCGAGCATCATCGGAGAGGGGCCGGTCTGGAAC 819 37 100.0 35 ..................................... CCCAAACTGTGCGCACACTTGTAGAGTCGGGGCGT 891 37 100.0 38 ..................................... ACAGTCTACCCGCACGGCAAAGTAACGGCAACCACCGT 966 37 100.0 35 ..................................... CGACTGGCTATTAGAGCATTCGGGCGAGATGTTAA 1038 37 100.0 39 ..................................... CGGATCTCGTGGCGTTTCTGAGCCTCCAACGATCGCGAG 1114 37 100.0 37 ..................................... CCATGCCCCGGTGACTTTGGCCGTGGTTGCAGGCGGA 1188 37 100.0 35 ..................................... TTCTAGTCGTGCCCAGGTTGCGGCGGCATCCGCAC 1260 37 100.0 41 ..................................... TCACCGTTCCTCAAGATGCCGTGGGACGGAGAGGGAGCCCT 1338 37 100.0 38 ..................................... CAGGAAGAAATCGAGGAAATGTTGGGACGGTGGAAGGA 1413 37 100.0 39 ..................................... TCAAACGAGCCCTCCCGATCGTCGAGGCCCATGGATACC 1489 37 100.0 40 ..................................... AAGGACGGAGCATTCCTCTTAGAGAAGAAATATGGGAGAC 1566 37 100.0 36 ..................................... ACACAAATGGAGCCATTGGCCTACGGAGATCCCAGC 1639 37 100.0 35 ..................................... CTGATAGCCAATGCCTGATTTGGCATGGGTGCCAT 1711 37 100.0 44 ..................................... TTCGTTGGTTTTTTCAGTACGATAGGCTTGCCAATCTCATTCAT 1792 37 100.0 33 ..................................... TCGAATGCGAAATTGACGACACCGACTGGATAA 1862 37 100.0 37 ..................................... TAGAAGCCTCGATCGAGGAACTGAAAAAGGCTCAGGA 1936 37 100.0 38 ..................................... TTGTAGGACGTTAGGGACGGCTTTGAGGAAACGTGCTC 2011 37 100.0 38 ..................................... GGCTTGCTCGAATTCTTCCAGCGTTTCCGCCGCCGCCA 2086 37 100.0 37 ..................................... AAGTGTCCATGTGTAGGCGTGGTCATAGGCTGGCCCC 2160 37 100.0 41 ..................................... CTCGATCGTGATTGTGGAGACACTCGGAGACTTAGCCGCCG 2238 37 100.0 40 ..................................... CTGGAACAGCAACGCAACACGATCGCGGCTAACCGTGCAG 2315 37 100.0 37 ..................................... GGAGAAGCAGAAATCGTTATTCCAGAAGCGGGCTGCG 2389 37 100.0 34 ..................................... GATTCAGGATAGTGCCTGAGACGCCAGGGACAAA 2460 37 100.0 35 ..................................... AGATTGACAAAAGCCCCAAGGAAGGGCTTGAAAGC 2532 37 100.0 36 ..................................... AGATTGACAAAAGCCCCAAGGAAGGGCTTGAAAGCC 2605 37 100.0 32 ..................................... TACCCAGAACAAAACCCTACGATCGAGGTAGC 2674 37 100.0 35 ..................................... ACCCACTAATACCCCCGGCGTAAAGCCCTCCCTCG 2746 37 100.0 39 ..................................... AGTGTGGAATAGGTGATTTGTGGCTTGCGGAATTCGGTG 2822 37 100.0 38 ..................................... GTCTTTGCTCGATAAATTTGCCGCGTATTGAATTTCGA 2897 37 100.0 38 ..................................... CTTCTGAACAGACCCCACTCTATCGATAGGGTGGGGTT 2972 37 100.0 35 ..................................... AGCCTTAATCAGCGTGTTGTTGGCTACAATCTCAC 3044 37 100.0 38 ..................................... ACTCGTTCCGCCATCCATGGATAGGCACGCTCACCGAC 3119 37 100.0 34 ..................................... ACGGTAGAACGGCCCTAAACCCATTGCCTTGAGT 3190 37 100.0 37 ..................................... TACTTATATCATTGTGCTAGCACTTTGATGCACATAA 3264 37 100.0 35 ..................................... ATCGCCACAAACGGGGCAAAGGTAATAGCCTTTCT 3336 37 100.0 39 ..................................... AACCTTGGGTGGGAGTGGAGATAGTAATAGTAGGCACGA 3412 37 100.0 38 ..................................... TAAAAATCCCCCTAAAGTGCCTGACGGAATCGAACCGC 3487 37 100.0 33 ..................................... GCGCCTCGCCCTCGACCCAATCCCCCATCACGG 3557 37 100.0 35 ..................................... GGCACACCCAACAGCCAGCGAGAACAAAAGGGGGG 3629 37 100.0 40 ..................................... GCAACTGAGCTTGAATTCTAGCGAACTCGTGCAGCCTGTC 3706 37 100.0 35 ..................................... TGAATGTGGGTGATCTGAACCTCGAATCTAAAGAG 3778 37 100.0 40 ..................................... TTCTGCGCCGTGGCCTCATTCAGCTTGCTACCAGCGCTAA 3855 37 100.0 35 ..................................... TTCATCATCTGGATCGGTCGGTGTTGCATTCCAAT 3927 37 100.0 37 ..................................... CCAAACCCACCCAAACCCTATAACCCACCCAAACCGA 4001 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 53 37 100.0 37 GTTCGAAAATGGCTGAAACCCTTTTAGGGATTGAAAC # Left flank : TTCCGTTTTTCATGATGTCTTCGGAGCCACAGTTCGGACATCGGAGGAAGGCTGGGATAGATGACATGACTGAATCAATGAATCACGTCTCTCTATTTTCCTCCATCCTTTACAAAAGAACACTACCGAAACGCTTTCTGACGATCGATTGTTAGCCAGCTATATCCG # Right flank : CAGAACCGTTATACTCTGGGACTATTAACAGATGGGTTAGGAGGCACTGACAATGATCATGCATACCTGTCCAAGTTGTGGGCCCAAAAAAATCAGTCGCAATAATGGTCACCCGGCATAGCAAACAAAATTATTACTGTTGGGACTATGGTCGTCAGTTTGTCCTCGATCCCGCCTGGAAAGCCATTACCTCACAACAATATGGACTGATTGAGCAGATGCTACTCGATCTCGTCTCCTTAGCGGGGATTGCCTGCATTCTGCAAATTTCTGAAGACACCGACAACGTTAGGTCAACGTCAAAGCTGCCGTTATGCCCCAACCAGTAGAGGTGAGTGAGGCCCCCCAAAAGCACCAGAATGTGCAGATGGATGAGTTGTGGTCATTGGTTGATGATAAAGGCAATGAGCAATGGGTTTGGTGGGCGATCGATGCTCAAACGCACGTGATTATAGATGTCAAGGTGGGTGACTGGAGTGCGGTATCGGTTCAAGTGTGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGAAAATGGCTGAAACCCTTTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 180-672 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRC010000005.1 Alkalinema sp. FACHB-956 contig5, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 180 36 100.0 38 .................................... CTAACGCGGTCAATCCCGTTTTCTGTACATCCAGCAAC 254 36 100.0 42 .................................... CAGATACCCAACTGTTGATTTTTTTACCCTTTGTACGTTGGT 332 36 100.0 38 .................................... TTAAATCCTTTTGATTTTTCTCACATAGTCTTTACCTT 406 36 100.0 41 .................................... TGGTTTGGCGGTTGGTTGTCAAGGGTGTCCGGTACGCTTGG 483 36 100.0 42 .................................... GATGCCAACAACAACGTATTACTCGGGGCGTCATTTGCCCTG 561 36 100.0 40 .................................... CTGAGCAAATCCCTGATCACCTGATCACAACATTGATTGG 637 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 7 36 100.0 40 GTTTCCATTCAATTGGGTTCCCCAGCGAGTGGGGAG # Left flank : GGGATGGTCTGGCTATCCCTCGCAGCGTCCCCCTGGTGTTGTGACGATCGTCAAGGGTCTACAACGGTTTGAAGGCATTTTCTTAGGTTGGAAAATGACTTTCCCCTGACTTGTGTGTACACGGTAGCAGCGAGTGGGGAGAGACTGCTTCCCTATCAGCTCAAGTCGTTCCACGATCGG # Right flank : GGGTACCCCTATTAAACCCAATCTCCATCGGACTTTCAACCCCCATTTGCGAACCTCAGCCAAAATCCCCTCCCAAACCCCGATCGACCCTCCAAAAAAATCCCCGAAACCCTTACCCCACAACCCATCGAAGCTCCCAACACAAAATCAACCTTTCAGCCCCCTTCCCCCCAGCGTCGCAACCCCAACCCCAGACAACGTAAAAAGTTGCATAGCTTCCGCAGCAACTCGAAATACCTTTGCCAAAATCAGCATACCGAACCGCATCACCCAAGCTGCCATGGCAAACCGATCGCAAGGCTTCCTCAAACTCGAATTCTACATCCGCAACGAACACCCCCAACTCCTCCAGGGCCTCGACCTCTGGCTCCAACTCGGCCTCCTCACCGAAGCTCAAATCCATAAATTCGCCCGCAACCAACTCACCTGCGATCGGCCTATCCCCGAACCCCAACCCACCCCCGATCGCAGCCCCATCCCCGCCGCCGATCTACGCGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTGGGTTCCCCAGCGAGTGGGGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 9281-13210 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRC010000054.1 Alkalinema sp. FACHB-956 contig54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 9281 37 100.0 34 ..................................... TGTTAGTTGTAAGTTGTATCTGTTGTCGTTGCGC 9352 37 100.0 37 ..................................... CGAAGCAGACAAGCGAGTGACGGTCTACAGTCCAGAG 9426 37 100.0 38 ..................................... CAAGCGTTTCTAGACTGTAGGGGGGAAGAGTTGGACAC 9501 37 100.0 40 ..................................... ATGCTCTGCAAACGTTGCTCCACGCCGGGTCACCACTTCG 9578 37 100.0 35 ..................................... CGATCACCTGGGATCGGGGTATTGGTATGCCCTCG 9650 37 100.0 39 ..................................... GAAGCGCACCTACGCAGGGAACTGGCAAGTAACACGGAG 9726 37 100.0 35 ..................................... AAAAAAAGGGGGCAAAGCCCCCGGCAACTCAACAC 9798 37 100.0 39 ..................................... TTAAATTCGTCAGCGCGAAGAGCAGGTTTGCCAGCAGTG 9874 37 100.0 34 ..................................... AGAACTTTTACCAACACACAGGCCGAAAGCCCCT 9945 37 100.0 34 ..................................... CCAAGGCTGCGGGATAGGCGGCTTGGGCAACTGG 10016 37 100.0 38 ..................................... CCGGTGTTCTACCGGTGTAAGCACCGGAGCCTATATAC 10091 37 100.0 35 ..................................... CAGCCAGTAGACGGGTAAGCCCTCTGTCCAGTTTT 10163 37 100.0 36 ..................................... ACGAAGACGATCGGGCAAGAAGGTGGTAACCCGACC 10236 37 100.0 37 ..................................... CAAGGTTCTAGGGCGTACCTGGTGGTACTGGTTGCTC 10310 37 100.0 36 ..................................... CCGCTCAATCCAAACTCAACCGCCAAGCCTACAAAT 10383 37 100.0 34 ..................................... AAACGCTAATGTTCCGAATGGCTAGACTTGGCAC 10454 37 100.0 39 ..................................... GCATCGACAGACCTTGTCTCCTATCGAAAATTTCATAGC 10530 37 100.0 35 ..................................... GCAATAGCCAAAGCCGTGGAAGCAGGGTGGATTTC 10602 37 100.0 40 ..................................... AAACAATTCAACTGCTTAAAAATTTGCACGAAGTAAGGAA 10679 37 100.0 34 ..................................... AAAGAATAAAGCATTGATTGCTTGGTCATCATGG 10750 37 100.0 36 ..................................... CTACTACACCCCATGGGTGAAATTTTTGTTTTGGAC 10823 37 100.0 35 ..................................... AGCGCGACTTTTCAGCCAGCACCCCAACCTCAACC 10895 37 100.0 35 ..................................... TCTTTACGAATTTCTTCGTAATCAAAGCGTTTATC 10967 37 100.0 37 ..................................... TGAACGATAGCGGCGTGCTTTCTATGTTTGTCCCACG 11041 37 100.0 41 ..................................... ATCACGGCATGGCGCGTACCGCTACGGCCTATGTTCTGGGT 11119 37 100.0 38 ..................................... GAGACTGATTTTTCATGCCATTCCTCAGTTTTTTGCAA 11194 37 100.0 35 ..................................... AAGTGACTTATCGTAGTCATCCAGGGAAAGGTCAA 11266 37 100.0 35 ..................................... GCGGAAATAATTGCATTACTTTGATCGATAAAAAA 11338 37 100.0 36 ..................................... GAAACAAAGTTGAAACCTCCAACGCGACTGGGGCAC 11411 37 100.0 38 ..................................... AAACTATTTAATTGTTTTCAGCGTTATCAGCGTCTTTA 11486 37 100.0 42 ..................................... GGGGCGTGCGGACGAGTTGCCCCCATCCTGGTACCTATGCAC 11565 37 100.0 41 ..................................... CACGGCGGAAAAACCCTGGAGTGGAACCCAACAAAAACCCC 11643 37 100.0 35 ..................................... CATCTCTAAATATTTAGAGATAGCCCTTCACTTGA 11715 37 100.0 40 ..................................... TGTTCTTTGTGGCTGGATGCCTGATGTTTGCCAACATCAA 11792 37 100.0 38 ..................................... AACAGTCCTTAAGCTTGGGGTTCTGAACGTCAAGCCAC 11867 37 100.0 38 ..................................... TTGCACTGGAACCGCAAGATACAGGCGAAATGAAGCTG 11942 37 100.0 34 ..................................... GAAGATTTTTGGCAGATTTCGGACGGCAAGACCA 12013 37 100.0 35 ..................................... ATAACCATTAAAGCAAATTCCGCAGGCATTGCAGA 12085 37 100.0 40 ..................................... GAGCAAGGTCTGAAAGACGCCCAAACCAAGGCAGAACAAC 12162 37 100.0 41 ..................................... GCCATACCTGCGTTAGTGAGTAGCCATGCCAACGGGGGAAA 12240 37 100.0 35 ..................................... TTCGTATTGACTCTCCGTTAAACGAAAACTGATTT 12312 37 100.0 33 ..................................... GGGTAGCAAGCCACGCAAAGGGATGCGGGGGAA 12382 37 100.0 34 ..................................... CGATCTCGGTTGTACTCAATCACCTTGCTGATGT 12453 37 100.0 34 ..................................... GTATTGAACGGCCCGTTTGGGGCGACGCTGGCTA 12524 37 100.0 34 ..................................... GATCTCTGGAGTTCCCCCTGTCAATCCAGGAAAG 12595 37 100.0 36 ..................................... TGGTGGGATTGTTGGGGGTTGTTGGGGTACTCGGAT 12668 37 100.0 41 ..................................... CACAGGGCGATCGGGTTCCCGTAACCTAAATAGCGGTAGAA 12746 37 100.0 34 ..................................... GATCGCTGGGATGCGATATCGACGCCACCCCTCA 12817 37 100.0 33 ..................................... AGGACGGTATCAAGTGAGGCGATCCCACTAGTC 12887 37 100.0 34 ..................................... ATGATTTTAGACTTGGTGCAAAAGGCCCTAAAAA 12958 37 100.0 35 ..................................... CCTGAGTGCTTATATGCGCACTAGCGACAACCCTC 13030 37 100.0 33 ..................................... CCGATCTGAAGCACTTCTAGCCAAGGCTGAAGA 13100 37 100.0 37 ..................................... AATTCCGCTACTCAGTGATAGCTTTGCCCTGCGATAG 13174 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 54 37 100.0 36 GTTCGAAAATGGCTGAAACCCTTTTAGGGATTGAAAC # Left flank : CGGAGGATAAGCGCCGGACGAAGATTCATAAAATGCTGAAGTCCTATGGCCAGTGGATGCAGTTTAGTGTGTTTGAGTGTGTGGATTTGTCGGAGACGGAATATGCTAAGTTACGATCGCGGCTGGCGAAGATGATTCAGCCGGAGGTGGATAGTGTGCGGTTTTATTTTTTGTGTGCTTGTTGTCAGGGGAAGGTGGAGCGGATTGGGGGTGAGGCGGTGCGGGATGATACGGTGTTTTTTGCGTGAGGTGCGCGGGTGGGTGGGTGTTTTGTCGGGGAGATGGGGCTGATGGCTGGGAAGGCTGATGGGGGTTGGGTTTGGTGGATTGTTGGGTTGTGGGCGATCGGCGCGGAGGTTGGATATGAGTGTTGATGCGGGTTTTCGGGGGATTGGGGGGAATGAGGGTGATGAAGTTTCTGGGGTTTCTGGCTATAATGGGGGCGATCGGCGATTCTGTACCTTGAAAACTGCATACAGCAATACTTTCAGATGCCCGCC # Right flank : GCTGGTAGTCTTTTTTAGTAAAGGATAAGGAAAAAGACTTGTTCTTTCAAGCCAATGCTTGCTTTAAACGAATCTGTTGGTTGTAGTGGTGGATAAAATTCCAAATCGCACTGATGTGATTCTCCAATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGAAAATGGCTGAAACCCTTTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA //