Array 1 399385-401059 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022961.1 Plantactinospora sp. KBS50 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 399385 28 100.0 33 ............................ CTTCCAGGTCATACCCGCGGAGGTGACGCCCTT 399446 28 100.0 33 ............................ CTGCAACCTCGGTCACGTCAATCTCGGCGCCTT 399507 28 100.0 33 ............................ CTGTAGGAAACTGAAGGGCCGAAGTCAACAGGA 399568 28 100.0 33 ............................ CTGCCGGAGAAACATCTCCGGCCGCAACCGTAA 399629 28 100.0 33 ............................ CCCGGAGGCGACCCGCGCGGATATGTAACAGCC 399690 28 100.0 33 ............................ GTCCGGACATCCCGGCCTTCCAGCCCACTCTTG 399751 28 100.0 33 ............................ GTCGACCAAGACCGTCTTGCCATCCTTGGTCAC 399812 28 100.0 33 ............................ TCAAACGACATCCGCGACTCCCTTCTCTTGGAG 399873 28 100.0 33 ............................ CTGGCGAAGGTCAGAAACATAACCGGAGAGCAT 399934 28 100.0 33 ............................ CTCCTCCGCCCGGTAGGCGGCGGCCCGCCGGTC 399995 28 100.0 33 ............................ CGGGTGGCTCAAGTCTCCGGAGCCGGCCACACC 400056 28 100.0 33 ............................ GCGGGCCATCACCCCGGTCGCCGGCTTGCGGCG 400117 28 100.0 33 ............................ TCCCGGGACGTCTGACCACACGACGAAGCCCCG 400178 28 100.0 33 ............................ ATGCGGTCTGTCCCCTCAGCCGCCGGCTGACGT 400239 28 100.0 33 ............................ GTGCCAAGACGGCAAAACCACAGGTCAGGGGCC 400300 28 100.0 33 ............................ TGTCCTGGTAGCTCTTGCCGGACGCGGCGGGTT 400361 28 100.0 33 ............................ CTACGGGCCGCACCCGTCGCTAGCCTGACTAGA 400422 28 100.0 33 ............................ CGAGACAGCCGGAAACGCGCCGCGGGTCCCCCT 400483 28 100.0 33 ............................ CGAGACAGCCGGAAACGCGCCGCGGGTCCCCCT 400544 28 100.0 33 ............................ CGCGCCGCCGCCGGGGATCGCCCCGAGTGCTGT 400605 28 100.0 33 ............................ CCGGGGGGCCACCGCGCGCCTGCGGCGACTGTC 400666 28 100.0 33 ............................ GGAACCGATCAGAGTGATCAGGTTGTCGAACAG 400727 28 100.0 33 ............................ GTAGCGAGGTTGAGCGACCACCGCACCCGCTCC 400788 28 100.0 33 ............................ GGGCGGCAGGCCCTTCAGCCACAGGCAGGTCGT 400849 28 100.0 33 ............................ GCCGTAGAGCGCGCTCGATCGGTTGCGCGGGTT 400910 28 100.0 33 ............................ TTTCCGAGCGACCCACCTCCGCCACAACCCGAA 400971 28 100.0 33 ............................ CTGTCACAACATCAATATCAACAGGGCTTTGAC 401032 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 28 28 100.0 33 GTGCTCCCCGCGCATGCGGGGGTGATCC # Left flank : GTGTGGCTTCGGGTGCCGGGCCGACACTGGCGGCGCCGGCCGGGGTGCTCGGCCGGCCGGGCGTGTGTCGGGGCAACGTTGGATGTTGGGTGTGGTTCGGTCGGGTGTGGGCGGTGCGGGGGCGGGTGGCGCGATGATGGAGCGGGACGAGCGGCCGGTGCGTGTACCTGTCAGTCTTGATGCTTGGCGGTGGCCGGTGCGGATCGGTGACCTGGTGTGTGGGGAGTGCGACGTCACGCTGCGGATCCATCAGTTCACGGCGATGTCTGAGCTTGCTGCGGCGGTCGAGAGGCATGCGCTGGTGTGCGTGATGTCCTGAAACGACGGAGGCCGCTGGTGTTGCGGTGTGATGCGTTTCGGTTGGGGGTGACTCGACAGCGGTGTTCCTGGAGTGGACAATCGCTGGGCGCGTGTCGGATCGTTGCCTCGGAGAGGTGATCTTGCGGAGCAAAGTGAATGAAATCCGAGTAGTTGATCTATGGCGCCGCAGGTCAAGAAGT # Right flank : CGTCCTCGAAGGTGGCGCCCAGGTTGTATTTGCTCTGCGGGCGCAGACCGGATGCATCCACGCCGTGACCGCCGCCGGAGAGGGGTGGGTGGGGCCGCCGCTTCGGCGACAGCCCCACCCGGTTGCGGAGTTGGGAGGGTTACAGGGCGAAGCAGTCGGGACGGATCGCCGCGTCGCGCAGTGCGGCCCGGACGATCGTGTACGTCGTACCGTCCAGCACCAGGCCGAGGTGGCCGACCACCCGCAGCGGGCAGTAGCCCTGGACCAGGATGTTCGTGGCGCCGCCGCTGAGCGTGGCGTTCGGGGTCGGCCGGACCAACTCGTCCTGCGCGGTCCGGATGGTGGTGTAGCGCACGTCGCCCGGGGCGTCGTCGCCGCTGTTGAGCGCGGCCAGGAAGGACGATCCGATGGTCATCTGCTGGCAGGCGATGATGCCGATGCAGCTACCCAGGCCGATAAACGCCACGATGTTCGCCACGTAGGTGCCGTACTGCGGGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 2 1075682-1074128 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022961.1 Plantactinospora sp. KBS50 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1075681 28 100.0 33 ............................ GGACACGCCCGTGCCGGGTGCCTACCCGCCGGC 1075620 28 92.9 33 .C.........A................ CAGGGTGGACACCTGCCCATTCGAGATGCCCAG 1075559 28 100.0 34 ............................ GGGCAAAACCACTGCTGCGCAGCGGAAGGCGGAC 1075497 28 100.0 33 ............................ GTTCCGCACCGATTTCGTACAGGCGTACATGCC 1075436 28 100.0 33 ............................ TGACATTCTCAACCTTGCCAGGGTCGAAACGAT 1075375 28 100.0 33 ............................ CTCGGGACGACCACGGGGGAGCTGCACGCGGCG 1075314 28 100.0 33 ............................ GCAGGCGCTGACTCACCGGACCGAGCGCCATGC 1075253 28 100.0 33 ............................ CGGGATGTCGTCGTTGTAGGGGGATCCGGGCAC 1075192 28 100.0 33 ............................ GGGCGGAGATTCCCTCCACGCTGCGCGTCGAAC 1075131 28 100.0 33 ............................ GGCGCCGTGCTGAACCGGCCACACGGGGACTGG 1075070 28 100.0 33 ............................ CGGGAGGCGATGCGGGTGGACGACACGACACAG 1075009 28 100.0 33 ............................ AGCGAGGCCGGACGGTGACCGCCGACGACGTCT 1074948 28 100.0 33 ............................ CTTGGCGCCCCGTGTGATCGCCAGATCGTCGGA 1074887 28 100.0 33 ............................ CCCGCGCGGCATCCCCGAGCGGACCATCACGGA 1074826 28 100.0 33 ............................ CCTGTCCGCCACGTTCACAAACCCCACCGCCGT 1074765 28 100.0 33 ............................ CTCGGCGCGTGTGTGGTGGCGGCCGGCCACCGC 1074704 28 100.0 33 ............................ TTGATCGTGAGGGTCATCGAACCCCCGTCGTTG 1074643 28 100.0 33 ............................ CCAAGACCGTCTTGCCGTCCTTGGTCACAGCGG 1074582 28 100.0 33 ............................ TGCGCGAACGGCCGGACGCGGCATATCCAGCAC 1074521 28 96.4 33 A........................... GTCGCGACCTACAACGCCGAGGCCGGCGACATC 1074460 28 100.0 33 ............................ GCATATGGCCGCCTGGGGAGGCGTATGGGCTCG 1074399 28 100.0 33 ............................ TTGAGGAGCTGGAAGAGTGAACAGAGAGTCATG 1074338 28 100.0 33 ............................ CACGGCGATCGGGTTGTCCATCGTCACCGTCCT 1074277 28 100.0 33 ............................ GTGCTCGCCGTACTACAGGCTGGTGAGACGGTG 1074216 28 100.0 33 ............................ TGTGCGTGGACGACGCCATGGGCATGGGCACAG 1074155 28 92.9 0 ......G............A........ | ========== ====== ====== ====== ============================ ================================== ================== 26 28 99.3 33 GTGCTCCCCGCGCATGCGGGGGTGATCC # Left flank : GGTGTGGCTTCGGGTGCCGGGCCGACACTGGCGGCGCCGGCCGGGGTGCTCGGCCGGCCGGGCGTGTGTCGGGGCAACGTTGGATGTTGGGCGCGGTTCGATGGGGCGCGGGCGGTGCGGGGGCGGGTGGCGCGATGATGGAGCGGGACGAGCGGCCGGTGCGGGTACCTGTCAGTCTTGATGCTTGGCGGTGGCCGGTGCGCATTGGTGACCTGGTGTGTGGGGAGTGTGACGTCACGCTGCGGATCCATCAGTTCACGGCGATGTCCGAGCTTGCCGCGGCGATCGAGAGGCATGCGCTGGTGTGTGTGATGTCCTGAAACGATGAGGCTGTCGGTGTTTCGGTGTGATGCGCTTGGGTTGGGGATGGCTCGACAGCGGCGTTTCTGGAGTGGACAATCGCTGGGCGCGTGTCGGATCGTTGCCTCGGAGAGGTGATCTTGCGGAGCAAAGTGAATGAAATCCGAGTAGTTGATCTATAGCGCCGCAGGTCAAGAAGT # Right flank : GGAGCGCCGATGGCCGATGTTTGCGTTGCGAAGCCGCACTCCCCATCCCGATGGCGCCAAGATCATCTCATCTTCCGTGAAGTTGGGGGGTCCGAGTGGCCGGGATACCCCGAGTTCCCTGAAGACGAGTTGATCATGGCGACCGCCAGGGCGCCGTGCCCCTTCGACGGGGTCCTCGCCCACAGATGCCGTTCAGCGACGACCGGTTTCGGGGTGGGGACGCCCGAACCGACACCGCGGCAACGGGCGGTAGGTCACAGGCGGGCAGGCGACCGCGGACAGAGGGCGACGACGGGCGGTAGGTCGCAGGCGGGCAGGGGACCACGGACAGAGGGCGGCAACGGGCGGCGGACCGCAGGCGGGCAACGAACCGCGGACCGCGGACAGAGGACCGCAGGCGGCAACGGGTGGCGGGGTGATCTAAACCCGTTGCCGGCGGGTCGATCGGATGGATAGGTTGGCCGTACACGGGAAAGGAGGTGGTCCAGGCTTTGTGTAGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 3 3913292-3912276 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022961.1 Plantactinospora sp. KBS50 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 3913291 30 100.0 40 .............................. GCGCGCCAACGCAGACCGGAGCCCCGATCGGGAGGTACCC 3913221 30 100.0 37 .............................. TGGGACCGGGTGTCCAGGCAGATCCACCGCACCCGGC 3913154 30 100.0 36 .............................. TCGGCGCCAAGCTCACCAAGCGCGGCTGGGCTGAGG 3913088 30 100.0 33 .............................. GCCTGAGGTGGCCGGCCAGCTACGCAGGATTCT 3913025 30 100.0 40 .............................. TGGCGGGTCCTGTCCGGTGGGGTGCCCGACACCCGGACCC 3912955 30 100.0 38 .............................. ATCGCCGGCGGGCCGGAGGCCCGAGCGGCGGAGGTCAT 3912887 30 100.0 35 .............................. CGCCTGCGGGCGGCAATCCAGATTGAGAAGACGCA 3912822 30 100.0 35 .............................. CACCACCATCTGACGGAGCGCAGCCATGAGCGAGA 3912757 30 100.0 36 .............................. TCCCGAGGTCATCTACTCGGGAGTCTGGGCGCGGCT 3912691 30 100.0 36 .............................. AATCGACACATACCTGTGGGCGGCGGAACTGATCAA 3912625 30 100.0 32 .............................. CCCGTCGCCCCAGGCTGGGCGCCCAGCCTGGT 3912563 29 96.7 35 ...............-.............. TCGGTGCGCATGCTTCAACGCCGCGCCCAGGCCGG 3912499 30 100.0 34 .............................. CTCCCGAGCGGCCGGGCCGCCGGCGGGACGGCAT 3912435 30 100.0 35 .............................. GCACCAGCTGATCTGCCAGCGCCACACCGTGACGA 3912370 30 100.0 35 .............................. CGTTACGTGGCAGGTCCCGCACAGCAGCGCCCCAC 3912305 30 96.7 0 ..........................T... | ========== ====== ====== ====== ============================== ======================================== ================== 16 30 99.6 36 GTTGCGATCCCTCCAGGGGTGATGGGCGAC # Left flank : GCGCGGTCGGTCCCGGCTGATCTGCGGCGAACAGCGCCACCACCGCCGGCCGGAGCGTGTCCGGATCGCGGCTACGCTTCGCGTGGGTCGGCTTGGCGTTCGGGTAGAGCGCGAACAGCACCTTCCACCAGTCCGGCTCCGGCTTCTTCGGCTTGGTGGACGCGGTCACCACGTCGTCGACCAGCCGGCCCGCGACCGTGTCCAGGTCGTCCGGGGTGAGCTCGCCAGGCTCGTCGCGGCCAGCGAGGACGGCAACCGCCCAGGCGCCGCACCGTTGCAGGGGATGCGCCGTCAGCGCCAGCGCCGGAGGGGCCACGGTCGTGGACAACCCCATGGACCCGACCTCCCTTCACGTTGTGGTCACCGGACTGGCAAACGAGCGGTCGACACCGACGACACGGCTTCGAATCCACGACCTTGCCGGCGACCGTCCACTGTTGATGCCGATGCGTGCGTGCCCACCCGTCCCATCAGGAACTACAGCTCATCGGGCAGACCGT # Right flank : CCGAACCTTAAGTCGCAGGTCAGGGCCGTCTTTTGGGGCTCGGTTGGGGTCGATTTTGCAGCGGACCGCCGGTCGTGCATTTGTGCTGGTCAGAGCGTCGGGCCGGGAGCGGTGCGCGAGCCGGCCGGTCGTGTTCAGCGGACCCAGCCGAAACCCTCGATGGTGGCCAGTCCGAGGCCCCACTCGCGAAGCGCGTCGACAAGGCGGGGGTCGGCGTGCAGGCGGATCTTCGCGGTCGCTCCGATCCGGATGCCGCCGCACACGTCGTACCGGCGGCGCTTGCCGGCGTCCAGCACCTCAAGGTCGGCGTCGCCGGGCACCCCGAGCGCTTTGGCCTTGCGCCGGATGTTGGCCAGCAGCCTTTCGGTATACCCGTCGTCCTCGGGCAGCAGGTACCGATCGCCCTCGGCCTTGATCAGGATGGGCGTGCGGGTTTCCAGGACGGCCGGCGTTTCCGCGCCGCCGACCGGCTCCAACTGTGCGCCCTTGACGGTGAGGGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGATCCCTCCAGGGGTGATGGGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 3921054-3921556 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022961.1 Plantactinospora sp. KBS50 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ========================================= ================== 3921054 31 100.0 36 ............................... ATCAGCAACACCCGCCGCCACCCATCCGGGTCGCAG 3921121 31 100.0 36 ............................... CGGTAGGGGTGGCGTTGCTCTGGCGTCCATCCGGGC 3921188 31 100.0 34 ............................... GGTCGGCCGGATGGTTGGGGGTTGATGGCTTGGG 3921253 31 100.0 41 ............................... TGGCCGCCGTAGACCACCCTTCTGACCCCGACCTGGTCCCA 3921325 31 100.0 36 ............................... CTGCGGAGCGCGGCCGGTCTGGCCGCGCTCCGGCTG 3921392 31 100.0 36 ............................... CGTACTTCCTTCAGTGGATGATTTGCGATCATCCAC 3921459 31 100.0 36 ............................... CGGTTTGCTGCGGGTCCGACACCGCGGCGAGCTGGG 3921526 31 93.5 0 ............................G.G | ========== ====== ====== ====== =============================== ========================================= ================== 8 31 99.2 37 GTCGCCGCATCACCCCTGGAGGGATCGCAAC # Left flank : CGCGAGGAGTTGGCCACCACGGTCCACCACCGACAGCTCAAACGGAAGGTCTCCTACGAGGAACTGATCCACCTGGAGGCGCTCAAACTCGTCCGGCTCTGCCTCGAAGGCACCCCCTACAAGCCGTTCCGTCCGTGGTGGTGAACGATGTTCGTCGTTCTGGTCTACGACACCGCCGTCGAGCGCAACCCCAACGCCCTGCGGACCTGCCGGCAGTACCTGCACTGGGTCCAGCGCAGCGTCTTCGAAGGCGAACTGTCCACCGCACAACACCGCAGCCTGATGACCGCCCTCCGTCAGCAACTCGACCTCGGTCATGACAGCGTCCGCGTCTACCGGATAGGCTCCCCCCACCTCGTCCAGGTCGACGCCCTCGGCACCGAACTCGGGAACTCCGACTCGGTGCTCTGACCAGCACAAATGCACAACCGGCGGTCCGCTGCAAAATCGGCCTCAACCGAGCACCAAAAGGTGGCCCTGACCTGCGACTTAAGGTTCGG # Right flank : GGGCGTACGATCACGAAAGATCCGCCGCCGGTCGGTGGTCGGGATGTGGACTATGACCAGCAGCGGCGGGATCTGGTTGCGCAGGGCCGGTCCAACTGCGGGCGCATCGCGATCAGCGTACGCGGCATGCAATCCTGGCTTGTACGCATCGCCCCCGGCACGGTACGGCAACTGGACGAGGAACAATTCGCGGCACGGCTCCGTGAGGCAGCCGGCGAACTGATCCGCGACCAGTTCGCCGGAATCCGCGTACTGAAGAGCCGGATCTACGGCTGAGTCCGGGAGGGTGTCGTGACTTCATCTCACCGCCGCGGCCCGATCGTCTGGTCGGTACTGGTGTGCCTGCTGCCCACGGCCACGGTGAGCGGATGCACATCCGACTCGTCCCGCCCGCAACCCTCGGCATGCGCCGTACCCACGGCCGCTCCGTCGGGCACCGAGGGTCCAGCAGACCAGGCACCAGGCGGCGGTGGCCTACAAGTCGTCGACCACGGCCACAC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCGCATCACCCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 5 3922852-3923556 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022961.1 Plantactinospora sp. KBS50 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3922852 30 96.7 35 ...A.......................... TCCAACGTCTCAACCGCGTCAACAGACGCAGCAAG 3922917 30 96.7 38 ..........G................... GCACCCTGGTCTACGACGATCCGGCCACCCACCGGCTG 3922985 30 96.7 35 ..........G................... CCCAACCCAACATGGCCGGCATGCTCGCCACGCTG 3923050 30 100.0 38 .............................. CGGACCGGTTCGCCGTGGTGGAAGTCGTGGAGGAGGAG 3923118 30 100.0 34 .............................. CCCATCGCCTCGGCGACGTCACCGCCGAGAGTGA 3923182 30 100.0 39 .............................. ATGTGCACCAGCTCCTGCGCCACCCCCACCAGGGGGAAC 3923251 30 96.7 39 ...A.......................... GGGCTCAGGAGGCGTTGGGCAGGGCGACGCAGCAGGCCG 3923320 30 96.7 39 ...A.......................... GCGGTGGTGTTGGAGGCGGATGTGTTGGATCAGGCGGCG 3923389 30 96.7 39 ...A.......................... GCCCTCCGCCCATTCGTCGTTCCAGTTCCGCGACGTCCA 3923458 30 100.0 39 .............................. GCGGTGTACGCGATGAAGTAGCGCATCTGCGCCTCCTCC 3923527 30 93.3 0 ...........................CG. | ========== ====== ====== ====== ============================== ======================================= ================== 11 30 97.6 38 GTCGCCCATCACCCCTGGAGGGATCGCAAC # Left flank : TGTTCCCCACCGTCACCACCACCTACCTCGGAGTCGATCGCTTCGATGGGGACCCGACCAGCGGTAGGGTGCGGTACTCCGTCACCTCCACGTCGTGCCGCCCGCTGGTCGCCCGAGGCAGCTTCGCGGTCTTCCTCGACCAGACCGGCGCCGTGGTCGGCGGCGCGTTCGACCCGGACACCACTTCGCCACACTGCGATGCCATGGACCATGAGGAGTCGCTGTCAACGATCCACAGCATTCCGACCGGGATCGACGAGGCCAAGACCGTGGTCAGCGTCTACTGCGACATCGCCACAGTCGGCGGCGGCCGGGTGAAACCCTCCGGCGCACCCTTCAACTGACCGAAAACCCAGCCGTACGTGTGCCGCCAGCCGCGCCCCCGACGACGACCCACGTTCGGTACGCTGACCAGCACAAATGCACAACCGGCGGTCCGCTGCAAAATCGGCCCCATCCGAGCACCAAAAGGCGACCCTGACCTGCGACTTAAGGTTCGG # Right flank : CGGACCGAGGTCTAGGCCGCCGATACCGCTTGACAGCAAGGTCGCCGTATCACCGCAGCCCCGCACACCGGGAACTGCCCCGGGATCCTCGGGACCCGACGCCGCAGCGCGGCCACGTCGAGGATCGCGTCGAACGTGGATGCCTTCGGCGCTGCCCTGGTCAGGAGCTGCTGACGTTCGAGCCGGACCGCGACGGACCGGGCCATCGCGTCCGATTCCACTCCGGGCTTGGTGGCGTCGGCAGCCTCGGCGTGCTCCCGTGCTGCCCACGGCGTTCGAGCCTGCTCCATACCGTCATCAGGCCGGCAGCCCGGTCAACGGCTCGACAGGACCCGGTGGGCCGGGCCCGTTCCAGCGTTGCCGGCGTTGGTCCTATTGTCTTGGCGTGAAGCGCCCACCCCTCCCGATCGCCGTCGCGAGCGGTCTCATCCTCGTCGAGGCGATCGTTTTCATCGTTTTTGGCACTCCGATCCTTGCCGCGCTCGGCGTGCTGACGTCCG # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCATCACCCCTGGAGGGATCGCAAC # Alternate repeat : GTCACCCATCACCCCTGGAGGGATCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 6 4498295-4497861 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022961.1 Plantactinospora sp. KBS50 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 4498294 31 100.0 36 ............................... AGGATCTCAAGCATCCTGGGGAGCTGGCCCGGTTCG 4498227 31 100.0 36 ............................... AGGATCTCAAGCATCCTGGGGAGCTGGCCCGGTTCG 4498160 31 100.0 36 ............................... ATTGCCTGGGCCTGGGTCCGGCCCCAGTGACGAGCC 4498093 31 100.0 40 ............................... TACACGGAGAGGGCCGCCATCTTGGTGTCAACCGCCGCAG 4498022 31 100.0 35 ............................... AAAAACAGCGGCCCGCCCGAGCCCGCGCGGGGGTT 4497956 31 100.0 34 ............................... TTCAGCGACTGGCCCATGTCCGTCAGGACGACGG 4497891 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ======================================== ================== 7 31 100.0 36 GTCGCCCCATCACCCCTGGAGGGATCGCAAC # Left flank : CACAGTTCGGAGACCGTTTCGCCGTTGATGTCGCCCCATCACCCCTAGAGGGATCGCAACCCGTGGCCGGACGGCAGGTGCCAGCGGCCGTCTCCCCAGGTCGCCCCATCACCCCTAGAGGGATCGCGATCGGGTCTCGTAGTCCGGCCCGCGGGCGCCCCTGCCTGTTGTCCGCCTGTCCATTTTCCAAGATCAACTCATCTTCAGTGAAGTCGGGGTATCGCGGCTGCCTGAACCCCCAACTTCACTGAAGATGAGTTGATCATCAGCCAACAACATCCCGTTCAATGCCAGCCCCTATACCGGCCTCGTCCGCCCGCCCCGGCCGGGGGCTGACTCCACCTTGCGACGGGCCGGTCGCGGTGCTCGTGTGTGGGTTCCCGCTCGGCGCTCTCAATTCCGGTACGCTGACCAGCGCAGATGCACAACCGGCGGTCCGCTGCAAAATCGACTCGACCGAGCGCTCCAAAGGCGGCACTGACCTGCGACTTAAGGTTCGG # Right flank : GTGATGTTCGGCGGCGTCAGGCGCAGTGCCGGGTTCGGGTCGCCCGTCATCGGGCGGGGGCGCCGTGCGTCGGGGGTGGGTCGGGCCGGCAGAATCGGGGGGTGGCCGTGCACGAGATCACCGACGCCGACGACCAGCGGATCGCCGACTACCGGGCGCTCACCGACGTGGAACTGCGTACCCGGTGGGAGCCGCCGCACGGTCTGTTCATCGCCGAGGGTGAGCTGGTGCTGCGCCGGGCGCTGCGGGCCGGCTACCCGCCCCGGTCGTTCCTGCTGGACGCCAAGCGGCTGGACCAGCTCGGTGACCTGGACACCGGGGACGCGCCGGTCTATGCCGCGCGGCCGGAGGTGCTGGAGCGGGCCACCGGCTTCCACGTGCACCGGGGGATTCTCGCCTCGTTCCATCGTCGTCCGCTGCCCGAGCCGGCGGCGCTGCTGGACACCGCCCGCCGGGTGCTGGTGCTGGAGGACGTGAACAACCATACGAACCTGGGCGCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCATCACCCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 7 4498902-4498665 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022961.1 Plantactinospora sp. KBS50 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 4498901 31 100.0 37 ............................... GCATCGAGGTCGCGTCCATCTCGGGGTAGCCGGCCGA 4498833 31 100.0 37 ............................... GGAAGATCCACAGTTCGGAGACCGTTTCGCCGTTGAT 4498765 31 100.0 39 ............................... CCGTGGCCGGACGGCAGGTGCCAGCGGCCGTCTCCCCAG 4498695 31 93.5 0 ............................G.T | ========== ====== ====== ====== =============================== ======================================= ================== 4 31 98.4 38 GTCGCCCCATCACCCCTAGAGGGATCGCAAC # Left flank : ACCAGCTCGCGGCGCTGGTCGTGGACGCCGAGGATGGCATCGCCACCCTGCTGGCGAGGTGGGAGGGTGTCCGGGGCGTAGCCTTGCCGCACGCCCTGTCGATCGCCCTGGTGAAGGAAGTGCAGAGTCAACATGGACCTCGGTAACGCGATCTGGAAGAAGTCCACCCGCAGCGGCACCAGCGGCGGCGACTGTGTCGAGGTGGCCGGCAACCTGCCGGGGATCGTGGGCGTGCGCGACTCCAAGGACCCGGCCGGCCCCGCGCTGGTGTTCCGTCCCGGTGCCTGGCAGGGTTTCGTCGACCTCGCGAAGCGGATCGGCCCGGTCGGCTGACCCACCCCGCCGGGGGACGGTCCGCGCGCTGGTCACCGTTTCGGGCTCCGCTCGGCGCCCCCAATTCCGGTACGCTGACCAGCGCGGATGCACTACCGGCGGTCCGCTGCAAAATCGGCCCCACCGAGCGCTCCAAAGCTGGCTCTGACCTGCGACTTAAGGTTCGG # Right flank : CGGGTCTCGTAGTCCGGCCCGCGGGCGCCCCTGCCTGTTGTCCGCCTGTCCATTTTCCAAGATCAACTCATCTTCAGTGAAGTCGGGGTATCGCGGCTGCCTGAACCCCCAACTTCACTGAAGATGAGTTGATCATCAGCCAACAACATCCCGTTCAATGCCAGCCCCTATACCGGCCTCGTCCGCCCGCCCCGGCCGGGGGCTGACTCCACCTTGCGACGGGCCGGTCGCGGTGCTCGTGTGTGGGTTCCCGCTCGGCGCTCTCAATTCCGGTACGCTGACCAGCGCAGATGCACAACCGGCGGTCCGCTGCAAAATCGACTCGACCGAGCGCTCCAAAGGCGGCACTGACCTGCGACTTAAGGTTCGGGTCGCCCCATCACCCCTGGAGGGATCGCAACAGGATCTCAAGCATCCTGGGGAGCTGGCCCGGTTCGGTCGCCCCATCACCCCTGGAGGGATCGCAACAGGATCTCAAGCATCCTGGGGAGCTGGCCCGG # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCATCACCCCTAGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //