Array 1 681431-682318 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP066885.1 Staphylococcus pseudintermedius strain HSP079 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    681431	    36	 100.0	    30	....................................	AATTTGTTGTTAACTAAGTCTGGTGAAGTT	
    681497	    36	 100.0	    30	....................................	TACAACTCCCTTATCAAGCGCTATTCCAGT	
    681563	    36	 100.0	    29	....................................	TATTGCGTTATTTCTTTATCACGCTCTTT 	
    681628	    36	 100.0	    29	....................................	AAAATGGTTGTTGAGATTACTCAAATAAT 	
    681693	    36	 100.0	    30	....................................	TGCTCACAGAATTAGAGTGTTGGCGCTTAA	
    681759	    36	 100.0	    30	....................................	TAGGTGTCCAATCAAAAACTTTAAGTAGGA	
    681825	    36	  97.2	    29	.C..................................	GAATTTTGCAGTCCTAGTAAGCGATAGCG 	
    681890	    36	 100.0	    29	....................................	AAATATTGGCGTTCTCAGTTTAACCCATA 	
    681955	    36	 100.0	    29	....................................	AATACTTCGACAAATCCATCGTCAAGTAG 	
    682020	    36	 100.0	    29	....................................	GACGGAACGAATCGTTACCCCCTTTTCTT 	
    682085	    36	 100.0	    29	....................................	ATTCCTAATATCAAAAAGATTGCAGACAG 	
    682150	    36	  97.2	    30	............................A.......	AAATAATGTCTTAACCTGGAATTATGTGAA	
    682216	    36	 100.0	    30	....................................	GTTATGATGTTTGGCGATATGGGTCGTCGT	
    682282	    35	  86.1	     0	.........T................-.CA.C....	|                             	TC [682315]
==========	======	======	======	====================================	==============================	==================
        14	    36	  98.6	    30	GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	                              	       

# Left flank :   TTTTAATTATATTTTTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTCACTAATCATCCTTCTATCATTATTAATGAGGAAAACATATTTCTATGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTTGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGTGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCTAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG
# Right flank :  CCTTCTTTATAATCGTACATCAACCTCACTATGCCTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGCAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCGCATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATG

# Questionable array : NO	 Score: 6.19
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.20,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-8] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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