Array 1 1779273-1779480 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI535597.1 Klebsiella oxytoca MGH 42 addTf-supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1779273 28 100.0 32 ............................ ATCCCCACGGAGGCCAGCGCCTCCCGGCTGTT 1779333 28 100.0 32 ............................ CATCATGGCATCCCAGGCGCCGCTGGCAGCAT 1779393 28 100.0 32 ............................ GGATGACCGATCGCATCGGCATTTTTGAATTG 1779453 28 82.1 0 ............T.C.....T.C..T.. | ========== ====== ====== ====== ============================ ================================ ================== 4 28 95.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CATCAGCAGCATGCTGGTGGCGAAAGGTCTGCCGGGCTTTATCGCTTATGGGGTTTTAGCTGGAGAAGTGGTTGCGCCATGTCTGCTGATTGTGGGGATCCTGACGCGCCCTGCGGCGCTGGTGCTGGCATTCACGATGGTTGTGGCCTGGCTGATGGTCGGGACGGGTAAAACCTTCGCGCTGGATGCGGTAGGCGCGTGGGCGATTGAGAGTCTGGTCTACTTCTTTGTTGGCGCGCTGGCGATTGCCTTCCTCGGGGCAGGCCGATATTCCATTGGCGGAAACTCGGCCTGGCGGTAAGTGCACCAGGATTTTCTGCCTCACCCTGGCCACATCCTGTTTGCCGGGGTGTCGCCGCTCGTTTTTCAGACCCTTTTTTGGGGAGGGTATTTTAAGATCTTGATTTTTTAATATTTTTATTGTTGTCACAAAAAAAGGGTAAAAGGGCCTTTTATTGATTATTGCATGATAAAACACTAAGGCAGGTGCGCGGGCTAGT # Right flank : AGAGCCATGCTACCCGACGATTACCGCGTAGCATGGTCAGCAACAACATTAAGCCAGTACCAAATCTCCCTGCGGCTGGCAGGAGCAGGCCAGCACGTAGCCTTCAGCGATTTCCGCATCGGTTAACGTCATGGTGCTGCTGACGGTATATTCACCGGAAACCACTTTCGTTTTGCAGCAGCCGCAAACGCCCGCGCGGCAGGCGACGGTAACCGGCACCTTATTGCTTTCCAGCGCTTCGAGCAGCGTGGTGCCGACCGGGGCATAAAACGTTTTCGCCGGCTGCAGTTTGGTGAACTTCAGACCGCTGGTGGCCGCGACGGCGACTGGCGTAAAGAACTGCTCTTTAAAGAAGCGCGTCGCGCCCAGCGCTTTCACTTCCTGCTCGACGAGATCCATATACGGCGCCGGACCGCAGGTCATCACGGTGCGCGATGCCAGATCCGGCACGCTTTGCAGTAGTTCAGTCGTTAAACGTCCTGCCACGAAACCGTGGGTAG # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1792740-1794569 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI535597.1 Klebsiella oxytoca MGH 42 addTf-supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1792740 28 100.0 32 ............................ ACGTAATGAGCGCTCTGGCGGAAATGGAAAGA 1792800 28 100.0 32 ............................ TACAAAAATTCCTTATAATCCGTCTACTAATG 1792860 28 100.0 32 ............................ GAATTAACAAGAAGTTTATGGACGCGAGCCTA 1792920 28 100.0 32 ............................ TTTAATGTTAAAGCGCTTGCTGTTGCATAGCT 1792980 28 100.0 32 ............................ ATTTCACAATTAGGCGGTAATTCAATTTCTAG 1793040 28 100.0 32 ............................ ATTCGGTGACCGCGTTTCGGAATCGTTGTCAG 1793100 28 96.4 32 .........T.................. CCGACCGCGCCCAGCATGCCGCCGCCCTGATA 1793160 28 100.0 32 ............................ TCATAAAAAAGGCCCGCATTTGCGAGCCTGTT 1793220 28 100.0 32 ............................ GGAAAATATGACGGTATAGGTTTTGTATTAAC 1793280 28 100.0 32 ............................ ACGTACATTACAAAACAGGGCGGCGTGATGAC 1793340 28 100.0 32 ............................ GTAATGCGCCGGCGGTCGCGCTTGCGCATAAA 1793400 28 100.0 32 ............................ GATGCTATAGCCGCAATGAATACCGGAAAATA 1793460 28 100.0 32 ............................ TTTAATAATGATGTGTAGGCCATTACCAGAAG 1793520 28 100.0 32 ............................ GTAACCGCATGTCGGCTTTTGCTGCATGGTGG 1793580 28 100.0 32 ............................ TTCGGCCATACCGCGATACGACGCTTAACCAG 1793640 28 100.0 33 ............................ TCGACGCGCTGGCCTCGCTGCTGATTTCTACGA 1793701 28 100.0 32 ............................ TACCGGACAACGATCACCCATTGTCATGTAAC 1793761 28 100.0 32 ............................ AATTACGACAGGGACGATACGAATTACTTCAC 1793821 28 100.0 32 ............................ TGTAATGGCATCGGGAGGCTGTCATGTGGATA 1793881 28 100.0 32 ............................ GGCTGCGTCGGGACCCACCACATCGCCAGCAG 1793941 28 96.4 32 ........T................... CCTGGCCCCGGCAGTATCTATGATGGTCAGGG 1794001 28 100.0 32 ............................ GGAAGAAATCACCGCCATGCTTACCGCAGGAG 1794061 28 100.0 32 ............................ GGCAACTGGCAGAATACGCTGACCGGGCAGCA 1794121 28 100.0 32 ............................ ATGCACCGGTAGAAGAACGCTGATCAATTGCC 1794181 28 100.0 33 ............................ TGCGGCTGCACGACCAGCGTCAGGGAAATCACT 1794242 28 100.0 32 ............................ CTCTTCGCGTCTGCGATACCGGAAACGGAGAC 1794302 28 100.0 32 ............................ ATGCACCGGAAGAAGAACGCTGATCAATTGCC 1794362 28 100.0 32 ............................ GTAAAGACGCTACCAGGCACATCGCTGAATAA 1794422 28 96.4 32 ............G............... TCGACATCGCCGAGAGCGGCGTAGCCGTATAG 1794482 28 92.9 32 ............G.......A....... TGCCCGCCGAGCCGGAAAGCGACAGCGGTAAA 1794542 28 92.9 0 ....T.C..................... | ========== ====== ====== ====== ============================ ================================= ================== 31 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTTATCCACCAGGTGGTGGATAAGTTTATCGTTGAGCTGCAGGTCCAGCTGGATCAGAAAGGCGTCTCTTTGGAAGTAAGCCAGGAAGCCCGCGATTGGCTGGCCGAGAAAGGCTACGACCGGGCCATGGGCGCGCGTCCGATGGCGAGGGTGATTCAGGACAACCTGAAAAAACCGCTGGCTAACGAGCTGCTGTTTGGCTCACTGGTTGACGGCGGTCAGGTGATCGTTGAGCTGGACAAAGAGAAAAACGCGCTGACCTATGCCTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCGGCACATTAAGTCGCTTGCGTGAAACGTCAAAACCGGCCTCAGGGCCGGTTTTTTTATGCCGATGTCCTGGACCCTTTTTTATTCCCCTTTTTTAAGCTATTGATTTTATTAAAGAGAAAATCTGGCGTGAAATTATGGTAGCAGAGAGGGGCTGTTGATTAATTTCAATGATAACAATATGGTAGGGTGTCGTTCGTTCA # Right flank : AAGAGCTTGCCCATACTGCGGTGCAGGCTAAAACGATTCTAAAGAATTTGCCAAAATAATAGGCTATTTTGCAATTTGCGATGAATGTCAACGTATTACCTCTAATATACTGTTTTTATAAACAGCTATCGACACTGAGCCACAGGATGTGACTATGCCCGCGAACTATATTGCCCCGTCGGATTTAAAAACGATTCTCCATTCGAAGCGCGCCAATATTTATTATCTGGAAAAGTGTCGGGTTCAGGTCAACGGCGGCCGCGTGGAATATGTTACGAGCGAGGGAAAAGAGTCATTTTACTGGAATATCCCAATAGCAAATACAACGGCTATTATGTTGGGAATGGGAACCTCCGTTAGCCAGGCTGCAATGCGTGAGTTTGCCCGAGCGGGCGTAATGGTCGGTTTTTGCGGTACGGATGGCACGCCTCTTTATGCCGCTAATGAAGTCGATATTGACGTTTCCTGGCTGTCCCCGCAAAGCGAATATCGACCAACTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1802998-1803505 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI535597.1 Klebsiella oxytoca MGH 42 addTf-supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1802998 28 100.0 32 ............................ TCGCCCCGCAGCGCCAGCCGTGCGGCCAGTAC 1803058 28 100.0 32 ............................ GGAAGAGGAAGCCGGTTCCGTGCTGTCTACTG 1803118 28 100.0 32 ............................ CGATTAACACCAAAATTTAATTGGTAATTAAA 1803178 28 100.0 32 ............................ ATACTTTCCGGCGGCATGCTGCCCGGGCGCCA 1803238 28 100.0 32 ............................ AGAATTCTGGTTATGAAGTAATCGGTGATTAC 1803298 28 100.0 32 ............................ TCAAGCGGCGGGACCGGGCTGTAGCTGTAGCG 1803358 28 100.0 32 ............................ TGGATATTCGCATCGCCAGAAAGATAATAAGC 1803418 28 100.0 32 ............................ AACGGTGACGATACTCAAACTCTCTCACTCAC 1803478 28 92.9 0 .........................TG. | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TACAAGGATGGCGTTGCGTCAGTCGGGTACAGGTAAAAAGCAGCCCCGAGCGGCTGATGCGCCGCTCGGTAAGAAAAGGCTGGCTGACGCAGGATGAAGCAAATGAGCGATTGCTTAGCATGCGGGGAGAGTCAACAGCGCTCCCCTGGTTGAATATGAAAAGCCTCTCCAATGGGCAGAAGTTTCCGCTATTTATTTGTCACGGTGAGCTGCTGGCGCAGCGCGTCGCGGGAACATTCAATAGCTATGGGCTGAGCCATATCGCGACTATCCCCTGGTTTTAGCATGTTGGTGAGAGTTTTTGACGAGTGCTAAAACAAACCATAACCGGCGCGGTCTTTCGCGCCGATTTTTCAATCGCTAATTAAAACCCTTTTTTATGATGAATCTCTATCTTATTGATTTTAGATAGTGATTTTATAAAAGTCGGAAAAAGGGTTGTGAAGAGGGGAAGGCGTTTTTTGGCTTTTTTATCAGATGGTTGTAGTGGTTAGGCTTCA # Right flank : ATCGTGGCGATTACGGGCGCAGAGACAGGGCCGTCAAAGCCGAAGAGGGAAGCGGCGTGAGAATAAAAGAAATGAAAAGACCGGGAATTATCCCGGCCTTCAGCATCTGGCGCGTTAAGCGCGAAAACGATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGAATGCGGATGTAGTTTTTACGCATTTTACCGGAAATATGCGCAGTTACCACGTGACCGTTTTCCAGTTCTACGCGGAACATAGTGTTAGGCAGCGTATCAAGTACGGTGCCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAGTCCTCTGGGGTATCACTACCGTAGTTTTGAACCGGCAAGATAATGCCGAAGTTCAGCAAGTATGTAAAGTTTTACGTCAAATCGCCGAAGTAGTTTTGGCGCATTGCCCGTAATTCACGCGGATAAACCGGGCGACAGGCGCAAACG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //