Array 1 17784-17010 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QQOC01000040.1 Neisseria meningitidis strain M21577 NODE_40_length_18477_cov_14.136839, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                           	Insertion/Deletion
==========	======	======	======	====================================	==========================================	==================
     17783	    36	  97.2	    30	........G...........................	GGACGGCGGTTCTAAAATATGAAAACTCAA            	
     17717	    36	 100.0	    30	....................................	CTGGAAGACTGGTAAGAAACGAGATGCACA            	
     17651	    36	 100.0	    30	....................................	CGATTTACCACCCATAAAACCACCTCAAAA            	
     17585	    36	 100.0	    42	....................................	GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA	
     17507	    36	 100.0	    30	....................................	ACAAATCAATACCATGAAAACCCCATGCGC            	
     17441	    36	 100.0	    30	....................................	AAAAACTTTTTAGGGGGGTCGGAAAAATGT            	
     17375	    36	 100.0	    30	....................................	AACCCATTACGCCACAAGTATTTCACAGCG            	
     17309	    36	 100.0	    30	....................................	TGCTGCAAGAGGAGGTGCAATCATGAATTT            	
     17243	    36	 100.0	    30	....................................	ATGGGCGGACGCTTTTTATGGTCGAGCGTT            	
     17177	    36	 100.0	    30	....................................	GCGATCTCATCAAGACGGCGGCAGGAATAA            	
     17111	    36	 100.0	    30	....................................	TCCATCAATGCCGCCATGACTGCCTGCTTT            	
     17045	    36	 100.0	     0	....................................	|                                         	
==========	======	======	======	====================================	==========================================	==================
        12	    36	  99.8	    31	GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT	                                          	       

# Left flank :   GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG
# Right flank :  ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.90,-0.40] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.68,4.5   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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