Array 1 1-192 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSCE01000027.1 Phocaeicola dorei strain OF04-10BH OF04-10BH.Scaf27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1 38 80.9 30 ---------...................................... CTGGTCCGTATTCACCCACAGCGTAGAAGT 69 47 100.0 30 ............................................... GTTATCTTTGTAGGGTGAAAGAGAAACCCA 146 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 3 47 93.6 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : | # Right flank : CAAAAAACAAAAATAGAGAAGAGAGCTCCAGTTGTGATTTGCTTTCAAATTAGTNNNNNNNNNNCTTTCAAATTAGTATCTTTGAACCATTGGAAACAACAGAATATATGTTACAAACTAATTACCAATTAGTTACACACATATTCAGGAATTAAAAACAAAGTTGTTATCTAATAAGAAATCCCGTTTCAGACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTTGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAAT # Questionable array : NO Score: 5.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 57752-59039 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSCE01000009.1 Phocaeicola dorei strain OF04-10BH OF04-10BH.Scaf9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 57752 33 100.0 33 ................................. TTTCTTCATTAATTCAATGCGATCTTTCAAGGT 57818 33 100.0 32 ................................. CCAGTGCACCAATATGGATATTGGATTGGCCA 57883 33 100.0 33 ................................. AAGGACGTATGGTAAACTCCCCCGGTGGCGGTT 57949 33 97.0 32 ................................G TTGATATCCGCTGTGGAAAGTTTGTTTTACCA 58014 33 97.0 33 ................................T GGTTTACAATTAAAGAAGCATTTATCACATCCG 58080 33 97.0 32 ................................C CATTATCCAATATCAAATATAACCGGCATTTA 58145 33 97.0 32 ................................G AATCAAGGGCTATCGTCTTGAATGGTTCGGTA 58210 33 100.0 32 ................................. AAGAATTATAATAATGGAACAACTAAGAGATA 58275 33 100.0 33 ................................. TATTTTTTATATCAATCAAAAATGTCTGCGGAT 58341 33 97.0 32 ................................C GAGAAGATTTATAATGCGGAAGGCAATGTGGA 58406 33 100.0 33 ................................. GATACAAACAGAATATTACAAAAACTGGTTCAA 58472 33 100.0 34 ................................. GACTTCGACCGTCGCAAAGAGTATGCTCTTCATC 58539 33 97.0 33 ................................T TCATCCGTAAGAAGATTAAGAGACAAGGAAACA 58605 33 97.0 34 ................................T GTAAATAAATTCTAGTTGTGTCTACACTCCCATG 58672 33 97.0 33 ................................G AAAAAACATCTGTATCCATTAGCCGTATGTTTG 58738 33 97.0 37 ................................T CCTTACTCATGGTCGGAACATCGGAAGGATTGACCAC 58808 33 100.0 32 ................................. AATTGCGTCTGTTCGGTTATAAGATATTCTCT C [58837] 58874 33 97.0 33 ................................C TGATTGTACTGAAATATAGGATGCCTCATGGTG 58940 33 97.0 32 ................................T TTGATTACTTGTTTTACTTCTGCTTCCATAAA 59005 33 84.8 0 ..........G.......A.A.......G.G.. | AA [59022] ========== ====== ====== ====== ================================= ===================================== ================== 20 33 97.6 33 GTCACACCCTACGTGGGTGTGTGGATTGAAACA # Left flank : ATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCGCCGTTTACGATGTGTGGCCAAGGCATGTTTGGATTATGGACAGAGGGTGCAGAACTCAGTCTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTTTAAAAGGGAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTAGAAGTAATAGGTGTTGAAACGGCTTATAAAGTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAGAGTATTTCTTCGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAACTTGCTGATTTATAATATGTTATTAGATATAGA # Right flank : ATTGTTCACTCGTCGGTCAAGTTTATGGAAGAACTGTAAGCATTCGGCCTCTTATGTATTTCTCTCCAGGCTTTTGATTTTGTTATGACTGGAAAAAACACGTACAAGCCCGAATGCTTATCTTTTGTCTGTCTTCTTTTGTTGTTTCACCTAGGTGACAATGCATTGGCACCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGATTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGTGTTTGCACGATAAGGCCTTGTAAATGAAGTAAATGGATGAACCATCATGTAGGACACATCAAGAAGGAAAATCTATGAGTCTTCAGAAATAATGGTAAAAAGCCACATACATACCAGTTAAGGGAAATTACGGATCCTTTTACACCACAAACCGTTGAAAATAAATGGTTTGCGGTGATAGAAACAAAAAAAGAACAGATGTCTTTTTAATACGCTATCTTATCCAATATCCCGTTCAAGTGTGCAATAGCCACTC # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.60, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTACGTGGGTGTGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //