Array 1 120937-118503 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNMB010000001.1 Bacteroides fragilis strain J1101437_171009_F3 NODE_1_length_684676_cov_17.4367, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 120936 35 100.0 35 ................................... ATAATGATTGTTTTTTATTGTTATTATTTTTTTTT 120866 35 100.0 33 ................................... AAGAGCCACAACGGGTTTTTCATCTCTCGTAAT 120798 35 100.0 37 ................................... ATTGAGGTTAATCCTTACTGGCAACTCACTCTGACAA 120726 35 100.0 34 ................................... TTTCCAAATGTATCACATGTTTCAAAAGTATTAT 120657 35 100.0 35 ................................... GGTGCGCGGCGTGGTGAAATTGCCTTTTTTTAACA 120587 35 100.0 35 ................................... AATACTCTTTTAAGTTCATCTCAGCAATTTCGTTT 120517 35 100.0 37 ................................... AACTTGGAACTCTTAAGATTACAAACTAAGTTCATAA 120445 35 100.0 38 ................................... AGTTTCCGAGAAGTCTCGGGTAGGCACGATAATCATCT 120372 35 100.0 37 ................................... TTTTTCAAAGCGCTGGTCGCGGCGGTCTTCAAGACGT 120300 35 100.0 36 ................................... ATTGACTGCTTAATAGCAGTAGTTTTGCAGCAATTC 120229 35 100.0 35 ................................... GCTTTCATTCTTGTCCATGGCCATAAATTCATATT 120159 35 100.0 38 ................................... ACTTACATAATAAGCAATAAGTGCAAACATACGGCTAT 120086 35 100.0 34 ................................... AACACCCACTCCGTTCGGAAGCTCAAAGGTAAAT 120017 35 100.0 35 ................................... AAATGCCCATACAAAAGCAAGCAGGGCGAAAAGTA 119947 35 100.0 37 ................................... AAAACTTGGTTGATGTCTTCGCTAGTGATCCCGTTGA 119875 35 100.0 34 ................................... ACATCAATCAGTTGCGCACCCTCGGAAGTGACTT 119806 35 100.0 36 ................................... AGCTTCGCGGATAGCTTCGTTAATTTCATTATATAC 119735 35 100.0 36 ................................... AAGTTCTTCTTCCAGCTCCTGCAATCCCTTACGAAT 119664 35 100.0 34 ................................... ATCTGATTTTTAGTTACATTGATGATTTTTTTGT 119595 35 100.0 36 ................................... ACTACTAACAACGCTGCAAGCGGCAGATTGCTGTAG 119524 35 100.0 35 ................................... GGTTGGGGATCTTCCTGTTCGGGGATGTCAATAAT 119454 35 100.0 35 ................................... TCATCATAGTGGAAGAGATATCCTAGCTCTTTTTC 119384 35 100.0 34 ................................... AATCGGTTGTGCCACCAAACTCTATGGGGAATAT 119315 35 100.0 35 ................................... CTGATGCCAACATATCACGAACAACGCCGTACAAA 119245 35 100.0 37 ................................... TGTAATGTACTTTTCATCGTTCTATAAGTTAAATTGT 119173 35 100.0 38 ................................... GTTCTACGCCACAATATAGGATCTTGCTCATATCGGCT 119100 35 100.0 32 ................................... GCCTGTGCCTGAGCATTTTTTTCGGCCAAGCT 119033 35 100.0 34 ................................... ATCGGTTATGCCACCGTATTCCTTTGGAAATATA 118964 35 100.0 37 ................................... ATAAGATGTTCTAAAGCCTTCGTGGCCCTTCGAATGT 118892 35 100.0 37 ................................... AACGCTGGGTTACGGAGAATACAATATCCCCAAACTC 118820 35 100.0 38 ................................... AATCCGAAACGCCTTTGTAAACGACGTTGTAAAGACCT 118747 35 97.1 37 .................................G. AATAGCTTTATCTGCCAGCCAGTTGTAAATATTCTGC 118675 35 100.0 34 ................................... AAATATGCCTGGGTACGCATATTAATTGTGTCAT 118606 35 100.0 34 ................................... AATGAATTGTACGGTCCCTTTTTTCATTTTTTTC 118537 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ====================================== ================== 35 35 99.9 36 ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC # Left flank : TTATATATCAACCTATACGAAAAAAGATAATTAAAACCGTCGAAATAGTCTAAACCTCTTGCGAAAATCAGAATTTGTTTAATTCATTGATTTTCTGCTTATTCTTTTAAATGAAAAATAATATATAATGTATAAAAGCTACGAAAGAACTAGCTTTTTTGTATATTAGTAAATCATTTGCGAAAAAAAACAAATAAGCAATTCGTTCTTTGACATAATACACTTATTATCTGATAATTATAAATATAAGATTAATCTTATTTTCGAAATAGGCTATAATATAACAAATGAAGCAGGCATTTGCGAATAATGAATCGATCATATCAAAGTGATAATCAATTAAATATCTCTATATTCTACAAATTATTTATTTAAATTACAGAAAAAAAGAGTACATTTGCGAAAATCAGTTCAACACTTCATCTATCTAACTGAATAATAAGTTATTATATATTTATACAGATAGAATACATATTTTATAATAATCTGATTATCAATAT # Right flank : CAATGCCCAGAAATACTGCAAACTTTCCTTATTAGCATGTAGATGTATTCCAATATAAAAATTTAACTACATTAAATAGAATAAGGGGAGAAGTTCAGACATAACGGCTTGGATAAGATCGTCATGGACTTCGGTATTGCTTTTAACATTGGGAAAATGATCAATAAGCAGGAAAAGAAGAAGAGAGGCAGAACTAATTTATTGGTAACTATTTTAATAAGCTGTGGAATAGCTTACCAAAAATACACAAAGGCGATAATACTACGGGGCTGTCCAAAAAGCAAAGTGCCCCCCAAAAGTCGGATAGCCCCTTTTACCATTGTTTATTTCGGTGAAAAGCCTCATATTACCGTTGTGAAAAATTAACAGTAATAGTTAAGATAGTATTTAGAGAGTTAACCTCCAGCCAAAATGTTCTTTTCCGGTTCGTTTATCGGAAAAAATATCTCCCAACCATCTTGTTCGTGTTGTAAGTTACATTGTAGATGCTTTGGATATTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 141598-140169 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNMB010000014.1 Bacteroides fragilis strain J1101437_171009_F3 NODE_14_length_142621_cov_27.574, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 141597 47 95.7 30 ...A......A.................................... TGCTGACGGTATAATTTCAGCAATCACTTT 141520 47 100.0 30 ............................................... TAGAACCATCACGAATCAGATTCCAATATT 141443 47 100.0 30 ............................................... TCGCTATTGCTTAAATCGGTAACTTTAACT 141366 47 100.0 30 ............................................... TGTTACTCGGCAGGCTTACAGCCGCCTCGA 141289 47 100.0 29 ............................................... GTAAATGCCGAAGTATCGACAGGCTGTGT 141213 47 100.0 30 ............................................... TTTAGGCCGCACAAGTGTAGGCTTTCCATT 141136 47 100.0 30 ............................................... GCACATTCTTAGAAAACTGAGTCTCACACA 141059 47 100.0 29 ............................................... AAAGATTCCATTCCTAAAGAGTCAAACTC 140983 47 100.0 30 ............................................... TTCCACAGCTGAGATGTCTATAGAACCATC 140906 47 100.0 29 ............................................... CATTCATCTGGGCGAACTGTACAGGTATT 140830 47 100.0 30 ............................................... TCCACAGCCTTTTTCAGTAATTGACAGCCT 140753 47 100.0 30 ............................................... AATGCAATACTAAAAGCCAAAGAAAGCATT 140676 47 100.0 30 ............................................... CTTAACGTCATAAAACAACAAGAGTTACAA 140599 47 100.0 30 ............................................... CCTGAGCTACAGAAAAAGACTTTGCCGATG 140522 47 100.0 29 ............................................... TCCCATTTAGAGTATGTAAATGCTATAAA 140446 47 100.0 30 ............................................... TGGCACAAGCAGCAGTAAGTAAAGGTGTGA 140369 47 100.0 30 ............................................... CACTCCGGTACTATATTCATTTGTGAAATG 140292 47 100.0 30 ............................................... ATGTAAAGTTATAATGGGGGATGAAAGGCA 140215 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 19 47 99.8 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : TTCAGGGGCGGAAAGAACAAAGCTTTGGCTTCGAAAAGACTTGTTATTTGGAAACAAAAGGTTTGATTTAACAGAGGGTTAAATCAAGTTATAGGAAGAGGAAAAACAAAAGGAGAGAAAGTATTGAGAATGAAGAAAACAGAGAAAAAGGGAGTATTTTCTGGGAAAAGGGATAAGTGCTGGTCCGAAAGGGATAGTTGTGATTAAAGCAAGTATGGGGGCAGGGAATTTTAAAAAGCAAGGTTGGGAATGGAAGCGGGAGGAGCTTACTGTTAAAGACCAAAGGACAAATTACAAAATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGC # Right flank : TTACTCCGCATAACATAATGTTCTTCAACAAGTTAAGAATAAATTAGAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTATTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGCCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCCCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //