Array 1 23378-23076 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBFJ01000006.1 Streptococcus mutans strain PKUSS-10 C175, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 23377 36 88.9 30 T.....AC.................A.......... CATGCAATTACATATTCAACTAAGGGGCCA TT [23368] 23309 36 100.0 30 .................................... CGTTCAAAACTTCTGCCCCAGCTGGCAAGA 23243 36 100.0 30 .................................... ATCATCAAATATCATTTGTGCCTCCTTTTA 23177 36 97.2 30 ...................................T CGGCACATATAATCCGTAAAGGCGGCACAT 23111 35 72.2 0 ..........CA.......A.TG..T-.A.T....T | A [23096] ========== ====== ====== ====== ==================================== ============================== ================== 5 36 91.7 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : TAAGGTTTTGGATGCCCAATACAAAGCAATCAAAAAACAACCAATACCTTTTGAAAAAGCTTTAGACAATATCTTTGGAAAAGATTTAGGTATCGAAACAACCGATCCGCTGGATGCACTATTGAAGTAGAAACACTAAATTAATAAGAAAGAGCCAAACCTCGAAAGTTTGGCTCTTTCTTATTGACTAAATCATGGTTAATGTAAACTTACATTTGGGTTAATTTTTTATTAATGCTCAAATATCACTGAATATTTAGGCATTTTCAATATGGAATCAAACTTGAGAAGCAACTGTCAGTCAATTTTATAGTAGAAATAAGGATGAACACATTAATTTGCTTTCTGAAATGAAAAAATACAGAAATATTTCTATATTTTTTCATTTATATTGTTAAAATATTTCGCAGATAGTGGTATAATAGAAACGCTTACAGTAAAGCAAATAAAAAAGCACCGAATCGGTGCGCACTTTTTCAAGTTGAATACGGATAAACCTT # Right flank : GCATTATGCGAAAGATTTTTAAATAAGCAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTCTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCTTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAACAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAGTAAGAGCAATATCATGTTCTGGAATTGGTATTGGGTATTTAATGGTTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTTTTCGTATTGACGTCCAAAGGTTTGATACAAATCCTTAGCTTTTATCACATTATCCCAATGAATAATT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 116727-115662 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBFJ01000006.1 Streptococcus mutans strain PKUSS-10 C175, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 116726 28 100.0 33 ............................ TAGGAAAGAGGAAACAATATATGGCAACTGTAG 116665 28 100.0 33 ............................ TGATCCAAGCGCTTTTCCTGCACCTTTGATTAA 116604 28 100.0 33 ............................ TATCTTGCGAGATTTCCACACAATCAACCGACA 116543 28 100.0 33 ............................ TAATCATTTTGTTACCTCGTTATTAAATTACAT 116482 28 100.0 33 ............................ TAAGCGCATTCAAGTGCTCGAAAGTTACGCAGA 116421 28 100.0 33 ............................ CTGACTCAAGAGGTATGCGGTCCGACGCAGTCA 116360 28 100.0 33 ............................ TTAGTGCTTAGCTTGCTGTTTAAGTATTCTAAA 116299 28 100.0 33 ............................ TGCCTCTCTAAAAGCTGACACTATAGCAACTTT 116238 28 100.0 33 ............................ ATATGCAAGTCTTTTATAATCGCTATCGTCGTA 116177 28 100.0 33 ............................ TAAGACCAATTCCTTATTTCTGATTCTATTATA 116116 28 100.0 33 ............................ TACGACAATATTTAGCTGGTGTGAATTTTTGAG 116055 28 100.0 33 ............................ TATGCACGCGCTAAATATATCCAATTAAACCAA 115994 28 100.0 33 ............................ TACAATCTCTAACTGAGTCTAGATTAACAATTA 115933 28 100.0 33 ............................ CAATTTGATTGACTACTTGTTCACGCTCTGCAA 115872 28 100.0 33 ............................ TGCACAACCATGTTGTTACCGTCAATCCGTTCA 115811 28 100.0 33 ............................ CGAACAACCATCAAAGAATTATGATCCTTTATC 115750 28 100.0 33 ............................ TACATGCATAGCGTTAATTGATAGCGAGGCAAC 115689 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 100.0 33 ATTTTACCCGCACGAGCGGGGGTGATCC # Left flank : GAAAATGAAAATAGCATCATAGAAATTGGCGCTGTCAAGATTGGCCCCTCTCAATTGGAAGAGTTTAATTATCTTGTAAAATATGATAAAATTCTACCAAAACAGATATCGAAATTAACAGGAATTAGTCAGGAACTTTTGGATCGTGATGGTAAAGACCTTCAAGTTGTACTTCAGGAATTTTTGAATTTTATCGGAAATCACGATCTTGTCGGATATGGGATAAATTTTGATATAAAATTTATAAATAAAAAGTTGAAAGAATTAAATCAGCCCTTATTGAAAAATCGAGTATATGACTTAATGCAATACGCTAAAAAAGAAAAATTATTTTTAGATAATTATAAATTGCAGACGGTATTAAAAGCATACGAAATAGAGGATGAGGTGCCTCATAGAGCTCTTCACGATTCTAAACTGATTTATGACTTGTCAACTAAAATGAATAAATTTTTGAAAGGGATCAATCAGAAGTAGCGGTTTTATTGGGATCTTTTAGT # Right flank : CAGTGACAACAACGAATCAGATACAGAAATCATGTTTTACCTATACATATAGACTTGTGATGTTAGACCGATTGAAATTGATTCTTTTGGATAGAAGGAAATCAAATATATATATTAAGTGGATGACAATAAAAGTAAAATATTAGATAATAGAGATTAAGAATTATAAAGAATTGGAAAATGTTTAGTCGTCAAACCTAAAATCATTATAATGATACGAATATTTTTTTGATCAATTTTGTGATAATATAAAGAAGCGACATGCTTACCAATTATTTCAATCTGATAGAGGTAATAATGAAACTTTTATATACCGACATTTCATACAACATAACAGAGATTTTGGCCGAGGAAGCACAAATAGCTGCTAAGGCTGGCAAGCGGGTCTTTTATATTGCTCCCAACTCCTTGTCTTTTGAGAAGGAGCGAGCTGTTTTGGAGACCCTGCCTGAGCGGGCTTCCTTTGCTATTACCATTACGCGTTTTGAGCAGATGGCACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCCGCACGAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched ATTTTACCCGCACGAGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //