Array 1 119917-120146 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079236.1 Bifidobacterium pseudocatenulatum strain YIT11027 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================ ================== 119917 24 100.0 27 ........................ TCCACGGTGCTTTTCCGGGTGTTTGTC 119968 24 100.0 27 ........................ TCCGGAGGTTCATTTTTGGTCTTTAAA 120019 24 87.5 27 ......A.....CA.......... CGCACGGCATCTATTTCAGTCTACGGA 120070 24 100.0 28 ........................ CTTAGGTGCTTATTTTGAGCCGCTTGTG 120122 24 83.3 0 C...........CA.......G.. | C [120145] ========== ====== ====== ====== ======================== ============================ ================== 5 24 94.2 28 TGTCCGTTTCTGGTGAATCGGACA # Left flank : GTATGGCGGTCGAGCAGGGCCGCGCGGATTTCTTCGCGGCTGACGAGCGTGGCCGGGTCGGGTTGGTTGTCGAAAGCGTGCTGGCGGGCGTCGATCTGCGCCTGCGATGCGGATGGTTCAAAAGTCATGGTTGTTCTCGTATTCTCGTTTTCCGTTCGTGCGTTGTTTTTGCCGGGTTGGTTGTGTTTTGTATGTTCTTGCGATTGTTACGCGTGCATTGCGCCGGTCGTAATCGTAAGAAACTTTGAAAGTGGTTCAGCCGCCCTGCACGAACGTGACGATTTCCAACGTATCGGTGCCCTTGAGCTGCGTCTGCGCACGCTGGGTGCGAGGCACGATCTCACCATTGAGCTCGACAGCCACGCGGTCGGCGCGCAGGCCCTTGCTTTCGATCAGTTCGGCCACGGTGATTGGCGTGGCGACGTTCTCTTCCTTACCGTTGATGATCATTGCGGTTCCCTTCTGTGTCTGTCGTGACACATGCTTTCCTGCACTCCGGA # Right flank : CTCAAGGTTGGTACGAAAAAAGGGTCGCCGAAGGAACCGTACCCTATGAGGTGGTGCGCCCCTCCGTGACCCTAATCACGCGATATTCGGTTATCGCGAACGGAAGATGAGATACGCCTTGCGGCGTGAACAACCCGTCTCCTTACGGCGGCATTACCCGCATCAAGTCCTCGGTCGAAGCTCCGTGAGCTCCCTCTCAGCCTTTCGGCTCCCGTTCGGTTGTGCCTTCATCTTCGCGCACGCGCCCGACAAGCTTGCGCCGGTTCACGTTGGGTTAGTCTTGAGATGAACGTGTACGAATCGGCTATGTTCTTGGAAGGAAGGGGAAGATGATGATGAACGGTGAGTTGGCAGGATTTACGATTCCTCGGCTTGGTATGGGAACGATGGCTTTGGCGATTGAGGGGCGTCCGGATCGCGATACCGCGATTCGTACGATTCATGCCGGTTTGGACGCGGGTGTCCGCTATTTGGACACGGCTTGGTCATATTATCTGCCG # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.10, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCCGTTTCTGGTGAATCGGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 1833629-1829768 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079236.1 Bifidobacterium pseudocatenulatum strain YIT11027 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1833628 33 100.0 36 ................................. CGCACGAGAGTGTATGCCGTACTCAAGGGTATGGAA 1833559 33 100.0 32 ................................. ACGTTCGGGGTGGAAGTCGAGATGGAATCCGA 1833494 33 100.0 33 ................................. GACGACGTGCAGATCACGATGGGAGACCAGAAC 1833428 33 100.0 34 ................................. CATTTTGTCCTCCATCTCTTGGTTTGGTTGATGC 1833361 33 100.0 36 ................................. AGTGTCTACCATGCCGCCGGCGGTGAGGTGATATGG 1833292 33 100.0 35 ................................. GTTACGCCGTCCGCTCTCCAATTGGCTGCGCACGA 1833224 33 100.0 33 ................................. ATCGCGCAGATACGGAAAATTGCGCATGGTGTC 1833158 33 100.0 35 ................................. CTCGCGCAGACGGACGACGTTTTCAAGGGGGTTAC 1833090 33 100.0 36 ................................. TGAAGGTGTACGGGTAGGTGTACTCGGTTTCCTTGG 1833021 33 100.0 35 ................................. GTCGTTTACAGCGGTATGCTTGCCGTCGTATTCGC 1832953 33 100.0 35 ................................. TCCAACGCCACCGGCTCGGTCATCGCACTGCACGA 1832885 33 100.0 34 ................................. ATGAGATTTTGGGCGGTGAGCTTGTTGGTTTCGG 1832818 33 100.0 33 ................................. GGGTTGCAACTGTTTGGACGCCTTGTTGTCGGA 1832752 33 100.0 33 ................................. CTGCCATCGTTGGTCAAATCGGCGATAACCGTG 1832686 33 100.0 35 ................................. ATATGCAAAATGGACGCCAAACACCCGATTCAAGC 1832618 33 100.0 34 ................................. GAACGGTGGATGGAGGAGCACAGGACCGCCGTCA 1832551 33 100.0 34 ................................. CTGAGCCTATCGTGTTAAGCTGTGCCATCTGATT 1832484 33 100.0 37 ................................. AGCATGCGGACTGGGATGATCCGCTCAAGCTTATCGG 1832414 33 100.0 37 ................................. ACCGCGTCGTTGACCATCTTCGTCAGATCCGGTGCGG 1832344 33 100.0 35 ................................. ATGACGTTCGGCGATGCGGCTGTCGGCGGGTACAT 1832276 33 100.0 34 ................................. AGTGGCGGTCTGGCAATCACGGAGAACAAAAACC 1832209 33 100.0 33 ................................. TCCCACCGCTTGACGCTCAAAACCTTGACGCCG 1832143 33 100.0 34 ................................. AGTCTCCTCGATGCCTTGGTGGGTGAGGCATGCG 1832076 33 100.0 35 ................................. TGGGAGCCATGGCTGGCCGCCAAAAAGACCAAGGC 1832008 33 100.0 33 ................................. CTTGAGGATTCGATTGCATTCGCGTCGGACGCG 1831942 33 100.0 33 ................................. AGTGGTCGGCTGAGGTTCGCGTGCTTGTACCAG 1831876 33 100.0 34 ................................. ACCATCGGCATTGCGCGCGCGAATCAAACCCGAA 1831809 33 100.0 34 ................................. GGTGAATATCTATGCGCATCTTCTCGCACAGAAG 1831742 33 100.0 34 ................................. GAATCTGCGTCCGTCACATAGTTCCCAACTTTCG 1831675 33 100.0 33 ................................. CAGCCGCTTGATGGTGGAGCACTACCGGCACGC 1831609 33 100.0 34 ................................. GTGCATGTGGTCGGCCCCGCATGGAACCTTCCAT 1831542 33 100.0 34 ................................. TGGTTCTGGTTGATGGTGTTCTCGATGTTCTGCT 1831475 33 100.0 34 ................................. CTGCTAGGTATCCTGCCATGATGTGTAGAGTGAT 1831408 33 100.0 32 ................................. CCAAACAGGGTGGATACAATGGCACGGCGCAG 1831343 33 100.0 33 ................................. ATCGTCTCGATTTCCTTGTAGAGCTTCGCGGCA 1831277 33 100.0 32 ................................. CGTGGCGGTGCGGTCCGCGATGATGTAGGCGG 1831212 33 100.0 33 ................................. CCACACAACACATCACCGGCACCTACGCCATCC 1831146 33 100.0 34 ................................. ATCCACGCCCTGAGCGGATGGTACATGCACGGCG 1831079 33 100.0 35 ................................. TTATAATTGGCCATGTCAGCAAAAGGAGTCCACGC 1831011 33 100.0 35 ................................. CATATGGCACTCCAGGCCTTCGCGCCGGTGACGTG 1830943 33 100.0 35 ................................. GAGTCCGGTGTGACGGTATGGACTGACCCCGATCA 1830875 33 100.0 33 ................................. GCGTGAATGGTGAAAAAGGGCAGGTGCATAAAA 1830809 33 100.0 33 ................................. AACACCGAAAGCACCGAACTCGGCACCGTCCAG 1830743 33 100.0 33 ................................. TCGGTGGCCTTCGCGTAGGCGTTCTGCAATGCG 1830677 33 100.0 36 ................................. TTGAATGTCCTTGAAGAATGTTTCCTTGCGATGTTG 1830608 33 100.0 36 ................................. AAATGGAGCGACTCGATCACATATCGGCGTCGCAAC 1830539 33 100.0 33 ................................. AACATCACCGGAAAACTCGTACGCACTCTACGT 1830473 33 100.0 34 ................................. GTTTACGTCACGGTTAATCTTTCGGACAGTGGCA 1830406 33 100.0 36 ................................. CTTTCTGCTCGTTTGAACGGCCGACGAGGTAATCAA 1830337 33 100.0 35 ................................. GTACAATAATTGTTGGTCAATGTCGGTCAATACTC 1830269 33 100.0 33 ................................. CCATCCCACACGGACAGTAGGGAATATGCTTGA 1830203 33 100.0 34 ................................. TCGAACACATCGTAGCGTCCGCGTGACATGTAGG 1830136 33 100.0 35 ................................. CCCGACAAGCGTAGGGGCGTGCACCGTTTTATGGT 1830068 33 100.0 35 ................................. GAAGACGGGCCGTATGCCTCCGACTCCCGCAACAT 1830000 33 100.0 34 ................................. ACGATAGCCATGGCGCTGCCCAGGATCATCGTCG 1829933 33 100.0 33 ................................. AGCTGGGAGCAGTGCGTTCGCGCCGTACAAGGG 1829867 33 100.0 34 ................................. GATACGATTAAGATGATTTTCGAGCGTCGTATCA 1829800 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 58 33 100.0 34 GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Left flank : CAATACCGATGAGGACAGCCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCATTATGGACGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGCAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCTGGGTTGAGCGTTTGAGTGTGCCGTCCGGTATTCAGAGTGTGTTTTCTAGCCAGCAGTATTGTGTTTTCGGCAAGGTGGCCGGTCTTGGAATGGTGTTTGTGCGAAGTGTAAGCGCTCATGATAAGGGACGTCTTTCGCACCTGAAAAACTATCGAAATCCGAATTGTGATTTTCGTGGGGCGTTTTGAAAACTAAATAATGGACATTAAAATGAGACAGAAAGCCAGTTGCTCGTTTTAGACATGTTGTTCGTCGTATCGGCGGTGTTGTTTGATATGCTTAAAGCTAGGCAGCTGGCTTGCGTCTCAAAAAGCGGACAAAAATGTCCAGCTGCACT # Right flank : CGGTGTCTGCATCGTTCCGGCCGCCGCGTGGATGTTGCTCTCCCTGTTTATGTCCAGTGTTCCCCGCACATGCGGGATTCCACATGTGCGGGACTGCTAGCAACGGAAAACCAGGGTTTTTGTCCGCTCGGGGCGACTTCAACGGTAATACGAGCAGGAACTGCGACTGGGTGTTTCGCATGGGGTCGCTTCTGAAAGCTATGTAAAAGAAATAGTGTATGTGAAAACGGTCGGGTGGGTGCGGATGCACGAGAAATTGGCTAACCTGTCGAATTTCTGTTTTACTTTGGTCGTTCATCTCGTGAGTGGTCGTCAAGCTAGACATATTGTGTCTCATGGGATGCAACATGTCATATGGAAATACATATGACTGGCGAATATCGCCAATGGTTCAGCCGGATAAAGGACCGGAACGCGAAAGCCCGAATCAGCGCGAGACTCCGATTGCGCTTCTAGATGGGGCGGCCGGTGGGTGACCTGCATACGGTTGGTGACGGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //