Array 1 550501-546029 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADZHM010000036.1 Shewanella algae strain CCUG-58400 58400_36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 550500 28 100.0 32 ............................ TTGATGGAATCACCAATGGCATCCATTGCTTG 550440 28 100.0 32 ............................ TTTAGGGCCTCTGAGTTCTGTTGAGTGTTCAA 550380 28 100.0 32 ............................ TTAACCCTGCAGAATTATTACCACCTAATGAA 550320 28 100.0 32 ............................ TGGAAGGTCTTATTAACCCCGTCAATTGGGAA 550260 28 100.0 32 ............................ AAACTAAACGAGATGGGGCGTAAGTCAGGAGT 550200 28 100.0 32 ............................ ATACCAAGCCGAGGCTGTGGAGAACATAAAAG 550140 28 100.0 32 ............................ TGCTTAGCTTTTACAATGCCAAGAGCTATTTC 550080 28 100.0 32 ............................ TACATGAGTTCGCCCATCTTTACGCATCCTGA 550020 28 100.0 32 ............................ CTACATTGAGCGATGGGTCTATGATTGCCGTT 549960 28 100.0 32 ............................ TGTCTGGTGACCCACATACTCAACAGCACTAA 549900 28 100.0 32 ............................ ACTGCGCGACCTTAGTGACGAGCAAGCGTCTC 549840 28 100.0 32 ............................ ACCGTCCTGAGTCCTAACCCCCTGAGGGCAGG 549780 28 100.0 32 ............................ TGCAAGATGGCGCATCACTGCCGAAAGCTGAT 549720 28 100.0 32 ............................ TGTAATTCATGTTTTAATCCTGAGTCAGTAGA 549660 28 100.0 32 ............................ AAGTGTCTAAGTCTGTTGACACTGGTGGCCTG 549600 28 100.0 32 ............................ TTTCAGTGGGAGGTTGCGCAAAACTGTCTAAG 549540 28 100.0 32 ............................ TACCATTAATATTAGACACCCATAGATATTCA 549480 28 100.0 32 ............................ TTCATCGTCAAACGCGCCAGTTTCAACGATTC 549420 28 100.0 32 ............................ ATCATTCTGGAAAGTACCTGCATTCATAACGC 549360 28 100.0 32 ............................ TGGCTCGAATATTATTTCTTCGCTGGTCAAAA 549300 28 100.0 32 ............................ TCCAAGCCTATCCACCCACCATCATTCACTAA 549240 28 100.0 32 ............................ TTTCAGTGGGAGGTTGCGCAAAACTGTCTAAG 549180 28 100.0 32 ............................ AAACGAAAGTATCCCAAGGGGTAAGTGAAGGG 549120 28 100.0 32 ............................ ACCATAACCGCCACCAAATGCATACGCATCCT 549060 28 100.0 32 ............................ TGCTTGAGCAACTTTTGAAGCTCGGATGTTGC 549000 28 100.0 32 ............................ AGAATGAGGCTTCAATGCCTGAGCTGATGAAG 548940 28 100.0 32 ............................ AGGTGAATGAAAACGCATTCATCAAGTCACTG 548880 28 100.0 32 ............................ ACAGCCACCAAAAGGAACTGACAAATGAAATC 548820 28 100.0 32 ............................ ACGCAAAAGATATAGACCTATGGATTGATGAT 548760 28 100.0 32 ............................ AAAGCCCGAGGTGAACATGACAATAACTGAAA 548700 28 100.0 32 ............................ TGTTGTGTTGCATCTAGGTAAATCGTAAACAC 548640 28 100.0 32 ............................ AAGCGGATGCAGCATTTCTCGATTAATTTTCT 548580 28 100.0 32 ............................ ATAGTGCTAAGTTTGTTTAAGTAGGTCTTGAA 548520 28 100.0 32 ............................ AGCAGATGAAACGTTACCCAAGGTACCAGGCT 548460 28 100.0 32 ............................ TGCCATGTCGGCTCCTAATACCAGATTGTTAC 548400 28 100.0 32 ............................ GTATGCAAGAGCACGTGGACTTTATCAAGACT 548340 28 100.0 36 ............................ TTTTGGCATGTTGCTGCGAACGTATGCTAGCTAGCA 548276 28 100.0 32 ............................ ACTGGTGACGGCGAGCGTAAAAAGGCGATTTC 548216 28 100.0 32 ............................ AATTCAGAATTGGAAGACCTGAAAGCACAAGT 548156 28 100.0 32 ............................ AACATCGCCGGGTTAAGATGGCGTGACGCAGA 548096 28 100.0 32 ............................ TTTAAGGTCGGTGATAACGCTACTCTGAGGCC 548036 28 100.0 32 ............................ AATGCCACCCTCACCTGGGAGGGTGATAACGG 547976 28 100.0 32 ............................ ACGTCAGACACCCAGTAAAGCAGCGTCGAACC 547916 28 100.0 32 ............................ TTGCTCAAAGCTTGAGGCTAGCGCATGAATAT 547856 28 100.0 32 ............................ TATTGCGCGTTCAACACTGGCAATCTGGTGGA 547796 28 100.0 32 ............................ CGCTTTCTTGGATGCTTCCTGCTCGGCTTTCA 547736 28 100.0 32 ............................ ACCAAAGAAGCCGCCATTGCACACGCTAAGGC 547676 28 100.0 32 ............................ GCCTCCATTGCCCCAGATGCGCCCAATGCTAC 547616 28 100.0 32 ............................ AGTAGAGCACATTTACCTTGATGTCGAGCAGA 547556 28 100.0 32 ............................ AGAGCAAAAGAAGGAGCTTGGACTATGAAACA 547496 28 100.0 32 ............................ ACAACAACAAACAGCACAATCATAAACACTGA 547436 28 100.0 32 ............................ ACGACATAGATTCTGGGCCGAGCCGAAGGGGA 547376 28 100.0 32 ............................ TGATACCCAGCCACCATAAGATGATCCGCATC 547316 28 100.0 32 ............................ ACACTTAATCACTGCCCTGGTCACATGTCACC 547256 28 100.0 32 ............................ ACCAAGCAAGGGTAAGCCAAAAGAAATGCAAG 547196 28 100.0 32 ............................ ATGAGCGGACGGAAACAAGATTTTGCAGTTCA 547136 28 100.0 32 ............................ AGTTAGAAGGCACAGACGGGGCCGCCGACCTT 547076 28 100.0 32 ............................ GAGCTGAAAAACGAGTGTATTGCTGACGTTGA 547016 28 100.0 32 ............................ CTTAACTTGATTGGTTTATCACAGTCCACACA 546956 28 100.0 32 ............................ TTCCGTCAAAAACAGAACACATTTACTACGAT 546896 28 96.4 32 ....C....................... TTGTAGGCCTTGAAAGCAGATTTCTTTGAATC 546836 28 96.4 32 ....C....................... AGCAGATATACGATCTTCAACAACTTTCAAAA 546776 28 96.4 32 ....C....................... AAAGAACCGTGGAATGACTCATTCAATGAAGC 546716 28 96.4 32 ....C....................... CTACACTGTTGAGGCGTTAACCACGCCGTCCA 546656 28 96.4 32 ....C....................... ACATGGTTGAGAACGCCGAGTATTACATCACT 546596 28 96.4 32 ....C....................... CTCAGCCGCAGGCATATCCACAGGTTTCTTAA 546536 28 96.4 32 ....C....................... GTGAACGACTGGGGCCAGGTCACTGCATATAA 546476 28 100.0 32 ............................ AACTGAGGCCGTCAAACATCGTGGACATAGCT 546416 28 100.0 32 ............................ TCATGTGGACGATGATGACCCCATGGGTGAGG 546356 28 100.0 32 ............................ GAGTATGTTTATCCATGTAGCCGAAGCCCTGG 546296 28 100.0 32 ............................ AACCCAATGGTTTGGCGCAGCTGCGCCGCAGT 546236 28 100.0 32 ............................ TCGAAGTGAGTACGCTGACAGACCTTATGATT 546176 28 100.0 32 ............................ TACCGGGGTGTTGTCGGTGGCTGTGGTAGTGA 546116 28 100.0 32 ............................ ATTCAAGATGATATTGCTATTGCTGCCAGATA 546056 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ==================================== ================== 75 28 99.7 32 GTTCACTGCCGCCCAGGCAGCTTAGAAA # Left flank : CGAGTGATGTTTCCTACGTGAGTTTTGTACGCAAACAGGTGAAATCGCCTGAGCGGATTGAGCGGGCTATGCAGCAAAAGGCGGCATTATGGGCTGCAAAGTCGGGCAAGCCGCTGGCCGAGTGTTTAACCGATCTTGAAAAAAGCAAACCGACTGGGCAGTGTGATTTGCCATTTATCTTCTTGCACAGCCAGCAAACGAAACAACGTTCGCCGGACAAAAACAGCAAGTTCCCGCTGTTTATCGAAAGATATCCGCAAAGTACACCTGTGGATGGGCAGTTCGATTGCTACGGGCTGAGTCGTAAAGTTAATGGTATTGCATCGCTTGGAACAGTACCGCACTTTTAAGCATCAAAGGGTGAGTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTATATACAATCAGTTACAACAGGTGGTATTCAACAGGGTAAAAATAGGTTTTTTATCCTAACCACCTGTTGTGACTTTCTTTTATTGCTTTATTCTATT # Right flank : GTTCTTCTGGTGAATTACCCTTGAGCCTTGCCGTGCTCCCTCCACAACGGGGATTTATCACTCGGCCCCAGCAGTATCCGAACGTCCTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAGGAGATCTAAATAGCGGCCCGGCTCAAGGCAGCATATCTACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGATAACTGGAAGCGTCCTGCTCTGGGCGGGCGCCATTCCAGGGTTTGGCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCGATGTGTTCATTCGCCACGCTTTGGCGCAGGCTGTAGGTGACGCCTTTCAAGGGGGAGCGGATAAGCGGGGCAGTGTAGCTGACCGCGACTCTTTGGCTGCAGGCGACCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGTTCGAACAGGGCCGCCAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCCCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //