Array 1 230614-230979 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPDJ01000006.1 Streptococcus salivarius strain F6-1 contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 230614 36 100.0 30 .................................... TATTCTCCTAGAAATATCCAACTAATAAAG 230680 36 100.0 30 .................................... CATCAAGATTGCCTGCAAGACCACGGGCCT 230746 36 100.0 30 .................................... AAAATGATACTAGTTATGCTTACTATGCAA 230812 36 100.0 30 .................................... ATTGATGATAACTTTATCAAAACGAAAACG 230878 36 97.2 30 ...................................G TGAGCAGTTTTGGACGGAAAGCATAACCCC 230944 36 91.7 0 .......................A..........GT | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 98.1 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATAGTTTTATTTCAGAGGAATCTTATGATAGTTTTTATAAGCAAATTGGTCAGCTAGTCAAAAAATATCCAAACCTGACCTTTATTTTGTTTCCTAGTGATCAAGGCTATTTAAAGATTGATGAGGAAAATAGCAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATATTGAGTTTATATATGAAAGGGTAGTGCAACACTATCCAAGCAATAATTTTCCAACCAGAGACGGTTTTAGGATGTCTTTAGAGATTGTGACGCCTTATTTGTTAACAAAAATGACTAGACAACCTAGTCTCTCACTTGTTGATTCAGTGATTTTGAATATCTTAAATCAGTTATTCCATTTTAATTACCGTATAAGATATTCACAAACTCCTGATGAGGAGTTATTACATAAATTTTTAGAGAGTAAGAATTGACAATGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAATCGTCAAAATTTCATTTGAG # Right flank : TTTGATTGATTCAACTTAAAAAGCCAGTTCAACTGAACTTGGCTTTTTAAAATACGCGATAAACATAAGGGTTGTCAGGTTGACCGACCTCTTTAACCTCAGTCAAATTGAGGATAGGGAGGCTCTGTTTGAGATTTTGATAGTAATCCACAGTGATGGTACCAGTGACTTTTACCCAGGTATTATCCTTGAAGGTTTGGTCACTTCCTCTCGTCGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATAACCCTTGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACAAAATCGTTAGGATAGAGGTAGATGAGCTCCATAACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGTTCCTTGGTCATCTCCTTCTCATAAGCAGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAGTACTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 203570-201085 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPDJ01000008.1 Streptococcus salivarius strain F6-1 contig8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================================================== ================== 203569 36 97.2 38 .............C...................... TTTTGACTGGGAGTCAAAGTAAATTCATAAAGTTTTGT 203495 36 94.4 37 .............CA..................... GCCTGCACCTTTCTATTCGTCTCTGCACGGTCTAAGT 203422 36 94.4 37 .............C.......G.............. TTTCCGTTAAAATTAATAATATTCTTGTGGATTTCTC 203349 36 91.7 36 .............A...T.................T ATGCCATCTTTATCTTTATTTAATTTATTTAAATCA 203277 36 88.9 34 .............CC..........A.....A.... TCGTTGTCATTTATTTCTTCCTCCATGAATGTTT 203207 36 100.0 36 .................................... TCTGCGATGTCCCCTGAGATGATGAAGTCATCTACT 203135 36 97.2 37 .............A...................... ATAATATGCTTGATAGCCACGATCTGACTGAATAATG 203062 36 97.2 94 .............A...................... TGAATAATGACAGCCTCAATGATTGCTGGTTCTACTGGATATAACCCTATCTACCTCAACCAAAGTTAAAATCCCTTGAGCAATGTCTTTGATA 202932 36 100.0 37 .................................... ATACTTATTGAGTGCTGGACGTACAGCCGCTAGGATG 202859 36 97.2 37 ................................T... AAGTCTAGATTAATTCCTGTTACGCTGATTAAACCTG 202786 36 94.4 39 .............C.....T................ GTTCATGTTCAATCGTCCTATCCCAGTTTTCGTCTGGGT 202711 36 88.9 35 .............CC......C..........T... TCCGTCTTTGTCTCGCCAAAAATCAAGCATGTCTG 202640 36 97.2 35 ..............C..................... ATTTTGAAGATACTGTCAAAGTTTGCATCCGTATT 202569 36 100.0 38 .................................... GTGCTGCTTGTGGTTCCGTTAATTTCGTCGGTTTCAAG 202495 36 91.7 37 .............A.................AT... ACTTCATGGATACCATCTTTAATTCCTTCAGCATTTT 202422 36 86.1 38 .......C.....CC......CA............. TTTTGTTTTCAGTTCCTCGAACAAATTAATCTCTGTTG 202348 36 91.7 37 .......C..A...C..................... AGTGCTAGCATTAGGGTCTACAGAGTAGTAGCGATAA 202275 36 97.2 36 .............A...................... AGTGATAACGTCATCACGATGCAAATCGGGTTTTCG 202203 36 88.9 39 .............CC.......A.........T... GCTTCATCTTCAGTATTGAACAAATCATGATTAATTTCT 202128 36 100.0 36 .................................... ATTGAAACTAGGGTATGTTTCACCAGACGGGTGATT 202056 36 94.4 38 ..............C......C.............. GGAGGGTAGACATTAATTAGGGCAACATTATATGATTT 201982 36 83.3 34 .......C..C..A.T......A............A CCAAATTTCGCAAATTTTTTAATATTATTGTTAG 201912 36 88.9 36 ........T....A......T...........T... TTTGCGCGACGAGCTTCAGCTGTTTCTTTTGTTTCA 201840 36 88.9 33 .............A.......CA.........T... TTTGGCACGAATTGGTCAATGTCACGGAATGAG 201771 36 88.9 36 ..............C......C...A......T... TTTGTACCTAGATAAAGCAGAGTTGCACAGTTATTT 201699 36 86.1 35 C..........T.........CT.........T... TCATGTTATAATCTCCTTGGATGTTATTTCTAGCG 201628 36 91.7 36 .............C.......G..........G... TTGCAACCACAAGGCTTTCTGTTTTTTAGTCATTGG 201556 36 97.2 37 ........A........................... CCCATAAGTGCATTTTCAGCGTCGTGGTAAGCAACGA 201483 36 94.4 34 .............C.G.................... TCGAAATAGACGATTACTTTATATTTCATAGTTC 201413 36 88.9 35 .............C...T...C..........G... ATACGCATGCTCTTATCTTCGCAAACTATTTTTTT 201342 36 88.9 38 ............CC....C.T............... CCATTTAAAGATCCATCATTTTTACCTCCGCCAACTGG 201268 36 97.2 39 .............A...................... TCGATGTTTGAATCACCGTGTGGATTGTTAGGATCTTTA 201193 36 88.9 37 ....C........AC......C.............. ACTGCTGCAACTAGGACGATGCCATATTTTGCAATTT 201120 36 77.8 0 .......C.....C................TTTTTT | ========== ====== ====== ====== ==================================== ============================================================================================== ================== 34 36 92.6 38 GATATAAACCTATTTACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTGTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAATCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATTCGAAGTAACAAACGTAGACTTAAACTCTCCAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGATTTGTCAAGAAATGATTATCAGTCTTTCCTTAAGGATATCGAGGGCTTCTACAGGGCTGATGAAGAAGACAGCATAATCGTATATGTGACAACTAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCCGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGGCCTTCAATCATATGGTACAATATAGGTAGTGTTTCCAGTAGGTCCTACATCTTGTGTCTCTAGTAACTGTCTAGAGCACAAGATATGGG # Right flank : GAAAATTTCGAAAACAGTCTTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGGTGAAAAGTACTTTCAGCTATTGGGTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTAGCTGTTAAATTTCATGGCTTCTTGATGGAACAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACCAATCCCTATGCAACCAAGGTAATCCAAGGAAGAGAAGACACACAGTGGGTCGTGCATTTACTTACAGATGACCTCGAGGATAAAGTGTTTATGACCTTATTAAAGATTAAAGAGGTGTCCTTAAACGACTTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAAGAGTTGGGAGCAGATAAACTGTTGGAGATTTTCAATAGTGAGGACAATCAAACTTACTTTTCAATCATTTTCGAAA # Questionable array : NO Score: 4.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:-0.13, 8:1, 9:0.16, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTATTTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [40-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //