Array 1 26065-24650 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPJF02000011.1 Mycobacterium heckeshornense strain CTRI-134 NODE_11_length_161321_cov_28.1321, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 26064 36 100.0 38 .................................... TATAGGGGCGGGCACGACCCATCCCCAGACGCCCGCAC 25990 36 100.0 39 .................................... TCCGGGGCATGCTGATCGAAGTCGCCAACCGATACGCAC 25915 36 100.0 37 .................................... GTTGCCAACGAGAGCGAGCTGGCGTGCGGACTTATTG 25842 36 100.0 38 .................................... TCGACTGCGCTCCCACATGCGATCAGACCCCACCGCCC 25768 36 100.0 36 .................................... GGGACCGGCGCGCCAGGTTCACGCCGTCACTGAAAC 25696 36 100.0 37 .................................... CTGTTAAACCCATTCCACCAGGGTGTAGCCGTCGCCG 25623 36 100.0 36 .................................... TTGTTACGCCGCGGCAAAGCCCGCGCTGCCGCGAAC 25551 36 100.0 37 .................................... CTGTTAAACCCATTCCACCAGGGTGTAGCCGTCGCCG 25478 36 100.0 36 .................................... TTGTTACGCCGCGGCAAAGCCCGCGCTGCCGCGAAC 25406 36 100.0 35 .................................... CCGCACAGCGGCCAAACAGTCCGAGGACATCAAAC 25335 36 100.0 35 .................................... GGCGTTGGCTCTGAGTTGTTCGGTAAGGATGGCGG 25264 35 97.2 36 ...............-.................... CTGTTGTGTTTCACCGGCCCACGCCACCTAACTGGT 25193 36 100.0 39 .................................... TCGATGAAGGCGGGATCACCGGCTGGCCCACCGATCCCG 25118 36 100.0 36 .................................... GAGATCCGGCAGGTGGACGAAATGTATGAACCCAAG 25046 36 100.0 37 .................................... GGCTCGATGCCGTGCGACTTGGCGATTCGCGACGCGC 24973 36 100.0 36 .................................... GGCGTTGATCACGCTGACCCGGTGATGCCAGCGCGC 24901 36 100.0 37 .................................... GCGCCTGAGGCGCGCGTTCATCCGCTTCGGACGCTGA 24828 36 100.0 35 .................................... GTCGATGGTGTAGATGCGTGCGGTTGCGGCGTTGG 24757 36 100.0 36 .................................... CGCAGCAGCCGTTGAACCTGTCGCCTTGTCTATCGC 24685 36 97.2 0 .......................A............ | ========== ====== ====== ====== ==================================== ======================================= ================== 20 36 99.7 37 ATCTCCCAGGTGATTTCGCCTGGGCTCCATTGCGGC # Left flank : TCGATGGTCGACGAGCACACTCGCGAATCGCTGCTGAACATCGTGGAGCGCTCGATTACCGGCGAGCGTCTCGTCGATGAACTCGAGCGGGTGTTCGCCTCCGCCGGTGGACCGCCGCTGGTGCTGCGCATGGACAACGGCCCGGAGATGATTTCGCAAGCGTTGCAACAGTTTTGTGACGGCACAGTCGGATTGTCCTACATTCCACCCGGAGCGCCGTGGGACAACGCCTACATCGAATCGTTCAACAGCAGGCTCAGGAAGGAGTGCCTCAACCGCAACCACTGGACCAACCTGCTGGAGGCCCGAGTAGTCATCGGTGACTTCAAGCACGAACATAATCACCGGCATCGTCACTCCGCGCTGGGCTACCTCACCCCGGCCGAGTACGCTGCCCGATGCAGCCACACCCACACCCCTGTGGCCTGCGAAATCAACTGAATCCAGAACAACAAAACCCGACTCTAGAACCGGGTGGACTCAGTATCGGGGACTCGCCA # Right flank : ACGCGGGAGAGTGAGCGTCTGTGCTTAACGGATTCGCCGTTCGCTGCGGCTAGGGGGAGGACTCTTACCCAAGAGTGGTGACTTACAAGCTTCGGCGGGTTCCGTGCTCCCTCAACATGCTCCCGCCATGTTCGGCATCACTGTTACTCTCCCGGTGTGCCAGCCGAATTCCCTGGTTTCGGCACGCGGTTGCGGCTGCTCGCCTCTGGCCCCAGCAGCTCGCCGTCGGCTGCGACAAGACGGGCCCGGAGCTGGCCGTTGAGGTCGCGTCGCCGCTTCCCGCAAGACCTTCGGGTGGGCATCGACGCTGTCGACCCTGGCAACCGCGGTCGGATCCGGGCAAGGACACGGGCTCCGCGGGCAAGCGTGTCGCGGCGCGGGGCGCCGCATATAGCCGGGTCACCGCGATGTTTACCGATAATGACAAGGGCAACGCCGAGCGGTTTCCGGCACCTGGAGCGCTGATGGATGCCGCGCCATTCGGGCTGGAGGGCTGTTGC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTCCCAGGTGATTTCGCCTGGGCTCCATTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 27391-30052 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPJF02000011.1 Mycobacterium heckeshornense strain CTRI-134 NODE_11_length_161321_cov_28.1321, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 27391 36 100.0 35 .................................... ATCGCGTTGCCGAAACTTTCGGCACCGCCGCTGCT 27462 36 100.0 36 .................................... GGGCTCTGGACTCGGTGACCTCAACGGCGATATTGA 27534 36 100.0 38 .................................... CGGTCGAAGAAGTCGACACCGCCGGCGATGTGGTGACG 27608 36 100.0 36 .................................... ATCTTGGTCGCTGGGGATGAAGAATCATGTGGATGG 27680 36 100.0 36 .................................... CCTCACGGGATTTTGACTCTTAACTGTAGGAGCAAT 27752 36 100.0 37 .................................... GGCCATCAGCCGGAATCGAACTGTACAGCGTACCGCT 27825 36 100.0 36 .................................... TCGATTGTGGTGCCGGAAATCTGTGTGACGGAACCG 27897 36 100.0 37 .................................... GAGGTACGCCAGACACGGACCCGCGCCATTACCTCGA 27970 36 100.0 37 .................................... AGGAGCCTAGAATGCCCGCGTACAAGCTGGTGGTGGT 28043 36 100.0 36 .................................... CTGATCCTGACAGTGCCCGCATCGGAGATTACTCGG 28115 36 100.0 40 .................................... TCGGCCCCTCAGTGTGGTGTGTCAGCGCACTCATCTGGCT 28191 36 100.0 36 .................................... GGCCGGATCCCGCTCCGGCCCGGGGATGGTGTTGAG 28263 36 100.0 36 .................................... CCGCGTCAACGAGCAATGGCGCATCTGTTTCGTGTG 28335 36 100.0 36 .................................... CGGCACAGAAAAAAGCCTCGGCGGTGTACCAGTCGT 28407 36 100.0 38 .................................... GGCGACACCATCAGTATGGCATGCCGTGCACTATCACA 28481 36 100.0 39 .................................... CTGGTTGATGGCGGTATCGAGAGCTTCCAGGCCACGTTC 28556 36 100.0 37 .................................... GCGCGCTGCGCATCCAGTCGGGGCTGTGGGAGTTCGT 28629 36 100.0 38 .................................... CGGCACCGGTGTCGGTTGCCGACCCGGCCGGCGGCGGG 28703 36 100.0 35 .................................... TTGAGAGGCTTGCCAGGGCCGGCGTCGACGGTCTC 28774 36 100.0 37 .................................... GTTCTGCGCTGGGCGATCACTCAGTTGCAACGGACGT 28847 36 100.0 38 .................................... CTGCTGCGCCGTCACGTCTATGAGTTCGGCTTTGAGAC 28921 36 100.0 38 .................................... GCCCACGACCCGAGGTTGACAGCGGGAGTCTCATCTAT 28995 36 100.0 37 .................................... GCTCGTGCATTCGGGGCTGTACTCGGTGCAGTTGCAG 29068 36 100.0 35 .................................... CCCGCCAAGAAGTCGCGGACGCACGCGCCGACCTC 29139 36 100.0 36 .................................... CTGATCGTCGGCCCAGCGCACAGCCCGCTCAAAATT 29211 36 100.0 38 .................................... CCGGTTGGTGACCCGAAGTCGCGGGAGGTCCTAGACCG 29285 36 100.0 37 .................................... ACCGAAAATTGGTGCGGCGCCGTTTGTTTTGCGTGGC 29358 36 100.0 39 .................................... CGCGTCGGTCAGCGTGCCGTCCGTGGGGATCCGGAGCGT 29433 36 100.0 37 .................................... CTGCGTCTGGATCGCGGCCTGCACTTGCTCCAAGGTG 29506 36 100.0 37 .................................... ATCAACAAATCGGCTTCTGACTGTACCCGAGGTAGCT 29579 36 100.0 36 .................................... GAATTCGTGTGCGTGGTAGAGCACGTCGGTGTAGCA 29651 36 100.0 37 .................................... ACGCGTCATCGTTCAAGCGGGCCGCCGACCAGATCGA 29724 36 100.0 36 .................................... GAAAACGCCGACGACCGCCTGCACCACCCTGGCTAG 29796 36 100.0 38 .................................... CCAGTTGCTCCGGCACGCTGACCAAATTCGCGGGATTG 29870 36 100.0 37 .................................... GCACGGCATCAACGAAGATGTTTTGCTCAGGAAAATC 29943 36 100.0 38 .................................... CGGTACCGAAAGAGCAGACGCAGCGGCAGAGCATCGCT 30017 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 37 36 100.0 37 GCCGCAATGGAGCCCAGGCGAAATCACCTGGGAGAT # Left flank : TAGAACGAGCCAGCCCAACCGCCTTGCACGCCAACCGCTCCGACATGCTCAACACCTCTTTGAGCATGTCCACGGCGCGACGCTTGGCGGCCGGGCTCAGAATTTTCCCTTCGCAACCTCCCGCAACGCATCCTTCTCCAACTCCGCCTCGGCCAAAAGCCGCTTCAACCGCGCGTTCTGCTCCCGCAACTCCTTGAGCTGCCTGGCGGCATCGATATCCATCCCGCCATAGGTGCGGCGCCAGTTGTACAGCGTCGCCGCCGACACCTCCAGCTCGGCGGCGATCTCCTCACCGGTCTTGCCCGCCGCGGCCAGCTCGTCCGCGCGGCGCAGCTTGCGCACGATGTCCTCCGCGGAATGCCGCTTCCGACCACCCATGTGTTTCATCATCCCTTCCAGCCCCATCCACGGGGCCACAGGACTCTAAAACAAGGCGGACTCATTCACCGGGAACACCCTAAGATGATCAACGCAAAATCGAGGAACTTGAGAGCCAGATC # Right flank : TAGCAGGAGAGATTTATGGCCTTTGACCTGCAGCGCTCCGAAAGTTTGCGAGCGCTGCCATAGCTGCGCGCAGAGGTTTCAGATATTGAGTTATCAAACAGCCACAATACCATATCTGACCTCGGCGCGAGTCCTGATAGGGCAGTACCTAGCTATTTCAGCGCTCGCAGGATTCCTATATGATTGTCGGGCCTCGCGTCGGCAGCTCGGCCCGTCCGCTAGCTCCTATAAACTCGAAGCATTCAGTTCCCCGAGAACTCGGATCACCGAGGTTTACAAAGACCAAGGAGTCCACAGCGTGGTTCACTGCCTTCCCCAGTTCAAGGCACATAGAATATTTCTCGCCTTCATCAAGATCACAAATAAATACAGAGTATTGGAGCGCGTATCCGTATTTCTTGGCAATCGAATGGACTTCACGCAGGCGGCGGTCGTCGCGGATGTCATAAGCTACGAGGTAGCGGATTCGCTTCATCGGTTACCTGGTGATGATAGGCGTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATGGAGCCCAGGCGAAATCACCTGGGAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //