Array 1 107822-106158 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMMZ01000088.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 21381 SEEH1381_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107821 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 107760 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 107699 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 107638 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 107571 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 107510 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 107449 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 107388 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 107327 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107266 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107205 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107144 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107083 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107022 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 106961 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 106900 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 106839 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 106778 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106717 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106614 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106553 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106492 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106431 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106370 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106309 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106248 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106187 29 96.6 0 A............................ | A [106160] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125202-124077 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMMZ01000088.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 21381 SEEH1381_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125201 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 125140 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 125079 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125018 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 124957 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 124896 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 124835 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 124774 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 124713 29 100.0 31 ............................. AACAGGAACAGGAAAAAAAGATTTGTCCGGT 124653 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124592 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124531 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124470 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124409 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124348 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124287 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124226 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124165 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124104 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCGAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //