Array 1 2968062-2969349 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP086010.1 Pseudomonas aeruginosa isolate KB-PA_F19 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2968062 28 100.0 32 ............................ AGTTCGTGGAGTCGTCGAATCACCCGGTAACG 2968122 28 100.0 32 ............................ AAGATGAACTTGATGCTGTGCATGAGGCGCGG 2968182 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 2968242 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 2968302 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 2968362 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 2968422 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 2968482 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 2968542 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 2968602 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 2968662 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 2968722 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 2968782 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 2968842 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 2968902 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 2968962 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 2969022 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 2969082 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 2969142 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 2969202 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 2969262 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 2969322 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 22 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2978805-2977874 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP086010.1 Pseudomonas aeruginosa isolate KB-PA_F19 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2978804 28 96.4 32 ..C......................... GCATAAAAGTGCCAACGTCGACTTTGTAGCGT ATT [2978795] 2978741 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 2978681 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 2978621 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 2978561 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 2978501 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 2978441 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 2978381 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 2978321 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 2978261 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 2978201 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 2978141 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 2978081 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 2978021 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 2977961 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 2977901 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.6 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GAGGTGTTCAACAGCGACCAGGGATCGCAGTTTACCAGCGCGGCCTTCACGGGCGTGCTCAAACGCGAGGGCGTGGCTATCAGCATGGACGGGCGCGGACGGGCGCTGGACAACATCTTCGTCGAGCGCTTGTGGCGCAACGTGAAGCATGAGGACGTGTACCTGAAGGGCTACGCCAACATGGCCGAGCTGACGGTGGGCCTGGCGCAGTACTTCGCGTTCTACAACGCCGAGCGGCCGCACCAGTCCCTTGGCTACAAGACACCTGCCAGCGTCTATCGCAGTGGTATCGGCGGCGGCGCGCTGATCGCGGACAAGTACGGCGGCGCACAGCGGGAACTGGAAGCGGCGTGAACGCCGTCTGGCCTGCCGGCGGCGGCGGCCACCGGAGGGTAAGCTCTCCAGCGGCACGGCAGGAGAATCACGGGGCAGCGCCGACCAGCTGCAGTGGCAGTAAGCGACGCAGCTTAAACTCGCTGAAAAACTGTCTTGACCGATGG # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2981670-2980262 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP086010.1 Pseudomonas aeruginosa isolate KB-PA_F19 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2981669 28 100.0 32 ............................ ATGACTAGCATGAATGAAGCGCGTAACATGAC 2981609 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 2981549 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 2981489 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 2981429 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 2981369 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 2981309 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 2981249 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 2981189 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 2981129 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 2981069 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 2981009 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 2980949 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 2980889 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 2980829 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 2980769 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 2980709 28 100.0 31 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCC 2980650 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG G [2980649] 2980589 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 2980529 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 2980469 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 2980409 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 2980349 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 2980289 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 24 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : AGACCATCACACCGGTGACGCTGCACATCGTCGTTCACTGCCTATAGTGGATCCACCTTTTGAGACAGTGACTACGGGGTAGTTTAAGCTGTCGTCCTCGAAAGGATGACAGCAAATGGGTGAAGCAAAGAAACGCAAGGTGCACACGGCCGAATTCAAGGCCAAGGTAGGTCTGGAGGCGGTGCGCGGAGTGAAGACGATTACGGAGATTGCGCAGGCGTACGGCGTGCATCCGCAACTGGTCGGGCAATGGAAGAAGGAGATCCTGGAATCGGCGGGCGCCCTGTTCGAGACGAAGCGCGGCCCGAAGCCAGCCGAGGACAAGAGCGGCGAAGAGCGGCTGTACGGAGAAATCGGGCGGCTGAAGATGGAGAATGACTGGCTTAAAAAAAAGTTGGGAGTGTGAGCCTGGATGCGCGGGTCGGCTGGGTCGACGGCGCCGACAAGCTGTCCTTGAGCCGTCAGTGCGAGCTGGCCGAGGTGCCGCGCGCGACGGTCTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //