Array 1 258463-256147 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNMD010000003.1 Clostridium sp. 1001283B150225_161107_B6 NODE_3_length_619574_cov_31.5827, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 258462 33 100.0 33 ................................. CATCCATTTAATCTCTTCCTCTTGCTCTCTTAT 258396 33 100.0 33 ................................. GCCTCCACCTTGAAATCGTAACTAGAATAAGTT 258330 33 100.0 33 ................................. GCTCACAGTTCCAGGCCATGTTGTGGTTTTGAT 258264 33 100.0 33 ................................. CCTCTTAATGTTGATAATATCAAGATTAAACGC 258198 33 100.0 35 ................................. GATACGCTGTTATCAGCAAATGGGGTAGATACATC 258130 33 100.0 35 ................................. CAGGTTTATATGATATTAAACCTGGCACTGAAATT 258062 33 100.0 33 ................................. TCCAATCAACCTTGCGTCAGCTTCATTGTCTGC 257996 33 100.0 34 ................................. AAATGGACACCAGTCCGTTGCACAAAGGACTGGG 257929 33 100.0 34 ................................. GTTGGTCCGTGTGATATCGCACGGAGCTGGGAAC 257862 33 100.0 34 ................................. CGTAAAAGAACGAATCCTGTCCTGTCTGGCCGTG 257795 33 100.0 32 ................................. AAGATGGGAAGATGAAATGGCATGTTTATATC 257730 33 100.0 35 ................................. GTCACCCTCCATCCCGCATTGAGCCGTTTTCCATC 257662 33 100.0 36 ................................. TTGACCCACCTGTCAAACGTCACGGATGCCTTATTG 257593 33 100.0 33 ................................. TGGTGTTTGCATTAGTTTGCATTTCAGTGCAAT 257527 33 100.0 35 ................................. ATAAATTGCACTGTTTACCACGCTACACCTGCTTT 257459 33 100.0 34 ................................. AAAGCATCTGCACTAGATGTTAGTATGCAAATAC 257392 33 100.0 34 ................................. AGCGATAAGAAGGGGAGAAAATCCCAGGTCAATG 257325 33 100.0 36 ................................. TCCATGGCAGCCTTTAAGGCGGCGCCTTCCGTGCTA 257256 33 100.0 33 ................................. TCCGTCAAATTTGTGTCTTAGTGACCACGCTCT 257190 33 100.0 35 ................................. GCAGCATTTATCTGACGTCTCAAATGGCGCGTTTA 257122 33 100.0 33 ................................. ATATTTACCAGAAGGAGGGAGAGCCCCCTTATT 257056 33 100.0 34 ................................. AAAGCACTGGCTGTCCGGCCTTCTCAAATGCTCC 256989 33 100.0 33 ................................. GTTGGTAAATTATCTAGTGCGGTTGCACGAATA 256923 33 100.0 33 ................................. CAATAAGGGATGATGCACTGTTTCCCTACGAAC 256857 33 100.0 37 ................................. TACCTCCGGCAGACCGGCCACTGATGTTCCCAATGAC 256787 33 100.0 35 ................................. CCGTAACCTTAATTACAGGCAAGTACAGGATAGTC 256719 33 97.0 34 .............T................... TAACGAGTATAATTTCTCAGATGGTTCTGCAATT 256652 33 100.0 34 ................................. CTCCATCCGATTCCAGGCGGCGGCAGGTTCATGG 256585 33 100.0 35 ................................. TCTCCTTCCCTCTTACAGCCTTTGCCGCTCCTGCC 256517 33 100.0 33 ................................. CTCCGTTTGATTTTAAAATGGGCGGGGTTTCCG 256451 33 100.0 35 ................................. TGGTTCATGTAATCATCATAGGCAGGACCATTGGC 256383 33 100.0 35 ................................. TTCGGTTGCGCTTCCTGCACCATAGCTTTTGCATC 256315 33 100.0 36 ................................. CTGCTTGGTTGTCTCCCCATGCTAGCTGGTTTAGGC 256246 33 100.0 34 ................................. GTCCATACGCAGATAGGACTGGATGTAGCCACAT 256179 33 87.9 0 .........C...........A..T....C... | ========== ====== ====== ====== ================================= ===================================== ================== 35 33 99.6 34 GTCTCCGCCTTCGCGGGTGGAGTGGATTGAAAT # Left flank : GCTGGTATTAATTACATATGATGTGAACACGGAAACCGCTGCAGGCAAGGCCAGACTGAGAAAGGTTGCAAAGCAGTGCGTCAATTATGGTACCCGCGTTCAGAATTCCGTATTTGAATGTATTCTGGATAATGCCCAGCTGATAAAGCTAAAGGCAATTCTGACAGATATCATTGATGAACAGACGGACAGCCTTAGATTTTATAACTTAGGGAATAAACATAATACAAAGGTGGACCATGTTGGTGTTAGTAAGGGAATTAATGTGGAGGAACCATTGATTTTCTGATATGATGTGCAGGAGTTGAAACGGTAATAGGTGTTCCGGTGCGAACCTGAAGCAAACATGGATTTCCAGGGGGATTCGCACCAGAAAAATTGTATAATGAGGATGGCATTGTGAGGATTTAGGCATGTTTTCCGGGATTTGGAGGGGGTGTTGTATGACCTGTTTGTTGGAATTTAATAAGAAATGATAGGAGTTGTTGTGTATTATTGCT # Right flank : AGAACAGTACATAGCTGACCTTGCAGCATAGCGGAATAGAATTAATATATAAAAGAATAGTTATTTTAACTGTATTTTGTATACAGTGCACAGCGGATACTTCCGACTATAAATGCATAACAATAAGGTGGGGCAAGCCCCACCTCTGTTAATCTATAAAATGCTGCAAAAGAGTGCTGACAAAAACCCATATTTCAGCTGCCCCCCATTAGCCCTTCCACGCCCGAATTTCCCTAAGTCCAGGTACCAGCACTTTGGCGCTGGTTTCCAATATAATCCGTCCCTTTTCCGCAGTGGCGCCGGACGGATCTCCGCCGATTCCAATGGGTTTGCCGTCCGCTGTCTTCCAGTCCTCGGATACCCATCCAATGGATACATTCCCGTAAGGCTTCAGCGCTTGATTATCCTTAAATGCATGCGGGATGCCTGCTTCTGAAGTCTCCAGTTTTACCAGAGACGGGTCCACGGCCATGACCATGGAGGTTTCCATTTCGCCGCCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCGCCTTCGCGGGTGGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 1 39680-39244 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNMD010000005.1 Clostridium sp. 1001283B150225_161107_B6 NODE_5_length_339979_cov_27.0513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 39679 33 100.0 36 ................................. TATTGGGTCCATGACCGAAAATAAATCCCCGCACAC 39610 33 100.0 34 ................................. CCCTGGCGGACAACGTAAGAAGTACAACCGGTAC 39543 33 100.0 34 ................................. AAAAGCGCTTTGGGATAACACGGACCAGCTGGCA 39476 33 100.0 34 ................................. AGACGAGGACAAGACCACGCTGGCGGCCTGGATT 39409 33 100.0 34 ................................. GTAAGAATCCGTCCTACGGCTACGGCAGTCCAAT 39342 33 93.9 34 ........................A.C...... GGTTGTTGCCATAGGTTTCCACAATCTGGTGCAT 39275 32 75.8 0 ..........T....A....A.CAA...-...C | ========== ====== ====== ====== ================================= ==================================== ================== 7 33 95.7 34 GTCAGCTTCTGCGAAGAAGCTGTGGATTGAAAT # Left flank : GGCAGGTTATTTTGAGGAGGAGGCGTGTAAGTATTACGAAATACTTCAAGAATTTTTGAGAGTATATGAAAATAAAGATTAAAATTGTTATCCCTTACTTGACTCACTCGTGAGCGGTAGTCCAATTATACAAGATGGGAAGCTGGCCGGGGTGGTGACACATGTGTTTGTACAGGATGCAAGCCGGGGGGATGGGATTTTGATTGAGAATATGTTGGAGTATTGAGGGTGAAGGAATAAGCACAAAATGGCTGTGATTCAACCAAAATCAAAACTAGAGTAGATGAGGAAAGGCTTTCGGAAGATTACGAATTATCCTTCATCATATAAGTGCGAATGCCAAGTGAACAGGAAAACTTGGGGGGATTCGTACCCCTTTTAAGGGACTTTGAGTAAAAAAAATCAAAGGAGATGCAAGCAAATGTAGAATTATGAGATAAAATTGTACAATATGTATACAATGTGACTGATGTGAAATGGAAAGATTGGATATGTTTGCT # Right flank : ACCAGAACCGCAACCATGACACGCCCATGCATGCCACCTCCTTCAAAGAATCCATAGAACAAAGCAATCATTTCCCATATCATCCGATAATGATTGGCTCGTACGAGGCATCTGCTGATGCCTCCCATACCAATCAAATGACCATGAGCATGTCGTCATACATCGCTCCGCACTCTTTCCCATGTCATTCTTCCGCCCTCAATCACTCCCCCTCGTCAAAATTCGACAAATCCCGTCGCTCCCCCTCCCGAAAATCTGCCAAAGTTTTAAATATCAGGAGGAAAAACAGTGATGTTTGCGTTCTATAATCGTGCCTGTGAGAATATAATGAAATGAAACATCAACGTGCTGAAATTACAAAAATGGTGTCGAATTAAAGTAAAATAAAGTAAAAAAACCAATTATTTGTTACAGAAATGTTAATCGTCACAATTAATAATTGCAAAATGACACCAAAAATGATACAATTTAATCTCGACGCGTGTCTAAAATTGCGACCA # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:0, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGCTTCTGCGAAGAAGCTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 2 282651-282415 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNMD010000005.1 Clostridium sp. 1001283B150225_161107_B6 NODE_5_length_339979_cov_27.0513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 282650 33 97.0 34 ...............G................. TTCGCGTATGATGGAAAAGCGATGACTGAGTTGG 282583 33 100.0 36 ................................. CGCATCGCTATTACAGAGTGTGGCCGGGGACACGGC 282514 33 100.0 34 ................................. TTCTTCGGTCTGTACCTCCTCCAGCCGTTGGAGC 282447 33 75.8 0 ............A..G....C.CAAA.C..... | ========== ====== ====== ====== ================================= ==================================== ================== 4 33 93.2 35 GTCGAGGCCCGCGAGAGCCTTGTGGGTTGAAAT # Left flank : GTCCTGGAGTTTCCGGATGAATGTGGATTTCTGGCAGTGGCCGGAACCGCAGTGGCCCTGAAGGCAGGAAAGCCGGCAGCCGTAATGGAACGCCAGGGCAGGGTGCTCCGCGTTTATAATACTAATGATATGGAGGAAGTGATAACAGAATTTGTCCGCGCATTTAAGCAGGGAGCCATATATCCGGAGCAAAAGAGGATTGTTTTGAAAGAGTATCCGGATGAGGCAGCTGATGTATTGCAGACTGCAGGATATATGCGTGAAATGAAGGATTATGTGCTGTATAAATAGTGTATAGCTTTACGGGATTAAAGTCCTTTTAGGCAGGTGCGAATGCCAGGCGGACATGAAATGTCCGGGAGATTCGCACCGGAAAGTCCGGGGAGATGGATGGATGTGTGGGCTGTGGCAGAAGGAGCGAAGGGCGGAATTAAGGAGGAAAAGTGAAAAATACACAAAATGATGGGGGGAATGCGGAGGGAATGTTAGGCAGATTTGCT # Right flank : AAGAAGGGCAGTAGATTTATGATTTTTTGTAATAAGCCAATTCCCATCAGAACCTTACCACCACGCAAAGGAATACAGCTTCCCCAACATTACCCCCATCCCTGCCTGACGCCATCCTCCGCGGTTATTCCTCTGTCATTTATTTAGCCATAGCAGCTTTATCCGCACGCCCCATCCATTCATAATACTTACACCATTCATCTAATGAATGCAGGGGAATTGAGACATTATTTACCATGGCCGACGATGTAATTGTATCAGGGTCCAGAGAACAGTCGTGGTCAATTCCGTCATGAACGATAACAAATCCAGCCATTATGTCAATATCCACGCCATCTATCGTATATTCAAGGAAGTGCCTTGTTTTATACCGCGCATTTGGATTTTTTGGAGACAGGGCGCCGAATTGCTGCATAAGTTCTTTTACACGGGGGACGTCTTTTTCTGATATCAGAAGGTCGATATCATGAAAATCATCTGTTTTTCCATTGAGATACAGC # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCCCGCGAGAGCCTTGTGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //