Array 1 11918-11521 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQR01000105.1 Actinomadura kijaniata NBRC 14229, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 11917 30 100.0 31 .............................. GCAGGCCGACTCGTGCGAGGGACAGCGGTGA 11856 30 100.0 31 .............................. TCGCCGTTGCGGAGTCCGTGTGGACGTTCAT 11795 30 100.0 31 .............................. GCCAGCGCCGCCGCGCGTTCGGCCGACCGCT 11734 30 100.0 31 .............................. GCTTCCACGACTACAGCGACAAGTTCCATCG 11673 30 96.7 31 .............................C AGTGGTGGAACCAACAAACGAACCAGGAGAT 11612 30 96.7 32 .............................C GGAACCGAGACGCCCATCTTCGCCAGGCCATC 11550 30 90.0 0 .........................G..GC | ========== ====== ====== ====== ============================== ================================ ================== 7 30 97.6 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : TGGGCGTGGCGGTGTTCGCCAACGACCTGATCCGCCCCATCCGCGAGGTGGCGGAACGCGCCTACGACATCGTCCACTGGAGCGAGTTCGAAAGAGGAGGCCACTTCCCGTCCCTGGAGACCCCCGACCTGCTGGTGAAGGACATCAAGACGTTCTTCAACTCCCTGCCCTAACGGACCCCACTCGGGAAAGCGGCGACCAGAAGCAAGCTGCAACGCCTCATAAGCAACCGGCCAAAGAATCACCGACAACCACTGCCACGCTTCTCGTCCCGATCGGATAAGGGACTCTCGCCGCGCCACTGTGACCACCGAAGCAACCACATCCGTCACGACCTCTGATGGACGGCTGTTTTCGCAGCTAAACTGTGGCTGGACTCGCTGCGTGACTGCCGCGCTCCCACAAGGACCGCACAACCTGGCGCCACGTCCGATATGACCGAATCCAATAAAGTGCTCGAAAACCACCGCTCGCCCGCACAAACCCGCAGGTCATTCAGC # Right flank : CGTTGGGGGCGTCAGGGGTTGGTGGTGGCCACTCGTTGGGCGAGGGCGCGGTTCATCGCGTGGAACTGCGGGAGGGTCTTGTCGTTCAGCTTGTCCGCGAAGAACGGCACCAGGACGCCGGTGAACTTCTCGCTCTGGGTGAGCCGGACGCGACCGGAGCCGATCGGTTCGATGACGAAGCGGTGCTCACCGGTGAAGACTCCGCCGGGGGCGACCTTGCCGACCCAGCGGAACTCGCGGCCGGGGGTGGCCTCCAGCACGGTGGGCGTGAAGGTGGTCTCCCCGTCGGCGTCGCGCATGACGTTGCGGAGGGTGGCCCCCTCCTGGACCCGGCCGCTGGAGGAGATGATGAACGGATTCCACTGCGCGTAGGCGGGCAGGTCGGTCAGGACCTTCCATACCTGGTCGGGGGTGGCCTCCATCTCGATCGAGGCGCTCAGGTTCAGGGGGCGTAGGTTGGTCCAGGTCGCATAGCCCGCCAGCAGCGCGGCGACGGTGCC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 41565-41048 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQR01000009.1 Actinomadura kijaniata NBRC 14229, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 41564 29 100.0 32 ............................. TTCTTCAGCATGTACTGCATGGACGCGGCCCC 41503 29 100.0 32 ............................. TACGACGCGCTGCCCGACGGCGGCGGCGCCCT 41442 29 96.6 32 .................A........... CGCCTGCACGGACTCGACGTGCTCGCCCTTGG 41381 29 100.0 32 ............................. ATCACAGACGGGATCCGGATCACAATGGTCCG 41320 29 100.0 32 ............................. GCCACGCTGACCGGCATCACGCCGAACGGCAC 41259 29 100.0 32 ............................. GGCTACCTTCTGAGCTGGTGACCTGTTGGGGC 41198 29 100.0 32 ............................. TCGGCCCCCGAGATGTCGGCCACGTCCACGGG 41137 29 96.6 32 ........................A.... CAGGAAGACCTCGTCCGAAAGGTCGTCGACCT 41076 29 93.1 0 ................T.........T.. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.5 32 GTTCTCTCCGCGCGAGCGGAGGTGGTCCG # Left flank : CGCGGAGAGAACTCGGGGGCGCTCGCGGCGCACTGCTCGGCGGCCGGACCACCTCCGCCTGCGCGGAGAGAACCCTGAAACGACGGAGAGACCTTGCCCAGGTCGTGCAGGCCAGCCCAGAAACAGATAAGAGAGCGCGCCTCTTCTCTGGAGATCTTGCTGAAGGGGCCAGACTGAAGTGTGGGAAGGCCATCGACCCACGCATCCCAGAGGGCTCCGGCCACTGCAGCGGTGTCGACGAGGTGACAGACCGCAGGGTAAGGGGCTGGGAGCCCAGCGTGCTTGCCCCACAGGCGCGCATCAACACTCAACATCTGTGGAGGGCCTTGAGGCGGCATGGGCAGCTCCAAAACGGCAGCACTGTCATCGCCCACCGCATCACATGCCACCGACAGAATGTGAGGAGCCCCTCTAAGCTGCTTCCATGACCGCTGTTCACCCGCACCGCAGCGTGAGGTTGCAGAATGGTAACGGTGGTCTTTAAGCGCAGGTCACTAAGT # Right flank : GCGTGGACGACCATGTGGATGTGCGGTTGAAGCGCTCCCCGCGCGGGCGAGGACGGGCTGGCTTCAGGGGCGCTTTCGTTGCTGTGGTGACCTATTTGGGCCCCAAGGGCATTTGCGTTCGCCGCAACTTTGGAGGTCGCCCAGGCCACGCTAGGTGCGCGAGTAGGCGGGCAAGCGGACTGTAAATCCGTCGGCTTAGCCTACGCAGGTTCGAACCCTGCACCCGCCACCTCAGTGGGAACGGCCCCTGACCAGCACGTATGGTCCGGGGCCGTTGGCCTTTCCGGAACCCGCCAGTGCAGCCGGATGCCACGATGTGCCGCCGTCTGTCGCTGGTCGCGGGATATGCGCGGGATGGGCCAAGGGAGCTTTCCCAGGTGGCATCAGGAATAGCGAAGGGCTTCGGGATGATCCGGAGCCCTTCCGTCTGTCGGCGCGTATTCGGCACGATCACTCGCCCAACGCGCCGTCGATCCGCTTGTTCGCCTGCTCCTGCTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTCCGCGCGAGCGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCTCCGCGCGAGCGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 41992-42568 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQR01000009.1 Actinomadura kijaniata NBRC 14229, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 41992 29 100.0 32 ............................. GCCGCCGAGCAGTGCGCCGCGAGCGCCCCCGA 42053 29 100.0 32 ............................. TAGCCGCTCGTTGCCCAACTCTCGGTATCGAG 42114 29 100.0 32 ............................. CCGATCCGCAGCCAGCGCGGCAGCGTCTTCGT 42175 29 96.6 32 ..................A.......... GTCGTTGAGGAACTCATCCCGCGTTGCGCTGG 42236 29 100.0 32 ............................. TCCGCTCCGAGATCGAAAGCGAACTGGGCCGC 42297 29 100.0 32 ............................. GCGCTGGGCAGCCTGCAGGCGATCCACAAACT 42358 29 100.0 32 ............................. GTCGGGGTGATCAGGCCGGTACCGGAGACCAC 42419 29 96.6 32 .......................A..... CCCGAGACCAGGCTCCATGTCCCGCTGGCGGG 42480 29 93.1 32 A........................C... CTCGATGCCGCCCTCGTCGCCGGTCCGCTCCT 42541 28 72.4 0 .....A........C.-..TT.ACT.... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 95.9 32 GTTCTCTCCGCGCAGGCGGAGGTGGTCCG # Left flank : CGCGGAGAGAACGGGGCCGCGTCCATGCAGTACATGCTGAAGAACGGACCACCTCCGCTCGCGCGGAGAGAACACTTAGTGACCTGCGCTTAAAGACCACCGTTACCATTCTGCAACCTCACGCTGCGGTGCGGGTGAACAGCGGTCATGGAAGCAGCTTAGAGGGGCTCCTCACATTCTGTCGGTGGCATGTGATGCGGTGGGCGATGACAGTGCTGCCGTTTTGGAGCTGCCCATGCCGCCTCAAGGCCCTCCACAGATGTTGAGTGTTGATGCGCGCCTGTGGGGCAAGCACGCTGGGCTCCCAGCCCCTTACCCTGCGGTCTGTCACCTCGTCGACACCGCTGCAGTGGCCGGAGCCCTCTGGGATGCGTGGGTCGATGGCCTTCCCACACTTCAGTCTGGCCCCTTCAGCAAGATCTCCAGAGAAGAGGCGCGCTCTCTTATCTGTTTCTGGGCTGGCCTGCACGACCTGGGCAAGGTCTCTCCGTCGTTTCAGG # Right flank : GTAGGTGGGCAGTGCGGTCGGCCAGTCCGCATGCCCACCTACTCGCACACCTAGCGTGACCTGGACAATCGCCAAAGTTGCGGCGAACGCAAATGCTCTTGGGGCCCAAATAGGTCACCGCAGCGATGAAATCGCCCTTGAAGCCACCGCCCTTGCACGCACGGGGAACGCTTCAGCCACACATTCACATGGTCATCATCACCTAGATCACCTCCGCACGAGCGGGGAGCATCTGAGGGCGTCCAGTCCTCCGGGAGCGTATCTAGGGGCCGTCCCCACGCGGGAAGTACATCCGCCAGAACCTGCGTGATTGGGTCGCCTCCGCTCGCGCGGAGAGAACGCGGTGCCGTTGCCGTGGCGTTCCTCGCGGAGCGGACCACCTCCGCTCGCGCGGAGAGAACCGAACCCATTCGCCGCGCTCCATCTTGGCCAGCGGACCACCTCCGCTCGCGCGGAGAATTATGACTGTGATGCCCTCGATAGCCATCATCCACAATTAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTCCGCGCAGGCGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCTCCGCGCAGGCGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.80,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 50719-53615 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQR01000009.1 Actinomadura kijaniata NBRC 14229, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 50719 29 86.2 32 A.A.......T...A.............. CACCGACCCACCGACAAGGCCACCCTTACTTC T [50722] 50781 29 96.6 32 .C........................... CGCCGCCGAAGCCCGCCTGAGCCTGCTCACCC 50842 29 100.0 32 ............................. CAGGCGCGGTAGCGGATGGTGTGCCCGGCCGA 50903 29 100.0 32 ............................. CTGCTGGCCGAACACCACGGGCACGAAAGGAT 50964 29 100.0 32 ............................. TCGGCCGAGACCGGAGGGGTCCCGCCGTAGCG 51025 29 100.0 32 ............................. TGGACCAGATGCTCGATGCGATGCTGGGAGCC 51086 29 100.0 32 ............................. ACGCCGTCGACGACGTCGTTGTAAGCGGTCCA 51147 29 100.0 32 ............................. CTCGACGTGTTCGTGCTGAACAACAACGCGGC 51208 29 100.0 32 ............................. CCGAGGACGGGATCTATCATCGCGTCATGGAC 51269 29 100.0 32 ............................. CAGGAGTGACCCGCTACTGCCATCCGGTCTCA 51330 29 100.0 32 ............................. GTCGCGGGCCTGGCCATGATGGTGGTATCCGT 51391 29 100.0 32 ............................. TCGCCGTCCATCTCGACCTCGCCATGGCTACG 51452 29 100.0 32 ............................. GCGGCGGCCTGGCGGGCGTACTTTGCGGCGTC 51513 29 100.0 32 ............................. TACAGCGTCACCAGCCAGCAGGCGCGTGCGCT 51574 29 100.0 32 ............................. TGGACCCACTTGGCCGCCGAGAACCGGGCGGC 51635 29 96.6 32 .........A................... GACGAGCGGTCCGACGTCGGCACCGCGGTGCA 51696 29 100.0 32 ............................. AGCGCCTGATCGGAGGGGTGAGCATGGCACGG 51757 29 100.0 32 ............................. CGCGTGATCGAGCTGCGGACCCCGTTCACCCC 51818 29 100.0 32 ............................. CGGCATGGGAGTTGGGGGTCTAGGTGGCTGAC 51879 29 100.0 32 ............................. CCGCTCACGGCGCCGTCCCGCTCGGCGTCGGT 51940 29 100.0 32 ............................. CCGATGCCGGTCTTCTTGGTGCCGGCGCCGGT 52001 29 100.0 32 ............................. GCATCGCGCAGGCGGGTTACGTTCTCAGGTAG 52062 29 100.0 32 ............................. GCTGTGCGCGACGCAGAAGCATCCGCCGCCTG 52123 29 96.6 32 ............T................ CGGGTCAGGATCTCGTGGCCCAGGTGCCCGAA 52184 29 96.6 32 ....C........................ CACAGGGCTGAGGACCCGGCCGGATTCCCGGC 52245 29 100.0 32 ............................. AACTACATCCGCACGGCTCTATATATGGCGGT 52306 29 96.6 32 ............................C GGGCCCACGCCGCGCAGGTCGGCCAAGATCCC 52367 29 100.0 32 ............................. GTGCTGGTCGCGCTGTCGCCGGTGCTCGTGGT 52428 29 100.0 32 ............................. TCGCCCAGGTCCTCGCGGACGTTGGCGGGGTG 52489 29 96.6 32 ..........T.................. GGCGTGTTCGTCGCCGACCGCCCCAACCTCGT 52550 29 100.0 32 ............................. CTCGAATCGGTGCTGCGGCTGTACGGCCAGCG 52611 29 100.0 32 ............................. AGCAAGGGCTCAGCCCCGGCTACATCCACCAG 52672 29 100.0 32 ............................. TCCTCGCCGTCGTGGCTTCTGGCCATTACTTG 52733 29 100.0 32 ............................. ACCCGCACCCGCACCACCCTGCCCCTGGCCGT 52794 29 96.6 32 .....................A....... CGACCGGGCTGCCGAGCGGAACGGTATATCCG 52855 29 100.0 32 ............................. CTCGGCCTGCCGGTGTTCATCGGGACGCTGGA 52916 29 96.6 32 ............................T CAAGGATCTCGCACGCGAGCTGCCGCAGCCGC 52977 29 100.0 32 ............................. ACCCTCAGCACCGTGGTTGACCTGCTCACCGA 53038 29 96.6 32 ..........................T.. ACCCAATCCCACGACTCACCAAACGAGTTCTT 53099 29 93.1 32 ................T...........T GCAGCACAAGGGGTGTCGGGGGCCCTGACCTG 53160 29 100.0 32 ............................. CACGCCGCCCCGGAGGTAGCACCATGATCCAG 53221 29 96.6 32 .C........................... TGGACGCCGGTCACGATGCCCATCAGGTAGGT 53282 29 100.0 31 ............................. CTGGAAGGTCCCGTAGGAGTTCGCCGCTCCG 53342 29 100.0 32 ............................. ATCCGGTCCAAGAACGTGCAGGTCACCGTCAC 53403 29 96.6 32 ......................C...... TCACTGGCCGGGACGGCCGTCGTGAAGCTCCC 53464 29 100.0 32 ............................. TTCAGCGACGAGGACCTGCGCGAGATCATCGC 53525 29 100.0 32 ............................. TCGGTGGCGAGGTCGGGCGTCTCGATGTCCTC 53586 29 89.7 0 ........................C..GT | A [53610] ========== ====== ====== ====== ============================= ================================ ================== 48 29 98.6 32 GTTCTCTCCGCGCAGGCGGAGGTGGTCCG # Left flank : ACCTGACCGAGCCTCCCCGCCTCAGAACCCTGGCTCCCCTCCGGGAACTGCTCACCCCTGGGCGGCGCTTCGCGTTCCGGCTCACAGGCAACCCCACCCGCAACGTCGACACCAAAACCCGCGCCGACGGCAAACGCCGCTCCGGCCGCCACCTCCCCCTCCGCGACGAAACCGCACGCCTGGGATGGCTGGCCCGCAAAGGCGCCCAGTACGGCTTCGAGGTACCGATCGGCCAGCTCGGCACTCCCGACGTACAGATCAGCAGCCTGCCGAGAGGACGCGGTGACAAACAAGCCGGAACCGTTGTAACCATCGAACCCGTCCGTTTCGAAGGTCACCTGACCATCACGGAGCCGGACCTCTTTTGGGACGGCCTACAACACGGCATCGGCCGAGCACGTCCATACGGGTGCGGCCTACTGACGCTCATACGAAGTAGGCAATGATGATCTTTGCCTGGAAGGACCCCCGCTCAAAGCTTCGAATGATTCACCTACCCC # Right flank : TACAAGGGCTGTTTTGTCAGTGGGGCCCGATAGGCATTAGGGGTCCGTCCGTTGACCGTGCCCTCGCAGCTGCGGCTTCACGGCTCAGCGACACCACCAGAACTCCTTATTCGCGGTCGGCGGCCTCATGGCAACCCACTGCCCCCCAACTCCGAAAGCTATGAGCCGGTCCCTGACACCTACCGCCTGACGACGGCCTACGTCACAATCTTCTACCGCCTGGCGGGCGAAGAGATCGACAGCTTGTACGTCCGCCCGAACACGTGATCGTGCTGGCGCTCCGTGCCAAAGGCAGCCCTCCGTTCGAGGGCTGCCTTTTTGTTTCCGGGACGACCACTGACGCCAATCGGTGCCTACTGCCAGGGCATACGGCGGCGATTCAACGTCGCCAGCTCGACGTAGGAGGCCGACGTGGAGAACGGCACTATCTCTTCTTACCAAGCCCTGGAAGTCCTCCACTCACAGCCCGAATACTTTTCGGCCCTTCCTTGTTGACGCCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTCCGCGCAGGCGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCTCCGCGCAGGCGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.80,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 26932-26536 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQR01000086.1 Actinomadura kijaniata NBRC 14229, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26931 29 100.0 32 ............................. TTGGGCGGCGACGCCCGCCCACGCCAGCGCTC 26870 29 100.0 32 ............................. GGCCAGACGGGGCAGCCGCTCCACCAGGTCCC 26809 29 96.6 32 ............................T GTACCGGGGCAGTTTTCACCGGCTGTGCCGGG 26748 29 93.1 32 ..............G.............G TACGGCCCGCCCGTCACGGTGCGGTGCCTGCT 26687 29 89.7 32 .....T..................C...G TACGACACGGTATTGATCGCCATCGTGGACGT 26626 29 96.6 32 ........................C.... TGCTTTTCAGTCGGTTCGTTCGGTGCGGCGTA 26565 29 89.7 0 ................T.......C...G | T [26548] ========== ====== ====== ====== ============================= ================================ ================== 7 29 95.1 32 GTCGGCCCCGCGCACGCGGGGATGGTCCC # Left flank : CCTCTCCCTGGCACCTGCGGACATGGTCAAGGCGGAACGCTTCGACGAAGCACGCCGCCTCGCCCGCCTGGAGGAGGCTGTGACCCATGACCGGCTCGGATTCCTCCGCGACGTCACCCTTGCCGATCCCCGGTCGGCTCAGCTGTGGTGGCTGCAGCGCAATCTGGAGGGGGAGCAGCCAGAGACGTCGTGGCAAGTGTTCGACGAGATGGTTCGTCCTTTGATTGTGAACGCCGCTTCTCAGGACGATGCCGTGACCAGATTCGCCAACCTTGTTGTCTCCCTCGTGGATCGTGTCCACGAGGACTCCGACCGGTTGGAGATCCTGGCGGGCCTCTCCAAGGCGCTTCTCGAAACCATGGGGTGGCAGGACCTGGCTGATGAGGCGGCGGCGCTGTTCGCAGTCCCTCCGCCCGTCCCCGAATGACTCGACACTGAGTCTCGTGAAACAACTGAATGAAAACGTAGACCCACGTCGGCGTCACTACAGGTCAACAAGC # Right flank : AACGCCCCCAGCATCCCGCCGTCCTTCAGCCAGTGCCAAAAGCACATGTAATCGCTATCACCTGCCAGCCGCCCGACCGTCCCCGGTCGGGCGGCTGGCCCATACCCCGACCGATACGGAGTCACCATGACCCCTCAACTCCTGGACAGTCACACCGAAATCGCCACCACCGGCCACGGCATGTTCGGCTTCTACGACGAAGAAGGGACCCACCCCGAACCCTCGCCCCGGCACGACGACCAGTGGCACACCGCCTCTAGATCGGTGCTGCGGTTCGGGCCGGGCGGGCAACTCGGGCTTGCGGCCTGCGTCCAGCAGCAACCGCACGGCGCGGTATCGCAGCTCGGGCAGCGGTATCCGCCCGTCCCTGACGAGCTGCGCAAGGACGCCCAGGGCGTCTCGCGTCTGGACGCCGGACCGAAGACGGACCCCTGACAGCAGACCCCAGACGTCAAGCTCCCCCAGAAAGTCACCGGCGGCCCCTTCCGGGTCGGCCGACG # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 34104-33648 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQR01000086.1 Actinomadura kijaniata NBRC 14229, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 34103 29 93.1 32 ........................C...T TCGACACCCCACCCCCGGACCACCGATGACCG 34042 29 100.0 32 ............................. ATGTTCATCCACACCCAGCCCGACACCGAGGC 33981 29 96.6 32 ..............T.............. CCGCCGGTCCAACCAAGGCGGATCCTGCGTGG 33920 29 86.2 32 ..T.................A.....T.C CTGCGCACCGGCAACGGCTGGTTCGTCCTGGT 33859 29 100.0 32 ............................. CCGTATGGACGCGGAACTTTCACGTGTGCTCC 33798 29 86.2 32 ....A...............A...C.G.. AGGATGCTCAGGAAGTCCGTGACGCCGGAGAC 33737 29 96.6 32 ........................C.... TCCTTGCCCAGCTTGCGGGCCCTCTTGCCGGT 33676 29 89.7 0 ..............T....C....A.... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 93.6 32 GTCGGCCCCGCGCACGCGGGGATGGTCCG # Left flank : CGCTGCCACGTCGACCGGGACGAAAACGCCGTCGTCATCGTCAACAAACTCGAAACGGTCCGCGTCCCGGCCGCCATGGTCGCCACCATGCTCCTGGGACCCGGCACCAGAGCCACCCACGCAGCCATCGCCCTGCTGGCCGACTCCGGCACCACCGTCAGCTAGGTCGGCGAACAAGGCGTGCGCATGTACGCCTCCGGCCTGGGCCCCAGCCGCGGCGCCGGACTCCTGCACCGTCAGGCATGGCTGATCACCCGCCCCAAAGAACGCCTCAACGTGGCGCGCGCGATGTATAGCATGCGCTTCCCCGGCGAAGACGTCTCGGCCAAGAGCATGCAACAGCTACGCGGCCGTGAAGGATCACGCATCCGCAAGCTGTACCAGGCGCATGCCCAGCGCACCGGAGTCCCCCGGAACGGCCGCGAATACAAGCCTGGGGATACCTTCGCCGCAGGCGACGACCTCAACCGCATGCTGTCGGCGGCCAACGCCGCCCTGTA # Right flank : AACTCCCCCAGCACTCCGCCGTCCTTCAGCCAGTGCCAAAAGCACATGTAATCGCCGTAACCTGCCAGCCGCCCCACCGTCCCCGGTCGGGCGGCTGGCCCATACCCCGACCGATACGGAGTCACCATGACCCCCCAACTCCTCGGCAGCCACACCGCAATCGCCACCACCGGCCACGGCATGTTCGGCTTCTATGACGAAGAAGGCGCCTACCCCGAACCTCCACCCCGGCACGGTGACCAGTGGTACACCGCCTCTAGCGGCGCGGTCCGCATCTACCCGGTCTGTCAGCACCCTGCCCCTGCCATCCGTTTCGAACGCTGGGACCGGCTGCCGTCGCACGACGTCTATGACGAACTCGACCTGCCCGAAGTCGCGGCCACGCCCACATTCGAAATCAACGGAGAGGGATCCCTGGGCCTGATGGCGGTGGCCGCCGGTGCCGAACCCGGCGTGTTCAAAATTCCTCCGGGCCGCTACCACCTCCAGTTGCTCGGGTA # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 42930-47051 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQR01000086.1 Actinomadura kijaniata NBRC 14229, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================ ================== 42930 28 71.4 124 .A.......T.C..G.G.....G..G.A CCTCATCCGCCCTCCGCCATCACCTCAGCTACGCTGGATCAAGCTGAGCAAATCGAGAACGAGTCGCGTGATGCAACTAAATGAAACCTGGGGACCTGCATCACAAACTCGCAGTTCAGGAAGC A [42948] 43083 28 100.0 33 ............................ CGCAGCGCACGGCGTGTGGTCCGAGGCCGCGGG 43144 28 100.0 33 ............................ GCGACAAGACGCGGCCGGTCCACACCGGCAACG 43205 28 100.0 33 ............................ CTCGTCGATGACCATCATGTCGATGTCGTCGGT 43266 28 100.0 33 ............................ CCCGATTCTCCCACCGACCGCGAGATACCTCCA 43327 28 100.0 33 ............................ GCGGGGATCCCGGCCCGGTCCTGCTCGGGGTGA 43388 28 100.0 33 ............................ CCTTTTTGGAACCTTCGGGGCTGACCTGGGCTT 43449 28 100.0 33 ............................ CCGCAAGACCCAGTCCGACCAGGTCGCCGCCGC 43510 28 100.0 33 ............................ CGCGATACGCAGTCCCACCACCACCAGCAGTCC 43571 28 100.0 33 ............................ GATCAGCTCGGGCGGGGCCTCATCGGTGCGGAC 43632 28 100.0 33 ............................ CTCACCCAGCGCGGCGGTCACGGCCGGGTGGAT 43693 28 100.0 33 ............................ GACACCCCCTGCTGGATCGCCCACCACGGGCAG 43754 28 100.0 33 ............................ GGGCCACGCGGGGACGCTCGTCGCTATCGCCCT 43815 28 100.0 33 ............................ CTCCAACAGCCTGGGGATCGAGGCCGAGAACGA 43876 28 100.0 33 ............................ GTCGTCCACCGGGTGTGGGCCGCGCCCGCCAGG 43937 28 100.0 33 ............................ CGAGTGGAAGATGCCCCGCGTCCCCCAGGTCAC 43998 28 96.4 33 ..............G............. CTGGGCCAGCGCGTCGGCAACCAGTTCGGGTGA 44059 28 100.0 33 ............................ GCCAGGCCCGCGAGGCAGGCCAGCTGCGCAGCG 44120 28 96.4 33 .....T...................... GTGCAGGGCCCGGCCGGCCAGCGCGCCGATGAG 44181 28 96.4 33 ..................A......... GGTGTCGATCCAGGCGCGCATGTGCACCTTGAA 44242 28 100.0 33 ............................ CATCCGCAGCGTGATCCGGATGATCGGCGACGG 44303 28 92.9 33 ..............G..........C.. CGGGCAGTGCTTGGGGTCCTGGCGCTTGAGCCT 44364 27 85.7 34 .....T......T.G..........-.. TCTTGGGCTTGGCCGCCATCTGCTGGTCGCTGTC 44425 27 92.9 33 .....-........G............. GACCGACATCGCCAGCTTCGACACGCTGTTCGG 44485 28 92.9 33 ...A..........C............. GCCCGCGACGGCCAGCTCGACCGGGCGCGTACC 44546 28 100.0 33 ............................ CACCCCGTCCTTGATCTTGCCGTCCGGTTCGTG 44607 28 96.4 33 ..............C............. GACCCGCGATGCCGCCGTGGCGTCCCTCGGTGA 44668 28 96.4 33 .........................C.. CGCGGAGCGGTCCGACGCGGAGCCGATCCGGCA 44729 26 89.3 33 ....A...--.................. GCCGGGTGAGCGCATGGTCATCCGCGCGTCGGA 44788 28 92.9 33 .......................C..T. TCTGATCCACCCTGTGTTTTCGCAGGTCAGGGG 44849 28 100.0 33 ............................ GCCGATCGCTACCGCGTGGGTCCGGCTCGGGAC 44910 28 96.4 33 ..............C............. TGGATGGCGTACGAACGTGTGGCGGGTCCGTTG 44971 28 89.3 33 ..............C..T........T. GGCATAGGTCCGGTCGGGGCACCCGCTCCTCCA 45032 28 92.9 33 ........................AC.. ACGCGACGAGATGTGGTTGGCCAGTCGCGATCT 45093 28 92.9 33 .C...................G...... CTTGGGCTTGGCCGCCATCTGCGTGCCCGCGTC 45154 28 89.3 24 ......................GA.C.. CAGCCCGCCGGTTCCGCCGGTGCG AA [45171] Deletion [45206] 45208 28 82.1 34 A...A..T......G...A......... CTCCAAGCACATTCACGTCGTGCAGCTCGAGCAG 45270 27 89.3 33 ..............G..-......A... CTCGTCGCCGTGGCCGGACAACAGTACGCACCG 45330 28 75.0 32 .C..A....A.A..C...A........G TACGGGACCTGGTCGCTGTGCACCCCGGTGTC A [45354] 45391 28 92.9 20 ..............C...........T. GCGCCGTTGGGCGTTTCGTA Deletion [45439] 45439 28 85.7 33 ..............G......G...G.T GCCACTCCCCTACCCTTCGACGGTCTTCGCGCG 45500 27 85.7 33 .......T....T.C..-.......... TGGGTAGCCGCCATAGGCGAGCGGGTGCAGCGT 45560 28 78.6 32 ..T...T.......CT..A......C.. GGTGCATTCGACGCGTGCCCCACGACCGGGGC 45620 28 82.1 33 ......T.T......T...A....A... CAGGCAGGTCTCTGCGGAACTACAGCCGCGGCA 45681 28 82.1 33 ..G.A....A....G..A.......... ACAAGACAGCCGCCCCGCGTCCCTATGATGACA T [45688] 45743 28 89.3 33 C.T........A................ TACCGGGCCCGCCGCGGTCCGGCGACCGTCCCC 45804 28 100.0 33 ............................ GATGAGCGCCCGCCGCTGGTGTGAATGCAGTCC 45865 28 96.4 33 .......................A.... CACCGGGTGCCACTCCGCGGGGAGGGTGGCCAG 45926 28 96.4 33 .C.......................... GGGTGTCGGGTTCTTCGTGTCGTGCCCGACCTG 45987 28 96.4 33 ...................A........ GCCATATCGTCATACCGCCATAGGGCCCAGGTA 46048 28 100.0 33 ............................ GGTCTGCGGATCGGGGAGCAGGGCGGGGTCGGG 46109 28 92.9 33 ........................AC.. ACGCGACGAGATGTGGCTGGCCAGTCGCGATCT 46170 28 92.9 33 .C.......................C.. GGCCGCCCGGTCGCCGTGGCCGTGGTTGATGTG 46231 28 96.4 33 ..............C............. CATCGCCGCCCTGTGGGAGGCGTGGGAGGCCAC 46292 28 96.4 33 .....................G...... GTTCGGGTCGTTGGCCTGCATCACGGCGTTGCG 46353 28 96.4 33 ...........A................ GGTCGGGAGCAGAGGGCCGAGGCGGGGAGAGCG 46414 28 100.0 33 ............................ CCCGATCTGGGCGTCCAGACCGCTGCGCGTGCC 46475 28 96.4 32 ..............C............. GTCAGCAAGGGCGTGTACGCGTCGGTGCAGGG T [46500] 46536 28 100.0 33 ............................ GGCGTGCCACCTCCACACCCGCATCTCGGTCAC 46597 28 89.3 33 ...A....T.....C............. GCGTGCTTACGACTCCTAGGCCCAGGTCACTCC 46658 28 96.4 33 .......................A.... GGTCTGGAAAGCCTGCTCAGCCGCCCAGCCCGG 46719 28 100.0 33 ............................ CTTCGCCCCGGACGGAGACGCGTCATGACCCCC 46780 28 92.9 33 ...............T........A... GCCCTGCGGCGGCGGCTCGAAGACGCTGAGGTC 46841 28 96.4 32 ........................C... TTGATCCAGTCCAGCTTGGACTGACGAACTAT C [46865] 46902 28 82.1 33 .....TT...T.......A........T CGCGTGACCGAGCGGCTGACGGGCCGGGAATGC 46963 28 82.1 32 .A.T....T.....A....A........ GATGACCCCAGCCATGCCCTGGCCGCATATGC 47023 28 78.6 0 .G..A....A....G....A.C...... | T [47026] ========== ====== ====== ====== ============================ ============================================================================================================================ ================== 67 28 93.8 34 GTCGGCCCCGCGCATGCGGGGATGGTCC # Left flank : CCCCAGCATGCTTCCCCCAGATCCCTCCGCAGGAGATACGCACCCGCCCGATCATGCCGCCAACGCACGCGGTCGACCACGTGCCGATTCCACGAAAGACCCGCTCTGAGAACCGCCTCAGCGCTGAAGGCATCAACATGCTGGAAAGCGGGCGTGGCCTTCCCGTAGTCGTGCACACCACACAGCCAGGCGAAGAACCGGCAGCCTTGGCCGCCAGAGACCTCGTTCAGCATCCGACGAGCCGACAGCGACAGGTAGTGGTCCCAGATCTGCTCAGCGACCGCAGCCGTGTCAAATATGTGGGACAGCAACAGGTTCAGTACCCCGCCAGCCCGCTTGGCGGACTTGCCCCACAGCACCCCCAACCAGCCTTGGACCTCATCATCGCCGAAGCGTCCAGTCCCCCCGTCTTCTCGGGGCGCGTTGTCTGCGGCATGCATGCCGCGAGCTTAAGAGTCGCCACCGACATTCGGTCTTCGACATAGAACCCTGGGTGATCC # Right flank : CGGTATCGCTGCAGGCATCCGCTCTCCGCAGAGCCGTGGTCAAGCTGCGTCTGGCCGCAGCAACCTCGTCATGAGTGGCTTCATCGTGTCGTGCTGGGTGTGCGGCTAGAGTGATGATGCCCGCCGCTGGGTCGTTCCCTTCGTGATCATTAGCGGACTGCATTCACACCAGCGGCGGGCACCCATCGAGGCCATGTGGATCCTGCGAGTCCCCTCCCCCACCCTTGAAGCAGGTGCTTGACAGAGGGCTGTGCAGAGGAGGCATCACACCGCTCCTCATGCTTCTTGTGCCGAGAGACGCCGTTGCCGCTTGGCGGCTCAAGCCACCGAGCGGTTCTGTCGCAAACACCGAGGGAGAGTCGGCCGTGGGCACCGAAGGCCGCCCGGCGAGGATGTTCTCCCAGGTGAACGCCCTGTTGCCGCAAGAGTGTTCACGGCGTTAACACTCCGGTCGCCACATGCCGCATCACCGACCCCCTAAAACGTCAGCATCTTACTGA # Questionable array : NO Score: 5.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:-0.13, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCATGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [14-51] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //