Array 1 37640-30631 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPOH01000014.1 Eggerthella lenta strain MRI-F 40 MRIF40_contig_014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 37639 33 100.0 34 ................................. TGCTGTGACCAATCTGCTGCGGCGAACTGGTACG 37572 33 100.0 33 ................................. TGAACGAAACGTGCAGGAACCACCGTAACCATG 37506 33 100.0 33 ................................. TTGAAGTCCTCAAACGTCATCTTGTACAGCTGC 37440 33 100.0 34 ................................. GTGTACAATTGTCAAGTGGTAAATGATGCTTTAT 37373 33 100.0 35 ................................. CCCTTTATTACAGGTACATAAACACCGACCGCGAT 37305 33 100.0 33 ................................. TCATCACCTATCGCAACCTTTCTGATGTACCCT 37239 33 100.0 35 ................................. CTAAAATCCCAGATAGTCGAACACGTTGTTGAAGA 37171 33 100.0 33 ................................. CTCGATGCTGCCAGAAACAGGCGCTTCTGGCGT 37105 33 100.0 34 ................................. AATCTCTGGTACACGGTGTTGTAGCGATTCCTGT 37038 33 100.0 35 ................................. CCGTGAAGCTGCAAGCCCCTCTTGAAACTGTCGAA 36970 33 100.0 35 ................................. CTGCCGATACTGTTCGATCTGCGCATTGTAATTAC 36902 33 100.0 36 ................................. ATCAACAAGCAGATCGCGCTGAAAGACCTGTTCGTC 36833 33 100.0 34 ................................. ATCACGCGCGCAGAGTACAAGACGGCCAACACGG 36766 33 100.0 34 ................................. CTACGAAAGGCTGAACAGGTACTACAAGAACTAT 36699 33 100.0 35 ................................. ATTTATTACCGCTCACCAGAGACATAATAGCGATA 36631 33 100.0 36 ................................. CCCTGATGGAGCACAATGGTCAGCGGCTCATACGTC 36562 33 100.0 33 ................................. AAGTATTCTTGCTGATCTACGATATTCGCGCCG 36496 33 100.0 34 ................................. CTGCATGACGAGGATATCGCGCTCGACCCGATCC 36429 33 100.0 33 ................................. GATCATCAACTGGATCGATGCGAACCTGCAGTG 36363 33 100.0 34 ................................. ATGACGATATGGTAAGGAGGAGCGCATGAACCAG 36296 33 100.0 34 ................................. ATTCCCTTTGGGAACGGCCAGTGGAGTTCGCCGG 36229 33 100.0 33 ................................. ACGTCCAGGTTGCCCGCGTATCCGGGCACCTGC 36163 33 100.0 34 ................................. TCGAACATGACGTGCGGGATGCCGATCAACCGGA 36096 33 100.0 34 ................................. CTGCAGCGCGGACATTGGGCGGTTGCGAATAGCG 36029 33 100.0 35 ................................. ACCGTCTCGCTCGTTGCCTTGGTAGCCGTGTTCTC 35961 33 100.0 33 ................................. CAGCATATGGAATTTGACATTTTGACGTTCGGG 35895 33 100.0 32 ................................. CCGGGTAATCCGATCTGATATCGCGGCGCTTG 35830 33 100.0 35 ................................. ACTGTTCCGGGCTGTACGCGTAGGCGATCCACGAG 35762 33 100.0 36 ................................. GGGCTCCGCCTGGAGAATATAGAAGAGTACTGGAAA 35693 33 100.0 34 ................................. AACCAAGGGGGCGTCGATCAGAACTGCATGCGCT 35626 33 100.0 36 ................................. TGAAAGCCGCGAGCAACTTGCGCGAGCAGGCGCAGC 35557 33 100.0 35 ................................. ACGTCCTCCGCCCGGGAATAGCGCGTGAGCTTCGC 35489 33 100.0 34 ................................. GAGGATGCGCGCTATCCCATCGACGGTTGCGGCG 35422 33 100.0 33 ................................. AACACGCAGTTAGAGTAAGTCATGCAGTCGCAC 35356 33 100.0 33 ................................. CTGCCGATACTGTTCGATCTTCGCCGAGACTTC 35290 33 100.0 33 ................................. AAGCCCGCGATATCGTCCTTGTTCTGCGTCACC 35224 33 100.0 34 ................................. ACGCAGCTCGGTATGCTGAATTCGTCTAGCGCCG 35157 33 100.0 34 ................................. TGAAAGCCGCGAGCAACTTGCGCGAGCAGGCGCA 35090 33 100.0 35 ................................. CGCATCAAGGTCGATGCGGGCGCGTCCAAGAAGGA 35022 33 100.0 34 ................................. ACGTCTTTTCTAAAGTCGATGCAAGAGTATTTTT 34955 33 100.0 33 ................................. ATAATCTCGGTTTCGACATGCACGCGGTCGCGG 34889 33 100.0 34 ................................. ATCAGCACCAACGCGTGCTGCTCTGGGTTGCGCT 34822 33 100.0 34 ................................. CCATGCCCATTGCCCACCACAGAACCGGGTCATT 34755 33 100.0 33 ................................. CGGTTTGATCTCCGGCATCTCGAATCCCTCCAT 34689 33 100.0 33 ................................. TGTCCCGGGACAGCGAGTACAGCGAGAAGATGG 34623 33 100.0 34 ................................. AAGTACTCCTGCTGATCGACGATATTCGCGCCGA 34556 33 100.0 33 ................................. CTTATTGGCGATCTCAACACCAACCGGCACGAA 34490 33 100.0 33 ................................. CTCCATACCGTCACGCCCCCGAATAATAGCATC 34424 33 100.0 33 ................................. TCGAAATACCCTTGCTCGAATTCCGGCAATTCG 34358 33 100.0 33 ................................. TGATACCACATGCCCCCGTATTGCATGGCGTGC 34292 33 100.0 35 ................................. CGAAACGATCGACGTAAGTACGGCTGTTGAGCGTG 34224 33 100.0 35 ................................. TCGTCGAGGGCCATGTCGCGTTTCGCCTCGTTGGT 34156 33 100.0 35 ................................. TACAAAGCGAAGGACGCTATAAAGCATATCCGCCA 34088 33 100.0 34 ................................. CGTCAACTACGAGGAAAAGATCCCGTGGGACATG 34021 33 100.0 34 ................................. CATTCGGAAGATAAACCGCCGCGCGAGCAACACA 33954 33 100.0 36 ................................. GCGCGTATGCGGAGCTTTTCAACGTCACCGAAGCGG 33885 33 100.0 32 ................................. ACGATCAGCCCGCCGTCTATCCGATGGCGCAG 33820 33 100.0 36 ................................. GAGCGGGACTGCGCCGAGGCTGTCTACGACGCCAAC 33751 33 100.0 36 ................................. TCGCTCGCAGCAGTGATGCTATGCGTGCCCGAACTC 33682 33 100.0 32 ................................. CCAAGCAACAGGTCTCCCAAGCCGAGATCGAC 33617 33 100.0 36 ................................. CAGCGGCGCTGGCATGGATTATTGCGACTTGGGCAC 33548 33 100.0 34 ................................. CCGTTTTGTCTGCCCTGGGACTTGGTGGAGCTTG 33481 33 100.0 33 ................................. CGAGGAGTTTCGCCCCTATCGCGATCCGTCCGC 33415 33 100.0 35 ................................. TTCCTGCACGCAGAGGGCGGGCCGCGCACGTGGTG 33347 33 100.0 33 ................................. TGCACACCCTTGCCGAAGATGCTCAGCATCGGG 33281 33 100.0 35 ................................. ACGTTGACCTACGCTGAGAACATGCAGGACAATTC 33213 33 100.0 34 ................................. TCGGCAAATCTGGGACGCTGGAAGCCGCTGAGGC 33146 33 100.0 34 ................................. GAGCTCGCCTGTGTACCCGTCGTTGGTGACGATG 33079 33 100.0 34 ................................. ACGTTGCCCGGATCGAGCTTGAGCGCGCGCTCGA 33012 33 100.0 34 ................................. ACGTTGACCTACGCTGAGAACATGCAGGACAATT 32945 33 100.0 32 ................................. AGCCCTCGCTCGCAGCCTCGTAGCGAAGCCTG 32880 33 100.0 34 ................................. AGCATCTCGAATTTCGCGGCGAGCGATTCGTTGC 32813 33 100.0 35 ................................. AAGGCCGCCAACGCCAAGTACAGCCTGGAGGAGAC 32745 33 97.0 33 ........T........................ AAAGCAGTCATCACAACGAGAGAAAGGGGCATC 32679 33 100.0 33 ................................. AGGTACGCGCGCGCCCTTCTCGGTCTTGTAGTC 32613 33 100.0 35 ................................. TCGACGACGGCCCTCACGTCGTCGATGGTGCGGCC 32545 33 100.0 34 ................................. TATCACATGGAGCGGACGAGGTTCTCCGCGCGAG 32478 33 100.0 34 ................................. ATCTTGGGCGTGCCGGGAGCGGGCAAGAGCTTCA 32411 33 100.0 34 ................................. ATGGCGAGTACTTGGACGTAGTTGACGGTCGCCG 32344 33 100.0 35 ................................. GACTTGGCGTCGGCCGCGGCGCCGGACAGCGCCTC 32276 33 100.0 33 ................................. GACAACGCGATGGCCAAGGTATCGACCATCGCG 32210 33 100.0 35 ................................. CGCTCGCAGCATAACGAAACGTTGGCTACAGCCGC 32142 33 100.0 35 ................................. ACGCACTCGTAGACGTCGGCCGGGGTGTAGCAGTC 32074 33 100.0 36 ................................. AATGAATCGATCAAGCGCGCCAACGGCGAACTCACC 32005 33 100.0 34 ................................. GAAACCGTGCGCGACGGCGGAAGCAAGCTGGACG 31938 33 100.0 33 ................................. CGCGCCACAGAAGGCGCACCTTGCGGGTATCGG 31872 33 100.0 33 ................................. GGAGAAACATATAAAAAGGACGGTGTAATCTCG 31806 33 100.0 35 ................................. CAGTTGATGTCTTTTCGCAGGTCGATGGCGCACGC 31738 33 100.0 34 ................................. AAGCCGACGAATACGCCGGCGAACGCCATTCAGC 31671 33 100.0 25 ................................. AGGCCCTGTCGGCCCGGTCGGCCCT Deletion [31614] 31613 33 90.9 34 ...GGC........................... ATGTCGGCCTTGGTGAACTCGGACAGGTCGAAGC 31546 33 100.0 33 ................................. ATGCTACTAGACGATTTTTTTGTTCCGAAATTG 31480 33 100.0 35 ................................. ATGATGACCACCGACTCGTCCGCGGTTCCGTAGAA 31412 33 100.0 35 ................................. TAACAGACCGAAGCCCGTCCGGGCGGGTCGAATAC 31344 33 100.0 35 ................................. CATGTGTTGCGTCCTACCGCGTCACTGATGATGCC 31276 33 100.0 34 ................................. ATCGTGTGCGGGACGAACGACGACAAGCTGGACG 31209 33 100.0 34 ................................. GAGGACGGTGTGGATCCATTACGACATCACCGGG 31142 33 100.0 37 ................................. GAAAAGCTGCACCGGCGTGCCGACCGTGATGCCGTTA 31072 33 100.0 36 ................................. GGCACTGACGTGAACGAAAGCGTCAAGGCTGCAAAC 31003 33 100.0 33 ................................. CCCACCGCGATCACCCAGAACGTCGAGTACCTG 30937 33 97.0 33 .............C................... ATGTCGGGGAAAAGGCGCGAACCCATGTAGGCG 30871 33 100.0 38 ................................. CAGGTAGGCGTTGACGGCCTTGTCGTTGGCCTCGGCCA 30800 33 90.9 36 ..T...T...................G...... GGCACCGCGGTGTACTCCGTGCTCGAGAACGCGCGG 30731 32 93.9 34 .................-..............C TGTTCGGGTTGGCTGGCAAGCTGAACGCTGACAC 30665 33 75.8 0 .....GTT.A..T.....C.C..........G. | C,T [30649,30661] ========== ====== ====== ====== ================================= ====================================== ================== 105 33 99.5 34 GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Left flank : TTGCGCGGCGATCTAGATGGCTACCCGCCGTTTCTATGGAAGTGAGATGGTTGGCATGCTGACAGTGATTACCTACGACGTGAATACCGAGGATCCGGCGGGCCGACGTCGCTTGCGAAAAGTGGCGCGACATTGCGTCAATTACGGTCAGCGTGTCCAGAACTCAGTGTTCGAATGCGTTGCCGATGCTGCGACGATGGTTCGTATCAAGAGCGAGCTCGTCGAGCTGATCGATCCGGAGAAAGATAGTTTGCGATTCTACAGTCTTGGAAGCAAATATGAGACGAAGATTGAGCATGTAGGTGCGAAGCCAACGTACGAAGCTGAAGGGTTCTTGGCATTGTAGGACCATGGTGCGAGCACGAAGCTCGCATATGACATACGTGAGGTTCGCACCAAATAGTGTGACATAAAGATGCCTGACGCGCTTGTTGCGTGTACCTTGTTTGTCTAATGACACTATATGTTGATCGAAGCAGTAAATTTGCACATAATATTGC # Right flank : CGCGCGCAGCTGTCGTGGTACGGCCGAGGCGTGGTCGGTCGTACCCCTCGCGGGCGCGCGGGTAGAAGCAGGGTATCCGGGTTGAAATCGAGCAGCGTTTCGGCAGGTTCTGTCGCTCCCTAACGAAGGGGCGACCGATCCTTGCCGTCGCTTCCTATCGAGAACGCGGATTGATTCGCTGATTCCGAGTTTTGCTCGTCGGACGTCTGCGCCGAGTTGCGAAAGGCGCAGACGTCCTTCGGATCGCTACTCCACCACCAAATCAACGAACTCAAACGTCGTGCAGTCAACCAGGCCGCGGTTCGTCAGGCGCAGTTCGGGCAGGCATGCTAGCGGGATCAGGGCCATCGTCATGAACGGCGACGGCATGGTGCAGCCGATCTCGGCCCATGCGCCCTCCAAAGCATGTACCTTCTCGCTCATCGTTACGGCGTCGAGCGAGTCCATCAAACCGGCGATAGGAAGCTCCACCAACCCCAGGATCTCCCCGTCGGCGACCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.20,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //