Array 1 1018719-1019225 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP031012.1 Alcaligenes faecalis strain Mc250 chromosome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	============================	=================================	==================
   1018719	    28	 100.0	    32	............................	ATCAGCCGCGCCATGTTGCCTTGAGCACCGAT 	
   1018779	    28	 100.0	    32	............................	TTGATGCGGCCAGCGCACACCAGCGGCCAGAC 	
   1018839	    28	 100.0	    32	............................	AGCTCGGTGATGGCAGCGATCAGATAGATAGA 	
   1018899	    28	 100.0	    32	............................	GTGACAGCTAAAGAATGGAACCTGCCCGGCCT 	
   1018959	    28	  92.9	    32	............A....T..........	TTTCGATGGCCAGGGATGCTATGCACAAAATA 	
   1019019	    28	  92.9	    33	.........T..A...............	ATACTGGGACGTTGTGGGCTGGTTGTCCACCCG	
   1019080	    28	  75.0	    32	......C..T.AA....TG.T.......	CGCTGATCGTTCGATGGGGGGCTGATTCAAAT 	
   1019140	    27	  71.4	    31	....-...TT.CC..A.....G.G....	AGCTTGTGGGTCTCTCTCATGCACATGCAAA  	
   1019198	    28	  71.4	     0	.........TC.A.GA..C...G.A...	|                                	
==========	======	======	======	============================	=================================	==================
         9	    28	  89.3	    32	GTTTGCTGCCGTGTAGGCAGCTTAGAAA	                                 	       

# Left flank :   ACGCTTAAATCGGGATTACGCAGGGCGGCTTGTACATCACAGTGTCGGTGAACCAGCCACGCCCCACCACAGAAATCCGCATCCCACACCACAGGCGGCCCCTGCCGAAGGCCGGCATAAGCCGCATAGGGAGACGCAAGATTGAAATCGCCAAACATGACACCGTTTCCTGAAGATCAAAGCCAGCGCAGGCTAGCACTTGAGCCGGAAAGAGGCAGTCAGGAGATTGTGTCTATTAGTTCTTTCTGGGTGTTTTGAGTGAATTAGAAGTTTATTTGCGGTTTATGGGGGAAATTGCTTGATCTTGTGTGACTATTTTTTACAATAAATTTGATTAGTGCATTCGGGATGATTGCCTTCTCCTTGCAGAAACCCTTTTTTTATTGGTTTTGAAATCTTATTTAAAATCAGATGCTTATGAAATGGCCTGAAAAAAGGGTTTTGGTGGCAGAAAAAGCCATAAGATAGAACCTGCTTGGCCTTCAGGGATAGACGCTCTA
# Right flank :  ATCGTTTAATTTCAGCTGTTTAGTCAGGTTTTTGTAATTGGCTATCGCCTGTCCAGTTGCTAGACCGCTGCTAGTAGCGTCCCTGCCGCATATGCAGGTTAGGGCTTACAGCCCCAGCCTGCATTAATTCCAACTAATCACCGAGCATCAGAAGCCGCTGGAAGTCCTTCATTACCCAGTTTTTCTGTTTTACGCTGCGGCAACTTCCCATTCAAAATGAAGTACGCCAGCAGACCGATCACCAGTCCCCAGAAAGCCCCGCCAATCCCGAACAGCGTGATATTGGCTGCCGAAGCCAGGAAGGTAATCAAGGCTGCTTCCCGCGACTTGACGTCTGCCATGGCCCCCGCCAGGCTGCCGCCAATGGTGCCCAGCAGTGCCAAGCCCGCCAGCGTGGTGATAAAGGTTGCGGGGAAGGCCATGAATACAGCGGCCAGCGTGACCCCAAAGACTCCAACCAGAATGTAGAACACACCGGCGGCAACCCCGGCGACCCAGCG

# Questionable array : NO	 Score: 5.53
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTGCTGCCGTGTAGGCAGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [6,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-8.00,-7.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-25] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0.37   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
//