Array 1 1159571-1158900 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_RYFM01000001.1 Listeria monocytogenes strain 41H05 contig00001, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	=============================	=====================================	==================
   1159570	    29	 100.0	    35	.............................	ACGATTGAAAAACTGCAAAAGGTCGCAGACTTCTT  	
   1159506	    29	 100.0	    37	.............................	TTTCCCACTACTGCCTTAAAATGCGTGCCTGGCGTGA	
   1159440	    29	 100.0	    34	.............................	ACATGCGACACAGTTCGCGGTGAAATTCCGCAGC   	
   1159377	    29	 100.0	    36	.............................	ATCTCTATCAATTGGCAAAAGTGAATTTGTGGTAGT 	
   1159312	    29	 100.0	    35	.............................	TTGTCATCATATTTAAAAACTTTTATTAACTCACT  	
   1159248	    29	  96.6	    34	..............T..............	ATTTTTAACATAAAAAATAAGCCTACTCGGCTTT   	
   1159185	    29	  93.1	    36	..............T...A..........	ATGTGTAATTTTATTGGCTTCATTGATTAGTGTTTC 	
   1159120	    29	  96.6	    35	..............T..............	TTATGACTTCATCACCTTCCATGTAACACTATTTT  	
   1159056	    29	  93.1	    35	..............T...........G..	ATCACTCCCGGCTTATCTAGCGGATTCCCTTGTTT  	
   1158992	    29	  96.6	    35	......T......................	GGAATCACGGATAGTCAGGCGAAGATAACTAAACC  	
   1158928	    29	  79.3	     0	......A.......TCA.A....A.....	|                                    	
==========	======	======	======	=============================	=====================================	==================
        11	    29	  95.9	    35	GTTTTAGTTACTTAATGTGAAATGTAAAT	                                     	       

# Left flank :   GGCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACTATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGTAAAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGAGACCGACAGAAAGTTGTAAGTGGCTGGGGGAAGGGAGGTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG
# Right flank :  CCCATTCAGATTTAACTCCATCACCATCCATCAAAAACAAAAAAACGTGACTGCCAAACTCGCAGTCACGTTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACATCCTCTTTCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCGCCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCAC

# Questionable array : NO	 Score: 5.85
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTTACTTAATGTGAAATGTAAAT
# Alternate repeat :   GTTTTAGTTACTTATTGTGAAATGTAAAT

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:79.31%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-1.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [10-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.28   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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