Array 1 3598703-3597398 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027860.1 Ahniella affigens strain D13 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ========================================= ================== 3598702 34 100.0 33 .................................. TTTGTTCGGCCAGTCTTTCTTCCTCCGTTGGAG 3598635 34 100.0 36 .................................. TCAATGAAGTTCCTGTGCCGCTCCGCATCCGCCATA 3598565 34 100.0 34 .................................. ATGGCGTCGATGGTCGGTACATGGCTCGGATTCA 3598497 34 100.0 39 .................................. TTTGTGCTTGCGCCATGCTTGCCTTTGCAGCGACAAGCC 3598424 34 100.0 40 .................................. CACTGTCAATGAGGGGTTGCCAAATTGATCCCAGTCAGGG 3598350 34 100.0 34 .................................. CTGGTCCAAGGAAAAGGATGAACCCTTTGTTCAC 3598282 34 97.1 37 ........................A......... TTTCAATCTGCGCCAGCGCATTGAGCGCTGACGTGAT 3598211 34 97.1 35 .......T.......................... TTGTCTGGCAAGTGCGGCTCGTCCGTATGGGCCAT 3598142 34 100.0 36 .................................. TTTCGTGGAATTCGATTTTTGTCAAACTCTTCTGAA 3598072 34 97.1 36 ................................G. TTATGGACACCCTCGGTCGGGTGAATGATCAAGACC 3598002 34 100.0 37 .................................. TTTCGTTCAACCTTCCAAAGACTTCACGGCCACGACC 3597931 34 100.0 37 .................................. TTTCATACACAAGTGCCGCCAACCGTGTGTCGGGAAC 3597860 34 100.0 34 .................................. TTTGCGACATCGACGTGCATAATTACGTCCCAGT 3597792 34 100.0 37 .................................. TCTGATTCGTACGGGATTACCACCTCTACACCAACCT 3597721 34 100.0 37 .................................. TGATGGCTTTCTCGCCGGTCCAGACTCGCGTAGTCAG 3597650 34 100.0 38 .................................. CTTCCAGCGAGTCAAACGGGCCAAACTTTGCGTCGGCG 3597578 34 100.0 41 .................................. CCTTTGCAGAAGCGTGCTTGATAGTCAAGCATTTCTAACAG 3597503 34 100.0 37 .................................. TTCATGGTTGTCCGCCGATCAGCCGCCAACCCAGTCA 3597432 33 85.3 0 ....G....................GG..-...T | C,C [3597400,3597404] ========== ====== ====== ====== ================================== ========================================= ================== 19 34 98.8 37 GTCGCAGCGCACTGGCCGCAGAGGCCATTGAGAC # Left flank : TGTGAGCCCAAGTCCATTGTTCCTCCTGGGAGATGTCTATGCCGACGTTCTCCTTACCTGCTTGACTTCCGAAGCCAGAGCCGAGATATAGAAAGCGGTATCGTGCTCTCTGACAACGAAGACCGGATCGTCGGCTAGTCTTTCCAGCCAGCGACGCGCCTTGCTCCGATCGGATCGCTCCGGCGATGTAGCGTTTTCGTGGCTTTGGGTACCGAATGCCAATGCACGCTGCTAGGCTGCAGAAGCGATTCGGAGGAACCGTTTTGGCCAACAGCCAAATATTTGCGACCTGTCCGTTTTTCCTTATCTGGATCAGTTGATTGGATCAGAATCGTGAAGCGGACTATCAGTAATCACCCCTACATAACTGACTTTCAATCTGAATTTCCCAACGAAAATGGCGTTTTGGCGAATTCTTGGATAATCTTTCCAATCGTCGGCCGAGGTTCCTCCGAACCAGCGGCCAGTGCGTTGATTGGACGAGAGAAAAAAGGTGCGCA # Right flank : TTGGCGTTTAATCGCAAGTTCCCCCTGGACCCCGGATCCCGCTTACGCGGTTTCCAGGGTGACGACAATAGTGTTGGCCATTTCGCCGCAAGGCCACACTTCTCCTTCTCCCGCGCGAGCGGGGGAAGGCCGGGATGGGGGCTGCTTGCGGTGGGCTTGCAGGTCCGTCCTTTCGCCCGGTGCGGCGACCAAAGAAGTAGTTCTGGAAGACCATCACAATATCGGGGGCGTCGAGAGGTCTCTGGTCATCAACGTAGCAAAGTACGGATACATCCTTTAGACTGCAAAATGAGCCTCTTGGGGAGCGTGACGTGGCGGAGTGGTCCGAGCGAGATTGGGAAATGCTGTTGACCGAAATTCAGGAAGGCAGTGTCTTGCCTGTGATTGGTCCATCGGTTGTGACTTCCGGTGAATCTGGCTCCAATTGTTCCCTCTATCGGGAGATCGCCGAACCCATGGCGAGGCGGCTCGGCGTCACAGCAAAAGAGGACGCCAGTGCC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCGCACTGGCCGCAGAGGCCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 3613209-3615633 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027860.1 Ahniella affigens strain D13 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ======================================== ================== 3613209 34 100.0 38 .................................. GCGTAGGTGCCGGTCAACCCGGCGGCCAGGTACTGGGG 3613281 34 100.0 38 .................................. TTTCGTTGATGTCGACGTTGCGGAGGGTTTTGTCGATC 3613353 34 100.0 31 .................................. TTTGACTTCCCCGATGGTGCTGCGGTCCATA C [3613386] 3613419 34 100.0 36 .................................. GGCCATTTTACAGGCCAGGGGTATGGTCCCCCCCAG 3613489 34 100.0 35 .................................. TAGTACCCGCCATCGAAGCCGAAGTCCTCGTCCCA 3613558 34 100.0 40 .................................. TTTGAGCCGTCCCAGTCCGCGCACGCTCATCACGATCACC 3613632 34 100.0 37 .................................. TTTCGATCCCAGGTACTCACGCAGTTGCCCGTAGGTT 3613703 34 100.0 39 .................................. CTTAGGACTTCCGCAACTTGTGGTAGTGGAGCGTGGTTT 3613776 34 100.0 35 .................................. ATTTAAGGCCCCAGGAGTCCCGACCGCGTAGGCCG 3613845 34 97.1 33 ..........................G....... TCTCACGCCGTACGCCTTGGATTCTTGTACTAG 3613912 34 94.1 38 ....T..T.......................... TCAGCAGTCTTACGACCGTTGTACACGCCGTCACGTTG 3613984 34 100.0 35 .................................. AGGCACAGGGGCATAGCAGACAACCGCTCCACCTC 3614053 34 97.1 36 .........T........................ TTGTTAAACCACAACGCACGAACGTCTTGCAACCGA 3614123 34 91.2 36 .......T.........TT............... AACGAATATGTTTTGAACCCAGGGCTCCAAGAAGGA 3614193 34 94.1 34 ..................T......A........ TTTGCATTGTTGGTCATCTCCATGATGTCTGCCC 3614261 34 97.1 36 ..T............................... GTGATGTACATCAAGCTGTCGGACTCAAAATTTTGA 3614331 34 94.1 39 .............A....T............... TTTGATGCGCCAACCAGGGCACGGATGTCGTGCTTCTCT 3614404 34 100.0 39 .................................. TTTGTCCACCAAAGCTGGTGTACAGAAACCCTGCGTTAG 3614477 34 94.1 36 ..............T...T............... TTTACTGCTGGCATGTCGCCATGAGCAACGATAACC 3614547 34 97.1 38 ...................G.............. TTTATCCGCTGCCTGTTTGAGGGCGTACAACTCTGAAA 3614619 34 100.0 34 .................................. AGATCATCCATAATCCTCTGTCTAAGACGACCCA 3614687 34 100.0 36 .................................. AGCAGATGAATTCGGCAATTGTCACTTCCGTGGCTG 3614757 34 100.0 33 .................................. TTAATCGCGAACGCGTCGAGAAGGGTCATGCCG 3614824 34 100.0 35 .................................. CATATAAAAACATGGTGAATGCCAGCTGAGTACTT 3614893 34 100.0 36 .................................. AATACAATCAAGGTTCAATCTGTCGGCCGTCTCTGT 3614963 34 100.0 34 .................................. TTGAGTGTCGGCGATCTGGTGAACCCGCGGCAAC 3615031 34 97.1 35 .............................C.... TCGATTTGTTCATCGCACACCCTTGGAGGGTGAGC 3615100 34 94.1 36 .........A...............G........ TCGGTGTAGGTGTTGAGCGTGCCGCGGCTGGTGCTG 3615170 34 100.0 36 .................................. CTCCGCGCCATTGCGAGCTTTCGTCGGTTCATGTCG 3615240 34 94.1 40 ..................T.C............. TTTGGGAGGAAGGGTCGGGGCTCTGTTGCGTTGGCTGTTC 3615314 34 91.2 37 ............C...T.T............... CTCATTGTTCTGCACGGAGCGCAGTTCAGCCGTGCGC 3615385 34 97.1 38 ..................T............... TTTGGGTGGTGAAGCGAGGGGCGACCTGGTCGTTCAGT 3615457 34 94.1 40 .....G......C..................... TTTTGTGGACAAGGGGGACCAACTCCCCGAGGCCCGCTCT 3615531 34 91.2 35 ..A...T..T........................ TTTGGATAACCTGACCAACGGCAGCACCATACCGG 3615600 34 85.3 0 ....................A........TGTT. | ========== ====== ====== ====== ================================== ======================================== ================== 35 34 97.1 36 GTCGCAGCGCACTGGCCGCAGAGGCCATTGAGAC # Left flank : CGCTTGTTGAAAGACGCCGGGCCGGAAACGCAGATACGTTGGTATGGGCTCAATGATGATGGGTATGCGCGTTCGGGGGCAATTGGGAGTTCTCCACCCAGTCGGCCGCCGGCGGTGAGGGTGTTGTGAGGGTGGCTCGTTCCGATAAAGTGGCCTATCTGGCCGTCAAGCGAGTAATGTACCGTTCCGGCACTTCTTCCGGCGACAATGGTGGTCACGGGCTCAGAATCGCGTCATTTCGAGTGGCCGTTGGAGGAACCGATTTTGGTGTTTTGCGGTTTTCTACCAGGTTGACGCGATTTCGGTATCAGAACAGATGCTTACTCAAGGATTACAAAGCAAACCCTGATGAATCACCCCTACTCACTTGACTTTCCGAACGAAAATCGCGACAAAGATTGCGATTTGGTGCTCTTTGCCAAAGAATTCCAAATCACCGGCCGAGGTTCCTCCGAACCAGCGGCCAGTGCGTTGATTCGACAAGGGAAAAAAGGTGCGCA # Right flank : CCCGGCCTACACTTGCTACTCCATGACCACGTCGCAGCAAGTATAGGGAGAACGCGGCGACCGATGTCCGCGCTCATTCGGTGCGTTCATTGAATAGTTTGAGCTGCGACCGGATCAACGTTTCGGACCGAAGGCAAACCGACGTTACTTTGACTCGGCCATGCACGAAATCCAACGAGTCGACGCTCAGACCTGAGTAAAATGAAGGGCCGGGACTTTAGCCCCGGCCCTTCGCAACTACGCCTGCTTTGAAGGGCGGGTGCCGAACAACCCATAAAGGCTTTGCTCGCGCTTGTGCTGCACGTTCAACAGTGGCGAATAGAAGACAATCATGCACTGCTCGACATCGTCTCTGTCGACCTCTGACTCAACACGCGCGACATAGCAATGGGTAGGCTGGTAAGCCATGATCGCCTTCCACTTCTCATGGTCTAACAACCTGTCTTTGACATCAATCGACTGACCAATGTAAATCCACCTTTCCCTGCCTAGGGCATCAA # Questionable array : NO Score: 2.89 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCGCACTGGCCGCAGAGGCCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.00,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 3 3616565-3617649 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027860.1 Ahniella affigens strain D13 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 3616565 35 82.9 37 C.GA....AG.T....................... TTCATACCGCTACCCGATAGTGAGTCAGCTTGCCCTT 3616637 35 94.3 34 ......C......A..................... TCGAAGGTGAACCCGGACGAACCGGTAATCACTC 3616706 35 94.3 34 ................................T.A CTGGCGCAGCTCCGTAGACAGCCTGCTCGATCTG 3616775 35 97.1 36 ........A.......................... TTCACGTGATAGGACTGGGTGGTTAACCGGTCGCTG 3616846 35 100.0 36 ................................... GGAGCACTGTGTCCGCAGCAATCCAATCCGACCCAG 3616917 35 97.1 35 ....T.............................. TCGGGAGCGTCTTCCCAGTGACGAATATTAATGCC 3616987 35 97.1 35 ...............A................... GTGGAGCCTGACACACACCGTTGACCAACTGTTGT 3617057 35 97.1 32 .................A................. TCTCAGGGTCAGACAGAAGAATAGGAGCGCAC 3617124 35 100.0 37 ................................... CTGCTTTTGGTCTCCACCACCGGCTGCGGCGTCATCG 3617196 35 100.0 34 ................................... TTCACTTTCGCAGGCGTGCACTTGGAGCTTGGCC 3617265 35 88.6 34 .C........G..................C.T... TTGGTCGGTCGGTTCTGCAGGCATGCGATCAAAT 3617334 35 97.1 33 ...........T....................... TTCGTTGTTCCAGAACACGACCTCTGAAATACT 3617402 35 97.1 38 ..................................C TTTGAGGTCGACTCGCGGTGCGGCGGCAACTAGGCAGC 3617475 35 100.0 37 ................................... CCATGGGATTCGCGATCCGCAGCAGTCAAGCCGCGAG 3617547 35 100.0 32 ................................... TCGACCTCGTAGACGCTGCCTGCCAGTTCTAG 3617614 35 100.0 0 ................................... | A [3617646] ========== ====== ====== ====== =================================== ====================================== ================== 16 35 96.4 35 GTCGCAGCGCACTGGCCGCAGAGGCCATTGAGACT # Left flank : TAACAACCTGTCTTTGACATCAATCGACTGACCAATGTAAATCCACCTTTCCCTGCCTAGGGCATCAACGCTAACAAACGCGTAGATGCCGGGAAACGAATTGCCGGCAAGATGAATCGGCAAGCGACAGAAGTCTGCGATGTAGCCTTTGAACGTTCGAAATCTCATAAAGTCCTATTGGTAAGAGTTGCGGAAGACGCAACTGCCAGTTACCCTCGAACTCCCTGACCGGGGGGCACAAGGATTGCAAGTTGCTTTTGCCCTGATTAATCGCCCGGGCTGGCGGTACAGCCCGGGCAACCCTCACACGGCAATTGAAGCCTAACAGACATTTTTTCGCGGGTCGTGAGATGCACTGGTCGCCCTTGTGTTTCAAATACTTGCGCAAGAATTCAAAAGAGAGCCTTCCCCGGGATGGCGCAGATCGGCGCAAAGAACGCGTAGTCAATAGATCAGCGAGGCCATCACTTGGGCCGAGTCCACCGAAGCCTGATCGTCCA # Right flank : TCACACGCTGGCAGCGGCCGCGAGGATCATCAGAACGTCGGGGCGAAGTGTCAAAGAACCTACGACGTCCGCATGACTTTAGGATTCAACCACTCGCACGGAACTGGCGATGCACTCCCGTAAGTGTCATCATCCACCTCAAGGCGGTTCCCGCTTTTCGGTACTTGGGGAGACTTGCATGGATTACGAAGTCATCACGCGGTTTCATGGCGTTGGCCAAGGGTTGTTCGTCTCCGGAGAGATTCTGGCGCTACCAGAGGACCGGCACGATCGGGAAGATGGATCAAGGCGCTCATTCTCCTGGGTGTACGACTGTGGCACCAGCTCCGGTCAACAACTACTGCAAGAACGAATTCTGGAGTATTGGGGAACGCGCCCGTCCAAGATCCTGAGCGCTGGCTGTGGGTGTTCAACGGTTGGCGACTTGTTCGGTCGATTCGGCTCAAGGCGTGACGGTGGGAAAAGCAACATCATCAATCTCCTGATGATCTCGCACTTCG # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCGCACTGGCCGCAGAGGCCATTGAGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.00,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA //