Array 1 164237-162130 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJZN01000006.1 Salmonella enterica subsp. enterica serovar Braenderup strain fnw19J13 SRR1233940_NODE_6_ID_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 164236 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 164175 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 164114 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 164053 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 163991 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 163930 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 163869 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 163808 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 163747 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 163686 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 163625 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 163564 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 163503 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 163442 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 163381 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 163320 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 163258 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 163197 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 163135 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 163074 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 163013 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 162952 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 162891 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 162830 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 162769 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 162708 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 162647 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 162586 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 162525 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 162464 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 162403 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 162342 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 162281 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 162220 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 162159 29 89.7 0 A...........TC............... | A [162132] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181621-180495 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJZN01000006.1 Salmonella enterica subsp. enterica serovar Braenderup strain fnw19J13 SRR1233940_NODE_6_ID_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 181620 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 181559 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 181498 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 181437 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 181376 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 181315 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 181254 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 181193 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 181132 29 100.0 31 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTG 181072 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG A [181071] 181010 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 180949 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 180888 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 180827 29 100.0 31 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTG 180767 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG C [180766] 180705 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 180644 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 180583 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 180522 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //