Array 1 428353-426191 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018317.1 Raphidiopsis curvata NIES-932 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================================================================ ================== 428352 33 100.0 38 ................................. CAAAAAAGTTTAACCGGGGTGTAATGCCGTTAGTGGTA 428281 33 100.0 43 ................................. AAAGAAGACATCTCTAAAGATGCGATGGAATTGGTAGTTAGTA 428205 33 100.0 49 ................................. CTAGAGGAGGAGGATTCTGGATCCTGGATCCAGAAGCTGTACGACTGTA 428123 33 100.0 38 ................................. CAATCGGGTTAATAAAAGACTCCAGTTTATTATTGGTA 428052 33 100.0 38 ................................. CAGTACCCGGCATTGAGCCGTACCTCTAAAAAGAAGTA 427981 33 100.0 46 ................................. ATAACTTTTTCGTATTGACTGGCTGGAATCGACATAGTCCCAGGTA 427902 33 100.0 39 ................................. TTCCAAATGAACCACTAGAACTTTTTGCAAGTAACGGTA 427830 33 100.0 43 ................................. GGTGATGCTAGATACTGCCGGGACTTTCAACAAGACAACTGTA 427754 33 100.0 40 ................................. ACTCAACTACAGCCGTACCCCTGGGGTTTTTTTGTTGGTA 427681 33 100.0 40 ................................. TGGGTCAACTCCACAAGCGAGGTAATCCTCGCCTGTGGTA 427608 33 100.0 40 ................................. AAGAATCTGTATTCTCCTATTGTTAAGTCTTGATGGTGTA 427535 33 100.0 39 ................................. AATTGTTAGACGAAACTAATCTCATACATCCTCCTAGTA 427463 33 100.0 42 ................................. TCAAAACACTATCTCCAACAAAATGAGGGAAATAGTAACGTA 427388 33 100.0 41 ................................. TACTTTAGGTTGTCTCAAGATGTTGGTGCTGATGACTAGTA 427314 33 100.0 76 ................................. CGATAAAAATAAAGGTGTTGCTAACACCAAAACAAGCCCCGCTTCCCTCTACCCCAATCACTCCCATTCATCTCCC 427205 33 100.0 39 ................................. CTTGCCCAAACCCTGAACTACCCAGCCCACAAACGGCCC 427133 33 100.0 43 ................................. AAAAATTATTTGGGTTTAGTCCCAAAAAAGATAAACGGGACCC 427057 33 100.0 44 ................................. TCCTCTGAGGAAACCGAGGAAGAACAAGTGCCCGAATGGGTCCC 426980 33 100.0 44 ................................. AATCTACTGTTAGACTTTATTATAAAAACAAGTAAAGATGTCCC 426903 33 100.0 40 ................................. GGTTTCCTCCTCCACTTGAGGGGTGGAAGAGGAAGAGCCC 426830 33 100.0 41 ................................. GCAACTTCACCCTCTTTATTCGATTTGGTGTGAGTTATCCC 426756 33 100.0 44 ................................. TGACTAGACGTGCCAAACCCAAAGAAGATCCTAATCAGGCGCCC 426679 33 100.0 42 ................................. CAACTACTCCCAAAGCAAAGTGTCTTTAGGTAACTTTTTCCC 426604 33 100.0 45 ................................. TTTCTACAACTTTACCCAGAGCCTCTTCCTCAGCGTCCACTAGTA 426526 33 100.0 38 ................................. GTAAAAGTTGACTGTATCGTCGCATAGATCAGCATGTA 426455 33 100.0 44 ................................. CACCCCAGTGCGATCGCTACGTCGGGAAATTGTTGGTTAAAGTA 426378 33 100.0 51 ................................. TTCTTCGAGTCCCCAAGCACAAGTCAGCACGGACAACCGGTTGTCCTGGTA 426294 33 100.0 38 ................................. TACTAAATTTTGACTTTCCCGATACCCAAGAATTAGTA 426223 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ============================================================================ ================== 29 33 100.0 43 CGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Left flank : TATCTAAACATACCATTCCTCAAATAGAAGCTTGGGGAGTGGGAGTACCCATAGTGCAATTACCCAATTCTATTATTATCTGAGTATCTGTGCCAGATATGGTTTTAAGCTATATGATATCTGTCTATTCTGATATAAGCAAAAATAAAATATACAATAAAATTTTTGTTTTTGAATACTAGTTATTTGAGCATGAATCAGTTATAATGATATAGCTAGATGGGTTAATTAACGATTAGTATTGAGATTATTTATTGAGTATTAATTAAGGGCTAAAGTGATATTAATGACAGTAAATTCAGTGATTAACGAAGGAAATGCGAAGGTCAGGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTGGTAGGGGTGAAAAACAGAGAAAATTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGTAAGGGTTTAAAATGGAGGGGTA # Right flank : TCTTCCTATTACCACAGAAGTAATGTTAAAAGCAGCAGAATTATGGGCTGAAGCGAGAAATAAAGGCTTTAGATGGTGATGTTATTTTAGCGGCTCAATCTATTTTTTTTAGTTGCTAATTATGGACATGAGGTAATTATTGCCACGAGCAATAAAAAGCATCTTTCTATTTTTACTGATGCTAGGGAATGGGGAGAAATTTAAAATATGAGAGCGATCGCCTACAATAAGCTATAAGATCGCACCTCCTCAACTCCCCAAACAGCGATTATTCATTTTTATTAAACTGGTACGTCTGACTCCTCCTGCGCTAAAATATCCTTAGTTCAAGGAATTGGCTATGAAAATAAAAGCAATTATTTGGGAAGAAGACGGTGTATGGTGTGGTTCTGTACCAGCTTTACCAGGATGTCATACCTGGGGTGAAAGTTACGAACATTTATTAGAAATGTTGAAAGATGCTGTTCAAGGTTGGTTAGAAGTTGCTAGTCAGCAAGAAG # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 2 2721078-2720071 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018317.1 Raphidiopsis curvata NIES-932 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 2721077 36 100.0 38 .................................... TATTCCCAGCGTAGCCGGGAATGACGAGCTTAAACTTA 2721003 36 100.0 37 .................................... CAGTTGGTTTTTCAAATGTAGCCGCGCGGCCACCTTG 2720930 36 100.0 39 .................................... CTCCAGAAACACAAGAACAAGAAGTGGAGCCAATTATGC 2720855 36 100.0 39 .................................... GAGAGCTGTTTTCAAGCAGGAGACTTCATCCTCTAATCC 2720780 36 100.0 35 .................................... CTTGAGGAGTTAGATGACGAAGAAGATGTCTACTA 2720709 36 100.0 39 .................................... AAAACGTGGGCTGGACAAGCCCTTTAACACCTCTACGGT 2720634 36 100.0 40 .................................... AAGGTTTGGCTAACAGTCGTGGTAACAAGAAGCTGTTACA 2720558 36 100.0 42 .................................... ATCCCGGTACTCTAAATCCCAAGCTTGTGCAAAGCCTACTAG 2720480 36 100.0 38 .................................... TCGTAGACGTTGTTGTCCGGCAGGTCAACTGCCCTCAG 2720406 36 100.0 38 .................................... AGAAGTATGGGTTGGACGAGTGCGTAGACTCGTTTCGC 2720332 36 100.0 36 .................................... GTTACACAGAGCCACGAAAGAACGCATAAACGAATG 2720260 36 100.0 38 .................................... GCAACTTTTTTAAGCTCCTGATACTTTTGCTGGAGAAA 2720186 36 100.0 44 .................................... AAGCTGTTCAATCACAAGAGGCAATCCCTTTTGTGGTTGTTCAA 2720106 36 69.4 0 .........C.A.......AT.G.TAA.T..AA... | ========== ====== ====== ====== ==================================== ============================================ ================== 14 36 97.8 39 GTCTTGACCTTCATAAGAAGGAATAGGTATTGCGAC # Left flank : CTATCTATGGGAATAGTTACATCTATCTTTAGATAGATATTTGGGTAAGATAGGGATTTGGGTAGGTATTTTACGACATTTTATCTAACCTAAAAACTTTTATGCGAGTAATGAAATATCCCAGTCAATGTAGTACCTAATAGGGGGTGAGAATGAAGTGGTCTCAAAAAAATAAAATATACATAAGTTTTAGGGAATTATTTTCCTGTAAATGTGTTATAATAGTGGCATAAATGGGGAAAAATCGGTATAAATATTTCAGTAATAGCAAAGGATAATGATAAAAATAAAGACAAAAAAATCAGTAATTAACGAAGAAAGTGCGAAGGTCAAGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTCAGGGGAGTAGGGGTGAAAAACAGGGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGCAAGGTGTTAAAATCGAGGG # Right flank : CTATATGTTACAAAAATATTTAATACATAAAGTTACGTTTTCACTTTTAAATAAATATCTCTTATCTGAACGTTCACTGTTCAGATAAACTGATTGATAAGTTATTAAAGTTATTTAGCAAACAATAAGTAAACTCAAAATCACCTTGATAAGTCTAGTTATCATATCTGTTCCTATTCGTAGGTTTGGATAGTTCTTTTAGGTAAATGGTTGAGACCAAATATCCCAATTCTCCTTATTAAAAGGCGATCGCCACTTTTGAATTAGAATTTGCTCAAGTTTTTGGCGTTGTTGTTTAGAGGAAGGAGCATCCCACCAGAAAGCGATATTTACAGCTGTAGAAAGTTTATAACGATAGTGTAAGTCTTGATAACTATCTTTGCCAACATAATTTTTTTAAAAACGGTAATTTTTCTGGAGTTTGAAATTGGGGTTTATGGGGTTTAATTAACATTTATATCTATTTATCATTATCAAAAACATTGACAAAATCCTGAAGA # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCATAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.90,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 3 3304371-3304624 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018317.1 Raphidiopsis curvata NIES-932 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 3304371 36 100.0 37 .................................... AGGCTATCAAACGCCCAGGAGGCGTTCCAAAGCCCAT 3304444 36 100.0 38 .................................... ACGCGGTGATGCCAGCAACTGCAGGCATTTCCAACACG 3304518 36 100.0 35 .................................... CTCAGCTCAACCAAGAACTTGTAGAAGCGGAACAA 3304589 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 4 36 100.0 37 GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Left flank : TTGAGGAATGAAACTCAACTGGGATAATTATAATTAATTGGGTGGAGTTGTGCGATTCAGGTTTATGTTTTATGACATTCAATCCGAACTACAAATTTTTATACGGGTATTAAAATGCAGCCTAAACATTTCGTACCCGCTAACCTACAGTATGGCATTCACAATAAAAAATAAAATATACATAAGTTTTAGACAATTATTTTCCCATAAGTGTGTTATAATATTGGAATATTTAGGGAAAAGCTCGATATAAATATTTAAGTAATAACAAACAACAATGATAAAAATAAAGACAAAAAAATCAGTAATTAACGAAGAAAGTGCGAAGGTCAGAGAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAAGGTTTCAGCCATTATTTTGAGGGTGGTGGAGGTGAAAAACAGAGAAATTTTGTTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGTAAGGGGTTAAAATGGAGGG # Right flank : CATCACAGGGAGCTGCTCTAAAACAGCGAATATTACATTTGTCTTGACCTTTGCAAGAAAGATTTTATTATATTGGTGTAAGTGTTAATAGTATTAATAGTTTTACCGGATTGATAGAGATATTCCTGGTAATCTCTAAAATTAGCAGCAGTACAATTAGCTATATGGATGTCACTTAAATAAGATATGTAACTACGAATTATCCTATTATAATTTATTCTAGAGTGTTTAGATTTACCATCTAACCATTGATTTATAGCATTAGTAATGGCGATCGCCAGTAGTTTAAGGGAGGAAAGTGACCTAGGGAATGAATTCCCAAAGGTGGTTTTTCGGGATGATTTACCAAAAATTTTTCAATGTTTTCAGATATTTTCATCCCGTAAATATGTAACTCAGAGAATGTGATTACTGGATGGCATCATAGAGGCTAGCACCTTTAGCACCAGAGAGGCTAGCACCTCTGAGGAAAGCACCTCTGAGGTTAGCATCAATGAGGT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //