Array 1 926917-927076 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013242.1 Clostridium sporogenes strain CDC_67071 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 926917 30 100.0 35 .............................. CCTCCTAGCTAAAATCTATTGTTATACCTATTTTA 926982 30 100.0 35 .............................. TTGCTTTTTATAAAAGTATCTAGTTTTTTATTTAT 927047 30 93.3 0 ............................GC | ========== ====== ====== ====== ============================== =================================== ================== 3 30 97.8 36 ATTGAACATTAACATAAGATGTATTTAAAT # Left flank : AAAGGTTTTGTCTTGAATACAAATGGACAAGAATCAATCATTAATGCTGATAGTGCTGTTGTAGCTATTGGATATTTATCTGAAAAAGACCTATATAACCAGGTTAGATTTGATATTCCAAATGCAAGGCTGATTGGAGATGCTAATAAAGTTCAAAATATTATGTATGCTATTTGGAGTGCATATGAAGTAGCTAAAAATATTTAAATAAACTTTTGCGAAAAACTAGAATGGATTTATATCCATATCTAGTTTTTTGTTTTTTACTGAAATTCTATAAGTATATGAGTGTTTGTTATGTACTACTTGTGTATATTTAAAGTTTTCCAAGTGAATTCAAATTCAAGACCTATTCTAAGTATTGATATATAAGGATTAGAATAGGTTTTTATTATATATTTTTTTAAAAAGCAAAATCACTTGGAAAAATTTCTTTAAAACCTTGTAAAATCAATGGGTATATGCTATTCTTAGAAATAAGGAATGGCTATTTTACTATG # Right flank : CAGAGAACCTAACTTTACGATTTGGAGTAAGTTGTTTATTTCCTGTAGAGGAGAAGTATGAGTCTCATTAATGAGCATAGTATATATATCATATCTAATTAAATTTTTCCAAGTGAATTTAAATTTAAAACCTATTCTAGCCATCGATATGTAAGGATTAGGGTAGGTTTTTATTATGTATTTATGAAAAATAAGAATCGGTTGGAAAATTTTCTTTTAAACCTTGTAAAATCAATGGGGATATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATGGTTGAACAATAACATAAGATGTATTTAAATCAGTTTATATTAAGAATTTTGTCCTTAGGAATAAGTTGAACAATAACATAAGATGTATTTAAATAATTATAATTTATTAGTACCAATAATTTGTCATGTTGAACAATAACATAAGATGTATTTAAATTCTACAGATATAAGAGAAAAGATTACAAGGCCTTCGTTGAACAATAACATAAGATGTATTTA # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 927357-927711 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013242.1 Clostridium sporogenes strain CDC_67071 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 927357 30 100.0 34 .............................. CAGTTTATATTAAGAATTTTGTCCTTAGGAATAA 927421 30 100.0 33 .............................. AATTATAATTTATTAGTACCAATAATTTGTCAT 927484 30 100.0 35 .............................. TCTACAGATATAAGAGAAAAGATTACAAGGCCTTC 927549 30 100.0 36 .............................. TTGAATTTATCTGTTTTATCTACCTTATTAGGTTTG 927615 30 96.7 37 ............T................. CTGATGAGTTAATACTATATCTTTTAGTATTACTTAA 927682 30 93.3 0 ............................TC | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 98.3 35 GTTGAACAATAACATAAGATGTATTTAAAT # Left flank : CCTTGTAAAATCAATGGGTATATGCTATTCTTAGAAATAAGGAATGGCTATTTTACTATGATTGAACATTAACATAAGATGTATTTAAATCCTCCTAGCTAAAATCTATTGTTATACCTATTTTAATTGAACATTAACATAAGATGTATTTAAATTTGCTTTTTATAAAAGTATCTAGTTTTTTATTTATATTGAACATTAACATAAGATGTATTTAAGCAGAGAACCTAACTTTACGATTTGGAGTAAGTTGTTTATTTCCTGTAGAGGAGAAGTATGAGTCTCATTAATGAGCATAGTATATATATCATATCTAATTAAATTTTTCCAAGTGAATTTAAATTTAAAACCTATTCTAGCCATCGATATGTAAGGATTAGGGTAGGTTTTTATTATGTATTTATGAAAAATAAGAATCGGTTGGAAAATTTTCTTTTAAACCTTGTAAAATCAATGGGGATATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : CAGGGAAGCCAAATCTCTGATTTACCGTCTTACTCCTTCGAAAAATAGGAGAAGGAATTTTATATCTAATTAAATTTTTCCAAGTGAATTTAAATTTAAAACCTATTCTAGTCATCGATATGTAAGGATTAGGGTAGGTTTTTATTATGTATTTATGAAAAATAAGAATAGGTTGGAAAATTTTCTTTTAAACCTTGTGAAATCAATAGGTGTATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATGGTTGAACATTAACATGAGATGTACTTAAGCAAGAAATGCAATCATCTGATTTAGAATAATCATTTATATATGGCAATAATTTTTTGCTTTATTACTTCTTGAGTTAAATTGTGGGAGTTTATTGACTAAAATATTTTTCAAAATTAGTTTTAGTTTCACATTATAATTTAGAGTATTATTGGAATTTTAGCCCCCATTAAAAGAAGTTAAATATTTTTATTTTAATGGGGGCTATATAAATTGCTAGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 175902-176244 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013241.1 Clostridium sporogenes strain CDC_67071 plasmid pNPD7, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 175902 29 96.6 36 .................C........... ATATGTATATTTACAAATGAGAGAACAAATTAATTG 175967 29 100.0 38 ............................. GTATCTTATTTTTAGGTAAAACCTCTCTTAAATTCTTG 176034 29 96.6 37 ................A............ TTTTCTATTCTGCAACTCTCTTATAAAAAAAGAACTC 176100 29 96.6 22 ............C................ AAATAATAGTACATAGTTGTAC Deletion [176151] 176151 29 100.0 36 ............................. TTATTTTTTCTTCATTAAACAACCTCCTCATTAAGG 176216 29 89.7 0 ...........A.......A........T | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 96.6 34 TTTAAATACATCTAATGTAGAAGTTAAAC # Left flank : AGGACAATAAACGTTTGCGGAGTTTAGTTTAAATACATATAATATATAAGTTAAGCTATTTTCCCTTTCATTAATTAAATAAAATAGGTCATTAAATACATCCAATGTAGAAGTTAAACTAAAAAAGTAATAATAAATTATTTTAAATACATATAATGTACAAGTTAAACCACCTTATTCCATTAGCGATATTCCAAATATGTGTTGTTTAAATACATCTAATGTAAAAGTTAAATGTTTTATTTTTTTATAAATCTGCTATTTCTACTGCAAAAATAAATCCATGTGAATCTCTAACTATATGAGTAAAAGATAAATTTCCCTTAATCTCCATAAGTATATTTAAGTTACTGTTTTGATAATCAGTATTTAAGCATGTTAAATCACTTCTATCACAAGGGGTATCATTAGGTAAAATGTTAACATAGCAAGCTCTATCTATGCTTTTTTTCTTCATTTTTGCACCTTCTCTTTCTCTATTTATATTTAAACTTATACTT # Right flank : TCAATAAAAATAAGCTGTTTGTAAATAATAAAATGTTTATATAATTATTATAACATGCTTTCATTATATGACTTGTGAACTACCACCACCTAAGAGGTGGATGGCTTCGTGATCAATACTACTACTGTAGCAAGTTTACTCACGCTCAAAAGGTCGAACCAACCTCGCTTATTACCAAAATTATATAGCTAATTTCAGTACTATCCATCTCCCACCTAAGAGGATGGGAGAATTACGCCCGTTAAGTTAAATTTTTAAAAGAAATATAAATTACTTAGTGAATCCTGATAAATTAATGTTTTACCAGTATTTGGTTGAACAATGAGATTAGTAAAAGATAAATTGCTAAACCTGTAAGAGTTATCGAATTCATCTAATTCAGTTGGCAACATTTCTTTTAATATTATTAATCTCTCATTAGGATTATATTTTTCTCCTGTAATATTAAAATTATCCGTTAAAAATAAACTTTGTATTCTTATTAATTTTTCATGTGCTTG # Questionable array : NO Score: 2.63 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.14, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTAAATACATCTAATGTAGAAGTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 233223-233518 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013241.1 Clostridium sporogenes strain CDC_67071 plasmid pNPD7, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ========================================= ================== 233223 27 100.0 39 ........................... GGACCTGCAGAATTAAAAATAGATATAGATAGCTTTGGG 233289 27 100.0 39 ........................... ACTTTATCATTTACCATATTAACTACATGAATATAATGT 233355 27 100.0 40 ........................... CAAGTGGAAGTCCTTTCAATATTTTTTTTAGTTGTTAAGT 233422 27 96.3 41 ................A.......... TCACCCAATAATTTAGCTTCAAGGAGCTAAGACTTTCTAAT 233490 27 81.5 0 ..........A.....ATT...G.... | G,A [233502,233505] ========== ====== ====== ====== =========================== ========================================= ================== 5 27 95.6 40 TTTATCTTAACTATATGGAATGTAAAT # Left flank : AACTATGAAGAAGGTCAAAGAGTTGAGCAAGATACATTTGTTTGTAAAAGATGTGGACATAAGATTAATGCTGATTACAATGCAGCTAGAAATATAGCTATGAGTGATAACTATATATCAAAAAAAGAAGAAAGTGAGTATTACAAAAATAACAAAAATATGGTATAATTACTTCAGTTAAGATAATAAGAACAGGGCGATTTAACGTCCTAAGGCTGAGGGATATTTCCACTCGGCAAGGGTTAATTTCGGATATTGTGTTACCATCCGAACATTCCATGATTAATGCGGTTATATACTCGTATTTTAATTTTTTGCAGTGAAGCTATTTTGGACCTTATGTATTTGAAACCTTGAAATCAATGATATTTGAGTAAGTTCTATATATTACCCAAAAACACTACTGGAGATTTACTGCAGAATAAGGCAAATTAGTTATATGTTTATGCTGTGTAATTTAGCTTATACCAGTAGGTTAAAAGATTTATAAAATTAGGGGG # Right flank : TTTAATATTTGTTTTTACAAAGCTAAATTTTAAAGAAGTTTAGCTTTATCTTTTAGGTAAAAAGCTGTCGCACTAATTTTTTTAGTGCGACAGCCCCATGATGATGGATAATTATAGAATTAATATATTATTGCAGTAATAATATAACTATACTATAAGCAGTTGCAGCTGTACTTAGTATTTTTAATATAGATTTTGCATCTCTAAAAATTATATACAATACTCTAAAAACAAATAAGAACATTTTTATTATATCTTTATTAGTTAGCAAATTGTAGTTCCCCCTTTCTATTATTTTGGTTAATTTATTAAATTTTACTTAAATATGCTATAACAAACAACATTTTAGATGCTCTAGCTTGTTTGAGCTACTTTTATAATACAAATATGATAAATTATCAAAACATAATAATATTTTACAATTGGGTAAAGTTGGAACAGGGATTAACTTTAAAATTAAAAAATAAAGCAAATAATTAAAATAAATGAATGTATGATTT # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTATCTTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.48%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //