Array 1 18133-16778 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQCV01000017.1 Neisseria meningitidis strain M14418 M14418_S17_cleaned_ctg_6601, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18132 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 18066 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 18000 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 17934 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 17868 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 17802 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 17736 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 17670 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 17604 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 17538 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 17472 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 17406 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 17340 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 17274 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 17208 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 17143 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 17077 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 17011 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 16945 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 16879 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 16813 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //