Array 1 2150335-2146044 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016987.1 Vibrio cholerae strain FORC_055 isolate MFDS chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2150334 28 100.0 32 ............................ TTAACGCTTTGAGAAAAACTTAAAAGAATAAT 2150274 28 100.0 32 ............................ TGATAGTAATCAGGCCGTTGATTATCAAAATC 2150214 28 100.0 32 ............................ AGCTAGACGTGAGCTAATATCTTTTACTGCGC 2150154 28 100.0 33 ............................ AGATTTGGGAAGAAGAAGCTACCGTGTATATCT 2150093 28 100.0 32 ............................ AGCTTAAGGTATTCAAACGCTGGCTCTTTTAA 2150033 28 100.0 32 ............................ AAAGAGACCGTGAAAATCATCGACAGCCAAAT 2149973 28 100.0 32 ............................ ACTTCCTGATTCTGGCGGTGGTAACGGTGGTT 2149913 28 100.0 32 ............................ TCATAACCATAGAGCCCCTTTTCACGCCAAGG 2149853 28 100.0 32 ............................ TGTAAAGGTGGTTACAAAAAAGAAACAAGTAG 2149793 28 100.0 32 ............................ TGTCTGAAGTGCGAAAAGCATCGTCTGAATAA 2149733 28 100.0 32 ............................ TAGCCGCTGCCGCTCTTTATTGGTGGGCTACT 2149673 28 100.0 32 ............................ ACTTCCTGACTCTGGCGGTGGTAATGGTGGTT 2149613 28 100.0 32 ............................ AACTTCAAAGGATTCATTAAGAACTTTGCCAG 2149553 28 100.0 32 ............................ AATAAATTCGAGATTTACGATTGCCAACTTCA 2149493 28 100.0 32 ............................ ATCACCCAAGCCTGAGAACGACCCGACAACTT 2149433 28 100.0 32 ............................ GTATCGTGAACACCGGCGAAGGTGACACGACG 2149373 28 100.0 33 ............................ TGGAACAGGTCGCCGCGGAGCTCTTTTTCGATT 2149312 28 100.0 32 ............................ TGAAGCAAAAGAGGTAATCACCCCTGCTATTG 2149252 28 100.0 32 ............................ ATGACAGGATATTGGCAGCAAGCGTAGCCAAA 2149192 28 100.0 32 ............................ GTTAGTATCACAAACCGCCGCCATTCTCGAAT 2149132 28 100.0 32 ............................ TCCTGCACTTCGCCGTCGATAGGCTGTAGGAA 2149072 28 100.0 32 ............................ TGATCAGCTTGCGAGTAGTTTTATCGCGCGTG 2149012 28 100.0 32 ............................ AGCTATCCATCGCAGCACTAACCGGGTCTGTC 2148952 28 100.0 32 ............................ ATGAACATCAACAAGTGCCGCGACTAGGTCGA 2148892 28 100.0 32 ............................ AGTAGATTCGAGAAGTACGAGAGCCAACAGAA 2148832 28 100.0 32 ............................ AATTACGGTATTAACGTCACCGTTATGGAATT 2148772 28 100.0 32 ............................ TCAACATCAAATTCACTCAGTGCAGGAGTTGC 2148712 28 100.0 32 ............................ TCATAGCTTTCACTCCAGTGATTTACGCCATC 2148652 28 100.0 32 ............................ ATAAATCAAATGCCTCCTTCATTGCGTCAGCT 2148592 28 100.0 32 ............................ ATAGATTGCGGTGCTAAGCGCGGCGATCTAAT 2148532 28 100.0 32 ............................ AAAAGCAGCAGCAAACGCGCTGTACCGTGCGA 2148472 28 100.0 32 ............................ GCTATGGGGCTTTGTTTACTTCCATGAATGAA 2148412 28 100.0 32 ............................ ATCAGCAACATATGCACCACTCAAGCCAGATG 2148352 28 100.0 32 ............................ GCGTCGTGCACGAGTCGCGCCTTCCTGCCTAC 2148292 28 100.0 32 ............................ ACCAGTTGAGTTGTCAAAGTTTGCTGAATGCT 2148232 28 100.0 32 ............................ GCCACCAGATACGTCGAAGCCGATACGCTTAA 2148172 28 100.0 33 ............................ ATAACTAAAAACATGCGACCATACCCAAAAACT 2148111 28 100.0 32 ............................ TATTTGTGGCAAAGAACTGGAGTCATTCGAGT 2148051 28 100.0 32 ............................ TAGTGGGTAGCGAGTATGGAACCAGATTTCTC 2147991 28 100.0 32 ............................ TGAGTCTGATAACACTCTTTTCATCTTAAATT 2147931 28 100.0 32 ............................ TCATCGACATGCGCGTTTATCACGAGGCGCAA 2147871 28 100.0 32 ............................ TAAATAATACGTACAGCCAACAATGAGAGCGA 2147811 28 100.0 32 ............................ AAAATCACTTCAAGTTATCGCTCTCACCATTG 2147751 28 100.0 32 ............................ TATCCTGAACTTCACGCCGCTTTTGTTCGCGC 2147691 28 100.0 32 ............................ GATAACGTAGAGATGCACTTTATTATCGGAGA 2147631 28 100.0 32 ............................ CGCTTGATATCATCAGGGTCTTTGTTGAGCTT 2147571 28 100.0 32 ............................ ATCATCCTCGTAGCTGTCGAGATACGCTAAGG 2147511 28 100.0 32 ............................ TCGAACATCACCTCAGTTAAGTCCATTGCACG 2147451 28 100.0 32 ............................ AGTAGGAGACATTGATCCATCTGTGCTGCGGT 2147391 28 100.0 32 ............................ AAAATCGCCAGAGCATTGCTCAAAAAGAAACC 2147331 28 100.0 32 ............................ AGACGAAAGAGACAACGAGCGCTACATCCTCC 2147271 28 100.0 32 ............................ GTCTTTAATGTACAGGTTTTCAATATCCTGAC 2147211 28 100.0 32 ............................ TTAACAGTAATATAACCATCAGTGACAAGTGA 2147151 28 100.0 32 ............................ TTATCACGACAGGGCGAAATTGTTGAACAAGA 2147091 28 100.0 32 ............................ GCAATAATCCGTCGCGAACAAAAGCGCAGGGA 2147031 28 100.0 32 ............................ AGGATTCACTCGCGCAATGTCGTATCCGTTTT 2146971 28 100.0 32 ............................ AAAATCACTCCAAGTAATCGCTCTCATTGTTG 2146911 28 100.0 32 ............................ ACATCCAAAGGGTACAAAGGACTTGGTAATTG 2146851 28 100.0 32 ............................ CAAACGCAAGGGATAGATCATGAGCAATAACG 2146791 28 100.0 32 ............................ GTTATCTTGGGTATGTCGTCACGTTTGGCCTT 2146731 28 100.0 32 ............................ TGGTGCATCCAAAACACTTAACTCACTGGTTG 2146671 28 100.0 32 ............................ GATTGATTGGGGCGCATAATGATTTATCTCAG 2146611 28 100.0 32 ............................ ATTGAAATGTTCTGAACGATGAAAATCACATC 2146551 28 100.0 32 ............................ AGTTGAGCCAGTTCCAGACCCTGACAACCCAA 2146491 28 100.0 32 ............................ TGCCTCGTGGGTGAGCGTTTCCTGCACTAACC 2146431 28 100.0 32 ............................ TTTTGCTCAATAAATGCGGCTCCCATGTAAAT 2146371 28 100.0 32 ............................ TGCTTTGGGTTCCACCCAGTCAGATGGCCGTT 2146311 28 100.0 32 ............................ GAATGCGCACTGGAAGTGGACGGTCAAGTGGT 2146251 28 100.0 32 ............................ GCTCTCGATATCGGGCACACCCTACACGCGCA 2146191 28 100.0 32 ............................ TAGCAACGGCTCGAACTCTAGCCCGTGTTCTT 2146131 28 100.0 32 ............................ TTGAAAGCGCATACGGTAAGACAGTGTTTGCT 2146071 28 89.3 0 ...........C.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 72 28 99.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATGTAACTTATGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCTCAAGATGGGGGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCTACTGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTAACCATTTATTTTTGATCTTTAAAAATACGCTTTTAAAACAAATAGTTGCAACGGATTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGTATATTTATTAGGGTTTTCTTAAATGGTCTTTTCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAGAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //