Array 1 411-77 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFME01000994.1 Klebsiella pneumoniae strain 2DZ3F15B scaffold_998, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 410 29 93.1 32 ............TG............... TGGTGTTGTCCACGGTTACCCGCTGGCTGGAA 349 29 93.1 32 ............TG............... TCGTGTTTTCCACGGTTACCCGCTGGCTGGAA 288 29 100.0 32 ............................. AGTGATTTGACCTCATCCAGAAAGGCACAGCC 227 28 93.1 33 .......T.................-... GGCTGGATTTCCGTCAGTTGGTCACCTGCTGCA 166 29 86.2 32 ............GGA.......G...... TTACGGACTCCTGTTTCGGGCAGTGGATTAAA 105 29 86.2 0 ...G...A..........C......A... | ========== ====== ====== ====== ============================= ================================= ================== 6 29 91.9 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : A # Right flank : GCACTACCAGACCCGACTGGACACCCGTAATGGGTACTCCCCCCCCACGCGGGGGCACCGACCTAAAAACCCGACTG # Questionable array : NO Score: 3.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 1104-407 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFME01000384.1 Klebsiella pneumoniae strain 2DZ3F15B scaffold_383, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1103 29 100.0 32 ............................. GCTGTCAGTACTCAACGTTATAGAAATTCCTC 1042 29 100.0 32 ............................. GAGTGAAAGTGATAGCAAGAGTGTAATGGCTA 981 29 100.0 32 ............................. GCAACTATTGCCTGCATTGCTGTAGACAAATC 920 29 100.0 32 ............................. AATCAATACGCCCTGATGCTTAAAAATGGCCG 859 29 100.0 30 ............................. AGCAACGTTTCCGGATTATATGGCTGGAAA 800 29 100.0 32 ............................. TGGTGTTGTCCACGGTTACCCGCTGGCTGGAA 739 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 678 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 617 29 93.1 32 ............CA............... GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 556 29 96.6 32 ..............A.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 495 29 89.7 32 ............CA...........A... CACTACCAGATCCGAATGGACACCCGTAATGA 434 28 82.8 0 ............CAC........-....A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 96.3 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTGCGCCGGGAGACCGGTTAGAGATCAAGGGGTGAAAGTCCCCGACCATTGAAGGACCAGCAATCCACAAGGT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //