Array 1 53663-49770 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVFT01000008.1 Rothia mucilaginosa strain 470_RMUC 140_159783_2464562_113_,...,121_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================================== ================== 53662 35 100.0 36 ................................... GGCCGTTCGTCGTACTTTGTCCTCTGAAGGACGGCT 53591 35 100.0 39 ................................... GGCCAGAATTACGCGCAGCATCGTCTGAGATTTACCCGA 53517 35 100.0 37 ................................... GAGGTTCAGGCGCGGTATCCAGGTTCTGCACACCCAC 53445 35 100.0 38 ................................... GGTCCACCAATAGTGTTCGTCTGAGATGCTGCCAGCAG 53372 35 100.0 37 ................................... GCCTGGGAACACAACGTTTTCCAGATACCGGCTAACA 53300 35 100.0 37 ................................... GATACTCACGCAAGGGTGAGGCTAGGAGTGCGCAGAA 53228 35 100.0 38 ................................... GTGACTTTTCCTTTCGACGGTTTTTCTTCCTCTTCAGT 53155 35 100.0 37 ................................... GTGATACGCCGCTGGCAGGGGAGGGGCTAGGGGTGTT 53083 35 100.0 40 ................................... GCCCGAGATGAACTTTTCGGTGCTGGGTGCAGGCGCACAC 53008 35 100.0 37 ................................... GACAAGATGCGCGGTAGCGGCGTAGATTTCCTGCATC 52936 35 100.0 36 ................................... GCCCGCTCTCCAACCACCGGAAGTCCTGAGTATCCA 52865 35 100.0 37 ................................... GTCCAGACCAGCCGCTAGGGATCTTTGAAAAATCGAA 52793 35 100.0 39 ................................... GCGGGCTAGCGGGGAGTTGTCATCCCAGGGACTTTAGGA 52719 35 100.0 38 ................................... GAAATCCGGTCTAGGCGGTAAATTCGGTGAAGACTTTA 52646 35 100.0 38 ................................... GGTAGCTTGGAGATGACCTCCTGTAGTACGGGGCGGCT 52573 35 100.0 37 ................................... GGGAGTAGGCGGGTCTGTGGGGCGGTTAGGTGCCTTA 52501 35 100.0 39 ................................... GGCGGTCGAATTTGAGGGCGCACGCTGGGCTGTCGCTCA 52427 35 100.0 37 ................................... GCCTCAGTAGCCTGCTGAATCATACCCTCATAATGCA 52355 35 100.0 38 ................................... GATCATGCGGCCAGCGCATTTCTCGTCCCAGAGTCTTA 52282 35 100.0 39 ................................... GCAGCGGCCAGGGCACTCAGTGTTGTAGTAATCAAGGTG 52208 35 100.0 38 ................................... GGTGCGCAAGATGTGAAACGACGGAACCAGGGGGATGA 52135 35 100.0 39 ................................... GGGGCAGAGCGAGGACGTGCCCAAGGAAAAGGGCGATGA 52061 35 100.0 36 ................................... GTTTGACATGTTGCGTGAAAAGACTAGCGCGTGGAG 51990 35 100.0 36 ................................... GCAATGTACTTCATAGTGTTGTCTCCTTAATTAATG 51919 35 100.0 37 ................................... GTTTGTTGTACACGTCCCCGTAGGTCTTGCCGGCGGG 51847 35 100.0 37 ................................... GGTCCTTGTTAAGCCGAGGCGCTCTAAGAGCAAGAAG 51775 35 100.0 37 ................................... GACACGCGACTGGTGGCGCACCATGTCACTAACGATT 51703 35 100.0 38 ................................... GGCGAAGAAAAACCCGTTTGGCGGGCGAAAATACAGGT 51630 35 100.0 38 ................................... GCCGCCGCGTGAGAATAACGCCACTCCGGCACAGCAGG 51557 35 100.0 39 ................................... GACGGAATTAGCGACGATGCAGCACAGCCGCGCCCCTGC 51483 35 100.0 37 ................................... GCCCGCCAAATATTGAGGTGGAGTCGGTGACCGCGCA 51411 35 100.0 38 ................................... GGCACAGGCCGCTAAGGTTGATAGCCGTCTCACGCCGC 51338 35 100.0 41 ................................... GTTGAAAGTGATTTCGTTTGCGAAACCGTAGACCAGCTGGG 51262 35 100.0 36 ................................... GTGTGAGGTTGCCGCCCCCGCCCCCGCGATTTCAAG 51191 35 100.0 39 ................................... GGCTGCAGCGTTCAAGGTGTTTGGCAGCTTCGGCAAAAT 51117 35 100.0 36 ................................... GAAGTGAAGCTGACGTTAAAGAACTTGTTGAATCTT 51046 35 100.0 37 ................................... GTCACGCGGATTAACCGGGAACTCGAGGGTGGCGGGC 50974 35 97.1 38 ............................C...... CCGGCGACGAGCAGACGCTCAGAGAGGGCGAACTCGCG 50901 35 91.4 38 ...............T...A..G............ CGTCGATATCAACACGCTCACGGGCGACCTTGCAATGG 50828 35 97.1 35 ......................G............ CGATGATGACGGCTCCGCGACGGTTCGCTCTGAAT 50758 35 91.4 36 ...............T...A..G............ CGGGTGGAGAGGCAACCCACCCGGTGCGGGGAGGAC 50687 35 91.4 50 ............C..T......G............ GGCTTTCATTGAGGCCGCGGAGAAAATCCGCGGTACATTCAAAGTACTAA GTTT [50653] 50598 35 97.1 38 ...............T................... GTCAGATTCGCCGAGCATGCCCTCACGAGCCAACGCAG 50525 35 100.0 36 ................................... CTGCAACTGCGGGTTCAGACCGAGCAGGTCAGCGTC 50454 35 91.4 39 ..............C....A..G............ CGAAGGTAGCCGCTCTGAGATGAGCCTGTCGTCGGCGGG 50380 35 88.6 39 G......A...........A..G............ CGTGTTGTATAAGAGAAAGAAGAGTGTGAGAGGGCGCCG 50306 35 88.6 39 .............C.G...A..G............ CACGGGCTTCACCCACATTTTTGTAACGGAGCCGAACAC 50232 33 85.7 36 ........A..G..--.T................. CAACATTGACCGTGGCCGATTCTTCCACTGGACCGG 50163 35 85.7 39 .........T.....T...A..G.......C.... ACGAGATTTACCGTGCTCTGGTCGAGAACGGGAATGCCT 50089 35 80.0 33 ......T.....A..T......G......A.A..A CAGATCAATATCCCCCCGGATGACCGCGGGCCC 50021 35 65.7 37 ....GTTC.G.ACC.T.AG.A.............. CGACCCAGATGCCCACGCAGCCTCTCTGGGAATCCGC TGT [49999] 49946 35 88.6 35 ............A..T...A..G............ CTTCACACGGTAGACGGTTGCGGTAGACAGACCGA 49876 35 91.4 37 ......T........T......G............ AGGCAAACGGGACTGGGGCGGTCTGATTACAAATATC 49804 35 80.0 0 .A......A.....CT.T..A...C.......... | ========== ====== ====== ====== =================================== ================================================== ================== 54 35 96.5 38 ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGG # Left flank : GTTTGACAAGGTGTTTACTGAGGAGATGCTGGCTGGTGGTTATCAGAAGAAGTATTTCCGTGCGGTGTCTCGTTTGACTGCGTTGGCTCGTGAGGGCATGCTCGGTGAGGAGGCGGAGCGCTAGTTCCGCTGTTCGCCGGGGCCGAGCTTTGGCCGGCTCGGGTTTTGATGCGCTGTTCTTTCTAGTCCCGTGAGACTCGAAGCTCGCCCGGTTTGCATGGTTAGCTTGGTTAGTCTGGTTTACCTGAACCGCGCCAACCCCTCTCATACGTGAGGACCCTCGCCGGGTCGCTTAGGAAGCACCCGGCGGGGGTCTTTGTGTGAGCGAGAACCTGGTACGTGACGGGAACATGGCGTGTCGCTCGCATGGTTTCTTCCCTTGCCAGGGAGTTATGCGGGGGTAGATGTGGTTGGAGTGTATAATTTTGCGTGTAGCCTCCGCGAGGTTCTCGCGAAGCACCCGTTTCTGCCGCATGGTTGCGGGCTATTTTCGGGTAGCT # Right flank : CGGGCGGCTCATCCCTGCTTGCGCAGGAAACACCTCAACCTTTCCTACGGTTTCGTAGGGACTTTCCCTAAAACCTCCCTGCTCCGTTCCTGGATCCACCAGAGTCCAGGAACGGAGCTTTTTCGCTACATGACCAGGCTAAAACACCGACCGCAAACCCCACCCACCTGCTGCTACCCGCCTCATCCACACCTCCAAGCAGAAAACTCAACACGCCGACCCTGCGTCATAAACTCGCTGATAAGCCAAAACACCACACCGTGGTGCTACCCTCAAAACCAAGCAGTCAAAGCTGACTGCCCACCATATTCGCTCACACCAAGGAGACACCGATGTCTACCCCTTACAGTGCAGGCGACGAACTTCCTATCTCACTCGTCATGCACACCGTGTACTGCCCCCGCCGCGCATGGATTGAATCCAACGGTGAAAAGACCGACACCTCACAAATGCAAGAAGGGCAATCCGCCCACAAACGAGTCGACGACCCCAAAACATCC # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [80-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //