Array 1 21672-23651 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVX010000024.1 Erwinia amylovora strain Ea169 Ea_169_contig_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21672 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 21733 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 21794 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 21855 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 21916 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 21977 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 22038 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 22099 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 22160 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 22221 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 22282 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 22343 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 22404 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 22465 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 22526 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 22587 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 22648 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 22709 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 22770 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 22831 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 22892 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 22953 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 23014 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 23075 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 23136 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 23197 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 23258 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 23319 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 23380 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 23441 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 23502 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 23563 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 23624 28 93.1 0 ...........A.....-........... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.2 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 34559-36664 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVX010000024.1 Erwinia amylovora strain Ea169 Ea_169_contig_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 34559 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 34620 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 34681 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 34742 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 34803 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 34864 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 34925 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 34987 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 35048 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 35109 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 35170 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 35231 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 35292 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 35353 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 35414 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 35475 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 35536 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 35597 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 35658 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 35720 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 35781 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 35842 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 35903 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 35964 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 36025 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 36087 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 36148 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 36209 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 36270 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 36331 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 36392 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 36453 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 36514 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 36575 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 36636 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //