Array 1 477840-478404 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDEN01000003.1 Enterococcus faecalis strain CBA7120, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 477840 37 97.3 29 ....................................A TCCCTCTGTACATATCAGAATATGGATCC 477906 37 100.0 29 ..................................... GCAGACTTTGGTGGTGCTGGTCGAAGCAT 477972 37 97.3 29 ....................................C GAAGCACGATTGATATTAGCGCAACTATC 478038 37 100.0 29 ..................................... GGCTTGTTGTTACGTGTATTACAGACGGG 478104 37 97.3 29 ....................................G CACACACACGCTACTCACAGGCATTATAG 478170 37 97.3 29 ....................................G TGCAACAAAAGAATATTGTTGTCAATGGT 478236 37 97.3 29 ....................................A TCAGTTGTCGGGAAATTGCCGGAGCGTGG 478302 37 100.0 29 ..................................... CATAGCAGACCAACCTGCTCCATCGCTTG 478368 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ============================= ================== 9 37 98.2 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : GCACAATTAAATGATAAACCAGAAGTCAAATCAATGATTGAGAAGTTAACTGGAACAATTAGTCAATTAATTGGCTATGAATTGTTGGAACATGAAATGGATTTGGAAGAAGATGGCATCACTGTGCAGGAACTTTTCAAAGCTCTTGGAATCAAAATCGAAACAACGAGTGATACGATTTTTGAAAAAGTTATGGAAATTACACAAGTACATCGTTATTTATCAAAGAAAAAATTATTGATTTTTATTAATGCGTGTACGTATTTGACAGAGGATGAAGTGCAACAAGTGGTAGAATATATCTCTTTAAATAATGTGGATGTCCTGTTTTTAGAACAAAGGGTGGTCCAGAACAGATTCCAATATATTTTGGACGAAAACTTTTATTTGAGTTATGAAAAAGCTTAAATTGTTACTGATTAGTGGTTCATTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAGTACGGAACTTTGGAAAAAAATAATTCTCCGAG # Right flank : CAATGTAAATGCTCATTATGATTTACATATGTTTTAGAGTCATGTTGTTTAGTTTTCGCAGATACGATTTGATTGATGTAAAAATATCGTTAATATGTATAAATATGGTTATTATATAAAAAATATAAGTAATAAATTGAAGCTTTGCTAAAGCAAGTGATGCGATTACGAAATTATTTAATTTTAGAGTCACGTTATTTATTACTTTACGAATAGAGAATACGATTATCTATAAATCAAGAATTAATCCCCAATTTATTGAAAATGACACTCCCTGTTTTATTAATATTTCATGCTTTTGTTGTACTATTTGATGATACAAAAAAGTAAAACTGAGGCCCCAATTAAAGTCAAGTTAACCACATTGAAAGATAGAACTTTCAATGTGGTTAAAGATGCTTAATGAGATTCATGAAACATAGAAAGCGGATTAATTTCCTATGCTCTTTATTTGTATATTTTCTTGGGAATCATTATTGATTGTGGATTAAAAAGATAAT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1880034-1879271 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDEN01000003.1 Enterococcus faecalis strain CBA7120, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 1880033 37 97.3 29 ....................................A AGTGGAGCGTTGTTTGTTCATTACTATAA 1879967 37 100.0 29 ..................................... TACGAAAAATACTGGAGCTCCCTCGTCCA 1879901 37 100.0 29 ..................................... ACTCCACGTGCTTCCATTTCAAAAGTTAG 1879835 37 97.3 29 ....................................A TTTTCATAGTGACCATTTGCAATATCTAC 1879769 37 97.3 29 ....................................C TAGAATTTAGTTAAAACAAACAAATTGAA 1879703 37 100.0 29 ..................................... GGTGCACCCGAATGCCACACTTTCTTTTA 1879637 37 97.3 29 ....................................G TTAGCTGGGCGGTTCAATGTGGTCATCTA 1879571 37 97.3 29 ....................................A CGTTTGATTGCAGACATTTGTAAACGATA 1879505 37 100.0 29 ..................................... GCCTGCATTAAGAAATAGCTTGATTGTTC 1879439 37 97.3 29 ....................................G AATAAGTATCCAGTAGTTATGAAGGCTCT 1879373 37 100.0 29 ..................................... GCTAAAGGAATTGATGATTGATATTGTGT 1879307 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ============================= ================== 12 37 98.4 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : GTAACGATGGGGAAAGTAAACGCTGTATTAAATTCAGGAGAAGAACTATACGATGTTTCAGAGGATAGACGTTTTGCTGTGTTAGACATGGGGTTAGAAGATTTAATGAAAATAGAAGAAGTTTGTAAGGAATATAAAAAACCAATACCAACAGAATTTAAATTAATCTATAACGTTGAAACAACAAGCTTTAATACAAAGTATAAATATGACCTTCAATATTCCAATAACGATGCTTTAACTGATTATGATCTCTTTATGTCGTGGTATGAAGAAGTTAAGAAAGAGGTAGAAAATCCACCATTGTAATTTGGATTTTAATAAATTTTCATTTTTTCTATTTATTCGAACAAAAAAATGGCTCTTTGTCAAATAATGTTGGTAAAGAGAAAGTTTGGTATAATGAAAGAGTAGAAAGGAATCAATACATTTTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATAATTCTCCGAG # Right flank : ACTACTTTGAAGTAGTAACGAGTGCCTTTGTTTTATAGCCATGTTGTTAAAAAACAAACTATCACCACAAGCAATCCGTAATTTTTATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGCTTCGATTTTCGAAAACTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAAAGGGAAGAAATCTTGGTAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAAT # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 3 1885307-1884213 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDEN01000003.1 Enterococcus faecalis strain CBA7120, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 1885306 37 97.3 29 ....................................G AACAACGTGGATTCAAACATGTTGGGACA 1885240 37 97.3 29 ....................................G GTTTATATTTGTGTAAAGCGAAATATCCT 1885174 37 100.0 29 ..................................... GTTAATGAAATGGGTTGACAGTGATACTA 1885108 37 100.0 29 ..................................... AATTTTAAAATACGGCAGACCGATAACGA 1885042 37 97.3 29 ....................................G CGTACAGCCATTCGTCTGGCATCTTCAAT 1884976 37 100.0 29 ..................................... AGCACAAAAGGCTGAAGAACAAAAACAAC 1884910 37 97.3 29 ....................................C AAATATTATTGGGAATGCGCTGACTTCTT 1884844 37 100.0 29 ..................................... ATGTAAGTCCACCAAACACTTTGTTATAT 1884778 37 100.0 29 ..................................... GGCGAATAGAAATTCAATCCCACTGTTAT 1884712 37 97.3 29 ....................................T CATGTCAAAGGGCGTTCTCGACCAGCAGA 1884646 37 97.3 29 ....................................T TTTATTACGGCAGGATACACAGAATCAAA 1884580 37 97.3 29 ....................................G ATGAACCGCAAATAAAAAATACAAGAAGC 1884514 37 100.0 29 ..................................... AATTATTGAACGCTTTTTACAAGACTATG 1884448 37 97.3 30 ....................................T ATGAAATTTTTAGACTTATTTGCAGGTATT 1884381 37 100.0 29 ..................................... TCAATGAGTATCGCTAATTTTTTAGCACC 1884315 37 97.3 29 ....................................G CATCACGTTCTGCTTCAACATCGAGCATC 1884249 37 91.9 0 .........................A..G.......T | ========== ====== ====== ====== ===================================== ============================== ================== 17 37 98.1 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Left flank : ACATATATCCTCATCAAGTAGTAAATGCTTCTTTTGACTTTCAAGAGGGACGAACAACAGAAGGTGGAGAAATGACACACATGATTGGCTTTGCCACTTCGCAAGAAAATACCTATGAAGATTTGGAGCAACTAAGCGTACCTGCTCATACATGGGCGGTTTTTCCAAATGAAGGTCCTTTCCCACAAACTTTACAAGAAACCTGGGCAAAGATATTCTCTGAATGGTTGCCTTCATCTGGTTACCAAGTCGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTATAGTGAAATCTGGCTTGCTGTTACAGCTACTAAATAAAGAAAACCCACCATTGAAAAATGGTGGGTTTTTCCGCCAAGAAGGAGAAAGTTTGGTATAATAAACGTGAAGAAAAAAATTAGACCTTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATAATTCTCCGA # Right flank : TGATAGGTGCGCCAAAAATCTTTTTTCTGTTTTAGATCCTTGTTATTATCTTCGAATGAAGAAGAGGAGTGCTAAAAGGTTACTGTTTCCAGTAGCCTTTTTTGTTATTTTTATTTCTTTCATTACCAAAGTTTAGTAAAATGAAAGTATCTTAAATTTTAAGTGAAATAAATTTAATAAAGGAGAACAATGATGGAAGGAAAGATTGTTTCAAGTACGAGTTCAGCCCAAAGTGCTGTCTCAAAGTTGATTGGTATCAACGAGCGTTTAGAAGCCCCAAAGGTAACCTTTTCAGGAAGTACAGTTTCAGGAATGACCAAAGGCAAACAAGTAAATGCTCAAGTTTTAACAAACTTAACGGATTTAACCAATTGTGTCTGGAAGCAAGCTGAGAAATTCCCTCAAATTGCAGAAAAAATTGCTTATCGTGACCAACAATCTGCGGAACAATTCCGAGGAGGTGGGCGTTAAGTATGAGTGAAAAAGAGAGAAACGATGAA # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //