Array 1 21617-23779 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVN010000021.1 Erwinia amylovora strain Ea367 Ea_367_contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21617 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 21678 29 100.0 31 ............................. GTAAATAGCAAAATGATAAATAATTTATCAA 21739 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 21800 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 21861 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 21922 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 21983 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 22044 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 22105 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 22166 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 22227 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 22288 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 22349 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 22410 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 22471 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 22532 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 22593 29 100.0 31 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAA 22654 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 22715 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 22776 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 22837 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 22898 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 22959 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 23020 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 23081 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 23142 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 23203 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 23264 29 96.6 31 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAA 23325 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 23386 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 23447 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 23508 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 23569 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 23630 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 23691 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 23752 28 93.1 0 ...........A.....-........... | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.2 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 34687-36792 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVN010000021.1 Erwinia amylovora strain Ea367 Ea_367_contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 34687 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 34748 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 34809 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 34870 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 34931 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 34992 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 35053 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 35115 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 35176 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 35237 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 35298 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 35359 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 35420 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 35481 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 35542 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 35603 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 35664 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 35725 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 35786 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 35848 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 35909 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 35970 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 36031 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 36092 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 36153 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 36215 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 36276 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 36337 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 36398 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 36459 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 36520 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 36581 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 36642 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 36703 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 36764 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 46256-46584 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVN010000021.1 Erwinia amylovora strain Ea367 Ea_367_contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 46256 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 46316 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 46376 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 46436 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 46496 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 46557 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //